Wall clock time and date at job start Tue Mar 31 2020 11:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35532 * 125.67751 * 2 1 4 4 C 1.35455 * 108.87042 * 180.30090 * 3 2 1 5 5 C 1.39835 * 107.86684 * 359.73754 * 4 3 2 6 6 C 1.37645 * 125.67861 * 179.84725 * 2 1 3 7 7 C 1.46679 * 126.23330 * 359.96636 * 6 2 1 8 8 O 1.21688 * 120.00181 * 4.41522 * 7 6 2 9 9 N 1.34779 * 119.99864 * 184.42106 * 7 6 2 10 10 C 1.46503 * 119.99539 * 174.50248 * 9 7 6 11 11 C 1.53004 * 109.46615 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.43741 * 300.04578 * 11 10 9 13 13 C 1.53146 * 109.43571 * 59.96380 * 11 10 9 14 14 C 1.53695 * 108.88080 * 66.17554 * 13 11 10 15 15 H 1.09001 * 112.10163 * 187.61244 * 14 13 11 16 16 C 1.54615 * 107.83182 * 312.22648 * 14 13 11 17 17 C 1.54822 * 104.65036 * 88.54800 * 16 14 13 18 18 C 1.54612 * 104.65633 * 0.02562 * 17 16 14 19 19 H 1.08996 * 112.69331 * 147.18457 * 18 17 16 20 20 C 1.53153 * 107.80678 * 271.13219 * 18 17 16 21 21 N 1.48290 * 107.27594 * 64.00403 * 14 13 11 22 22 C 1.36934 * 128.20911 * 107.40223 * 21 14 13 23 23 H 1.07998 * 120.00461 * 165.21224 * 22 21 14 24 24 C 1.38813 * 120.00027 * 345.20272 * 22 21 14 25 25 N 1.31622 * 120.00009 * 351.49673 * 24 22 21 26 26 Si 1.86802 * 120.00126 * 171.49402 * 24 22 21 27 27 H 1.48494 * 109.47079 * 270.00293 * 26 24 22 28 28 H 1.48501 * 109.47057 * 30.00242 * 26 24 22 29 29 H 1.48503 * 109.47213 * 150.00335 * 26 24 22 30 30 H 1.09002 * 109.47422 * 271.10168 * 1 2 3 31 31 H 1.09008 * 109.47608 * 31.10214 * 1 2 3 32 32 H 1.09002 * 109.47152 * 151.10057 * 1 2 3 33 33 H 1.08003 * 125.56292 * 0.02562 * 3 2 1 34 34 H 1.07997 * 126.06564 * 179.69366 * 4 3 2 35 35 H 1.07991 * 126.45919 * 179.97438 * 5 4 3 36 36 H 0.96996 * 120.00072 * 354.50797 * 9 7 6 37 37 H 1.09001 * 109.47028 * 60.00292 * 10 9 7 38 38 H 1.09001 * 109.47454 * 299.99679 * 10 9 7 39 39 H 1.09002 * 109.56609 * 306.35491 * 13 11 10 40 40 H 1.08999 * 109.56374 * 185.99185 * 13 11 10 41 41 H 1.08997 * 110.38341 * 207.48221 * 16 14 13 42 42 H 1.09006 * 110.38182 * 329.84775 * 16 14 13 43 43 H 1.08996 * 110.33710 * 241.26396 * 17 16 14 44 44 H 1.09000 * 110.52352 * 118.83890 * 17 16 14 45 45 H 1.08999 * 109.62753 * 288.14182 * 20 18 17 46 46 H 1.08992 * 109.58056 * 167.85739 * 20 18 17 47 47 H 0.96996 * 120.00019 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5521 0.7093 -0.0067 5 6 3.5780 -0.6888 -0.0050 6 6 2.2678 -1.1181 0.0030 7 6 1.8124 -2.5124 0.0074 8 8 0.6246 -2.7648 -0.0724 9 7 2.7094 -3.5140 0.1000 10 6 2.2500 -4.8994 0.2258 11 6 3.4599 -5.8319 0.3131 12 1 4.0632 -5.7286 -0.5888 13 6 4.3032 -5.4594 1.5360 14 6 3.4925 -5.7548 2.8079 15 1 3.9891 -5.3865 3.7055 16 6 2.0799 -5.1550 2.6189 17 6 1.2641 -6.2813 1.9386 18 6 2.2642 -7.4503 1.7843 19 1 1.7866 -8.4263 1.8701 20 6 2.9790 -7.2809 0.4405 21 7 3.2642 -7.2193 2.8544 