Wall clock time and date at job start Tue Mar 31 2020 11:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46894 * 111.00182 * 2 1 4 4 C 1.46897 * 110.99652 * 123.95296 * 2 1 3 5 5 C 1.50709 * 109.47460 * 66.04799 * 4 2 1 6 6 C 1.37982 * 120.07189 * 260.28238 * 5 4 2 7 7 C 1.38336 * 120.13979 * 180.25300 * 6 5 4 8 8 C 1.38373 * 120.29457 * 359.73922 * 7 6 5 9 9 C 1.37937 * 120.14833 * 359.97438 * 8 7 6 10 10 C 1.39555 * 120.07280 * 79.99783 * 5 4 2 11 11 C 1.47842 * 120.14302 * 0.02562 * 10 5 4 12 12 O 1.21549 * 120.00459 * 22.24632 * 11 10 5 13 13 N 1.34782 * 119.99583 * 202.24854 * 11 10 5 14 14 C 1.46497 * 120.00445 * 5.25824 * 13 11 10 15 15 C 1.46505 * 119.99693 * 185.25785 * 13 11 10 16 16 C 1.53942 * 113.83713 * 141.34988 * 15 13 11 17 17 N 1.47586 * 86.11619 * 90.75347 * 16 15 13 18 18 C 1.36939 * 134.49134 * 204.64331 * 17 16 15 19 19 H 1.07994 * 119.99504 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99949 * 359.97438 * 18 17 16 21 21 N 1.31616 * 120.00154 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99696 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47292 * 90.00049 * 22 20 18 24 24 H 1.48498 * 109.46963 * 209.99455 * 22 20 18 25 25 H 1.48501 * 109.47359 * 329.99640 * 22 20 18 26 26 C 1.47579 * 91.01415 * 24.63821 * 17 16 15 27 27 H 1.08998 * 109.47450 * 296.05024 * 1 2 3 28 28 H 1.09007 * 109.46828 * 56.04936 * 1 2 3 29 29 H 1.08998 * 109.47221 * 176.04186 * 1 2 3 30 30 H 1.09001 * 109.47377 * 183.95196 * 3 2 1 31 31 H 1.09006 * 109.47005 * 303.95223 * 3 2 1 32 32 H 1.09004 * 109.47168 * 63.95147 * 3 2 1 33 33 H 1.08998 * 109.47205 * 306.04759 * 4 2 1 34 34 H 1.09007 * 109.47423 * 186.04588 * 4 2 1 35 35 H 1.07997 * 119.92842 * 359.97438 * 6 5 4 36 36 H 1.08004 * 119.84789 * 179.76254 * 7 6 5 37 37 H 1.08001 * 119.92602 * 180.02562 * 8 7 6 38 38 H 1.07996 * 120.07594 * 180.02562 * 9 8 7 39 39 H 1.09005 * 109.47018 * 264.00150 * 14 13 11 40 40 H 1.08999 * 109.46827 * 23.99367 * 14 13 11 41 41 H 1.08998 * 109.47059 * 143.99674 * 14 13 11 42 42 H 1.09007 * 112.94637 * 9.66738 * 15 13 11 43 43 H 1.09005 * 113.77189 * 205.05304 * 16 15 13 44 44 H 1.09002 * 113.77305 * 336.45237 * 16 15 13 45 45 H 0.97003 * 120.00241 * 180.02562 * 21 20 18 46 46 H 1.08991 * 113.77158 * 221.06106 * 26 17 16 47 47 H 1.09000 * 113.76992 * 89.65911 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 6 1.6368 -2.2205 0.9729 6 6 0.5617 -2.7494 1.6573 7 6 0.2346 -4.0856 1.5112 8 6 0.9787 -4.8990 0.6748 9 6 2.0523 -4.3814 -0.0196 10 6 2.3879 -3.0340 0.1234 11 6 3.5376 -2.4726 -0.6174 12 8 4.0851 -1.4641 -0.2165 13 7 3.9787 -3.0791 -1.7373 14 6 3.2501 -4.2260 -2.2848 15 6 5.1868 -2.5912 -2.4072 16 6 6.0818 -3.7107 -2.9690 17 7 5.3053 -3.5682 -4.2160 18 6 5.0209 -4.3957 -5.2693 19 1 4.4095 -4.0402 -6.0854 20 6 5.5184 -5.6915 -5.2879 21 7 6.2640 -6.1245 -4.2934 22 14 5.1309 -6.8201 -6.7250 23 1 6.1762 -6.6689 -7.7690 24 1 5.1014 -8.2283 -6.2546 25 1 3.8072 -6.4605 -7.2941 26 6 4.9585 -2.1756 -3.8718 27 1 -0.3634 0.4513 0.9232 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0708 31 1 1.5898 1.9163 -0.8525 32 1 1.7044 1.8723 0.9233 33 1 1.5610 -0.3872 2.0628 34 1 3.0797 -0.6611 1.1757 35 1 -0.0228 -2.1199 2.3118 36 1 -0.6056 -4.4955 2.0521 37 1 0.7177 -5.9412 0.5649 38 1 2.6319 -5.0172 -0.6723 39 1 3.7101 -5.1498 -1.9339 40 1 2.2122 -4.1886 -1.9539 41 1 3.2858 -4.1930 -3.3737 