22 6 3.8438 -8.1408 3.6850 23 1 3.4184 -9.1294 3.7754 24 6 4.9782 -7.8045 4.4108 25 7 5.5942 -6.6647 4.1786 26 14 5.6307 -8.9695 5.7172 27 1 5.0025 -8.6495 7.0241 28 1 5.3045 -10.3684 5.3404 29 1 7.1039 -8.8167 5.8255 30 1 -0.3634 0.0198 1.0275 31 1 -0.3634 0.8800 -0.5309 32 1 -0.3633 -0.8997 -0.4967 33 1 1.9081 2.1236 0.0004 34 1 4.4131 1.3611 -0.0131 35 1 4.4582 -1.3144 -0.0095 36 1 3.6591 -3.3176 0.0834 37 1 1.6493 -5.1635 -0.6447 38 1 1.6470 -5.0018 1.1280 39 1 4.5510 -4.3986 1.4991 40 1 5.2191 -6.0502 1.5414 41 1 1.6446 -4.8975 3.5845 42 1 2.1235 -4.2768 1.9747 43 1 0.9084 -5.9542 0.9616 44 1 0.4259 -6.5798 2.5682 45 1 2.2895 -7.5091 -0.3723 46 1 3.8340 -7.9552 0.3940 47 1 6.3871 -6.4299 4.6855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048505530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:33 Heat of formation + Delta-G solvation = 135.391111 kcal Electronic energy + Delta-G solvation = -28107.136668 eV Core-core repulsion = 24488.380698 eV Total energy + Delta-G solvation = -3618.755970 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.52345 -40.96746 -38.43628 -34.77630 -33.18293 -32.58639 -31.39905 -30.50915 -30.01636 -29.15610 -26.55531 -26.46055 -23.80805 -23.23896 -22.29492 -20.76881 -20.40963 -19.70991 -19.36895 -18.64445 -17.84973 -16.99864 -16.08316 -15.72532 -15.60997 -14.95413 -14.70271 -14.26392 -14.03056 -13.57095 -13.37749 -13.29855 -12.96229 -12.81411 -12.61143 -12.44309 -12.33709 -12.04467 -11.97668 -11.68590 -11.42317 -11.38683 -11.23174 -10.82462 -10.70860 -10.56593 -10.15251 -9.90629 -9.69490 -9.52679 -9.40570 -9.34229 -9.19774 -8.79557 -8.61505 -8.35384 -8.02327 -6.78950 -5.74941 -3.09742 1.51281 2.64623 2.71268 3.39258 3.45308 3.46242 3.50888 3.59644 4.48027 4.72549 4.87547 4.92121 5.13668 5.24947 5.31088 5.35128 5.37063 5.48363 5.50983 5.54872 5.61762 5.76613 5.83789 5.94130 6.01103 6.08574 6.11260 6.12353 6.19121 6.28718 6.43609 6.49506 6.58619 6.66108 6.68406 6.74118 6.83483 6.86456 6.93694 6.95254 7.08578 7.13366 7.14705 7.57500 7.60438 7.76035 7.78674 8.26523 8.39767 9.15753 9.77671 10.57055 11.37033 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.003575 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.560970 B = 7829.940539 C = 8436.058275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.412 5.412 3 C 0.006 3.994 4 C -0.208 4.208 5 C -0.143 4.143 6 C -0.047 4.047 7 C 0.582 3.418 8 O -0.559 6.559 9 N -0.705 5.705 10 C 0.006 3.994 11 C -0.088 4.088 12 H 0.051 0.949 13 C -0.111 4.111 14 C 0.183 3.817 15 H 0.111 0.889 16 C -0.175 4.175 17 C -0.161 4.161 18 C 0.148 3.852 19 H 0.066 0.934 20 C -0.121 4.121 21 N -0.584 5.584 22 C -0.221 4.221 23 H 0.074 0.926 24 C -0.005 4.005 25 N -0.912 5.912 26 Si 0.909 3.091 27 H -0.290 1.290 28 H -0.282 1.282 29 H -0.292 1.292 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.106 0.894 33 H 0.166 0.834 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.398 0.602 37 H 0.048 0.952 38 H 0.195 0.805 39 H 0.038 0.962 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.055 0.945 45 H 0.045 0.955 46 H 0.065 0.935 47 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 12.972 -9.540 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.085 5.085 3 C -0.129 4.129 4 C -0.232 4.232 5 C -0.170 4.170 6 C -0.161 4.161 7 C 0.370 3.630 8 O -0.440 6.440 9 N -0.355 5.355 10 C -0.112 4.112 11 C -0.107 4.107 12 H 0.070 0.930 13 C -0.151 4.151 14 C 0.076 3.924 15 H 0.129 0.871 16 C -0.213 4.213 17 C -0.199 4.199 18 C 0.040 3.960 19 H 0.085 0.915 20 C -0.161 4.161 21 N -0.305 5.305 22 C -0.350 4.350 23 H 0.092 0.908 24 C -0.202 4.202 25 N -0.559 5.559 26 Si 0.740 3.260 27 H -0.217 1.217 28 H -0.208 1.208 29 H -0.218 1.218 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.183 0.817 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.233 0.767 37 H 0.066 0.934 38 H 0.210 0.790 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -7.565 12.646 -9.399 17.478 hybrid contribution 1.098 -0.341 0.413 1.222 sum -6.467 12.306 -8.985 16.553 Atomic orbital electron populations 1.22297 0.76272 1.05285 1.03869 1.43839 1.06756 1.05009 1.52867 1.21980 0.90784 0.91438 1.08658 1.20810 0.95947 0.95063 1.11361 1.21390 0.94596 0.95512 1.05460 1.20213 0.90434 0.87862 1.17564 1.16959 0.85777 0.83435 0.76838 1.90731 1.16326 1.84949 1.51974 1.46000 1.09557 1.07146 1.72808 1.25247 0.99956 0.78239 1.07774 1.21295 0.95500 0.95005 0.98906 0.93046 1.22073 0.99635 0.98470 0.94891 1.21485 0.89812 0.83938 0.97177 0.87111 1.23654 0.99934 0.98168 0.99537 1.23463 0.98743 0.97384 1.00312 1.21433 0.90366 0.95670 0.88498 0.91537 1.22044 1.00481 0.95232 0.98319 1.45182 1.46791 1.02849 1.35700 1.19001 1.05482 0.93941 1.16546 0.90780 1.24812 0.96558 0.97862 1.00982 1.69845 1.20571 1.22949 1.42544 0.86168 0.77885 0.80106 0.81872 1.21701 1.20751 1.21806 0.90694 0.90223 0.87540 0.81656 0.84118 0.83850 0.76655 0.93387 0.79034 0.94387 0.90655 0.93137 0.89061 0.89260 0.92624 0.93596 0.91581 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 10.66 59.84 0.64 1.26 16 2 N -0.41 -4.99 3.16 -120.23 -0.38 -5.37 16 3 C 0.01 0.07 11.38 -16.91 -0.19 -0.13 16 4 C -0.21 -2.25 10.81 -39.98 -0.43 -2.68 16 5 C -0.14 -1.77 10.36 -39.12 -0.41 -2.18 16 6 C -0.05 -0.66 6.89 -81.98 -0.56 -1.22 16 7 C 0.58 9.17 7.53 -12.85 -0.10 9.08 16 8 O -0.56 -9.98 14.64 5.20 0.08 -9.91 16 9 N -0.70 -10.48 4.36 -61.61 -0.27 -10.75 16 10 C 0.01 0.10 2.69 -4.04 -0.01 0.09 16 11 C -0.09 -1.51 2.77 -90.44 -0.25 -1.76 16 12 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 13 C -0.11 -2.22 5.21 -26.29 -0.14 -2.36 16 14 C 0.18 4.09 3.16 -65.73 -0.21 3.88 16 15 H 0.11 2.89 6.26 -51.93 -0.32 2.56 16 16 C -0.17 -3.36 5.75 -24