42 1 5.7284 -1.8496 -1.8198 43 1 7.1295 -3.4271 -3.0690 44 1 5.9455 -4.6723 -2.4741 45 1 6.6120 -7.0299 -4.3066 46 1 3.9255 -1.9115 -4.0975 47 1 5.6763 -1.4410 -4.2369 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044337022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:37 Heat of formation + Delta-G solvation = 78.565925 kcal Electronic energy + Delta-G solvation = -27809.779612 eV Core-core repulsion = 24188.559518 eV Total energy + Delta-G solvation = -3621.220095 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.76587 -40.16756 -38.69060 -37.97034 -35.73103 -34.10520 -32.62382 -31.99307 -29.65360 -28.41700 -28.15408 -27.52475 -26.56224 -25.50724 -23.99301 -23.37856 -22.43367 -21.12537 -19.93934 -18.77158 -18.14107 -17.42264 -16.96849 -16.76394 -16.67267 -16.38145 -16.07126 -15.79867 -15.53687 -15.42539 -15.00131 -14.88789 -14.52557 -14.14899 -13.92951 -13.65662 -13.52336 -13.22031 -13.18769 -13.04034 -12.93885 -12.86198 -12.77300 -12.60496 -12.44469 -12.39655 -12.14891 -11.98179 -11.63172 -11.58867 -11.44886 -10.88635 -10.45139 -9.80856 -9.72121 -9.45746 -9.16857 -8.84346 -7.85050 -5.18672 -0.01306 0.41362 1.49255 1.50494 1.58636 1.93951 2.09305 2.50076 2.81647 3.30051 3.31089 3.43365 3.62107 3.83631 3.88234 3.92247 4.17406 4.28344 4.34461 4.36686 4.45148 4.46535 4.50141 4.58158 4.61305 4.63860 4.71625 4.76818 4.79209 4.86498 4.90816 4.99783 5.01914 5.05288 5.08926 5.16468 5.25189 5.31229 5.43626 5.50303 5.55000 5.55606 5.79947 5.94270 6.00000 6.13905 6.22816 6.60453 6.95708 7.27366 7.64502 8.59209 9.30796 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.003974 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.743354 B = 7044.334256 C = 7920.741754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.556 5.556 3 C 0.035 3.965 4 C 0.082 3.918 5 C -0.035 4.035 6 C -0.127 4.127 7 C -0.087 4.087 8 C -0.131 4.131 9 C -0.115 4.115 10 C -0.135 4.135 11 C 0.560 3.440 12 O -0.561 6.561 13 N -0.578 5.578 14 C 0.084 3.916 15 C 0.111 3.889 16 C 0.155 3.845 17 N -0.624 5.624 18 C -0.228 4.228 19 H 0.080 0.920 20 C -0.054 4.054 21 N -0.947 5.947 22 Si 0.970 3.030 23 H -0.293 1.293 24 H -0.294 1.294 25 H -0.269 1.269 26 C 0.112 3.888 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.147 0.853 36 H 0.159 0.841 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.028 0.972 44 H 0.053 0.947 45 H 0.248 0.752 46 H 0.049 0.951 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.984 7.378 13.654 21.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.280 5.280 3 C -0.113 4.113 4 C -0.045 4.045 5 C -0.036 4.036 6 C -0.145 4.145 7 C -0.105 4.105 8 C -0.149 4.149 9 C -0.133 4.133 10 C -0.139 4.139 11 C 0.351 3.649 12 O -0.442 6.442 13 N -0.308 5.308 14 C -0.058 4.058 15 C 0.006 3.994 16 C 0.029 3.971 17 N -0.351 5.351 18 C -0.356 4.356 19 H 0.098 0.902 20 C -0.248 4.248 21 N -0.596 5.596 22 Si 0.799 3.201 23 H -0.221 1.221 24 H -0.221 1.221 25 H -0.193 1.193 26 C -0.014 4.014 27 H 0.055 0.945 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.165 0.835 36 H 0.177 0.823 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.539 7.411 13.220 21.002 hybrid contribution 0.389 -0.415 -0.520 0.771 sum -14.150 6.996 12.700 20.259 Atomic orbital electron populations 1.22425 0.86690 1.02201 1.00916 1.61793 1.08514 1.14427 1.43254 1.22266 1.00336 0.87901 1.00770 1.21331 1.02522 0.89191 0.91457 1.19926 0.94278 0.95163 0.94237 1.21278 0.96369 0.96485 1.00369 1.21691 0.99250 0.93045 0.96553 1.21458 0.95225 1.01472 0.96704 1.22354 0.98109 0.94315 0.98533 1.19687 0.97719 0.95270 1.01209 1.18672 0.83587 0.82802 0.79844 1.90559 1.59934 1.25302 1.68382 1.47314 1.26192 1.32065 1.25245 1.22302 0.95611 0.86767 1.01111 1.22563 0.86662 0.97075 0.93114 1.22500 0.92796 0.96259 0.85555 1.46308 1.58141 1.08724 1.21957 1.19278 1.25813 0.92450 0.98085 0.90213 1.25430 1.00271 0.98583 1.00484 1.69988 1.39523 1.17064 1.33006 0.85207 0.77936 0.78064 0.78873 1.22076 1.22051 1.19337 1.23068 0.98773 0.87648 0.91940 0.94487 0.91256 0.91789 0.92685 0.90913 0.94682 0.93275 0.88768 0.83525 0.82331 0.83158 0.83857 0.93345 0.88910 0.90986 0.88293 0.95462 0.92858 0.94329 0.93270 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.27 127.69 1.18 1.70 16 2 N -0.56 -14.41 4.99 -953.46 -4.76 -19.17 16 3 C 0.04 0.81 9.57 127.69 1.22 2.03 16 4 C 0.08 2.14 4.21 85.56 0.36 2.50 16 5 C -0.03 -0.89 4.62 -19.60 -0.09 -0.98 16 6 C -0.13 -2.39 8.70 22.23 0.19 -2.19 16 7 C -0.09 -1.43 10.04 22.33 0.22 -1.20 16 8 C -0.13 -2.56 10.03 22.23 0.22 -2.33 16 9 C -0.12 -3.03 7.55 22.53 0.17 -2.86 16 10 C -0.14 -4.12 5.55 -20.09 -0.11 -4.23 16 11 C 0.56 20.56 7.39 86.78 0.64 21.21 16 12 O -0.56 -22.39 13.09 -3.87 -0.05 -22.44 16 13 N -0.58 -22.20 3.09 -831.73 -2.57 -24.78 16 14 C 0.08 3.11 7.60 127.77 0.97 4.08 16 15 C 0.11 4.56 4.50 46.75 0.21 4.77 16 16 C 0.16 7.41 6.77 86.48 0.59 8.00 16 17 N -0.62 -31.04 2.33 -717.35 -1.67 -32.71 16 18 C -0.23 -12.27 9.89 84.03 0.83 -11.44 16 19 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 20 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 21 N -0.95 -54.79 11.38 21.65 0.25 -54.54 16 22 Si 0.97 44.32 29.55 68.60 2.03 46.35 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 C 0.11 4.69 8.31 86.48 0.72 5.41 16 27 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 1.30 8.12 -2.38 -0.02 1.28 16 29 H 0.06 1.32 6.64 -2.39 -0.02 1.30 16 30 H 0.05 1.46 8.12 -2.39 -0.02 1.44 16 31 H 0.07 1.50 8.12 -2.38 -0.02 1.48 16 32 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.05 1.06 7.99 -2.39 -0.02 1.04 16 34 H 0.09 3.03 5.42 -2.38 -0.01 3.01 16 35 H 0.15 1.98 8.04 -2.91 -0.02 1.96 16 36 H 0.16 1.47 8.06 -2.91 -0.02 1.44 16 37 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 38 H 0.14 4.00 4.24 -2.91 -0.01 3.99 16 39 H 0.05 1.87 7.06 -2.38 -0.02 1.85 16 40 H 0.09 2.91 4.99 -2.39 -0.01 2.90 16 41 H 0.07 3.12 5.68 -2.39 -0.01 3.11 16 42 H 0.10 3.95 7.26 -2.38 -0.02 3.93 16 43 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.05 2.80 6.79 -2.39 -0.02 2.79 16 45 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 46 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -65.89 366.68 1.99 -63.90 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.97 Total: 21.43 kcal Atomic # 6 Polarization: 14.17 SS G_CDS: 7.80 Total: 21.97 kcal Atomic # 7 Polarization: -122.45 SS G_CDS: -8.76 Total: -131.20 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.05 Total: -22.44 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -65.89 1.99 -63.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044337022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.468 kcal (2) G-P(sol) polarization free energy of solvation -65.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds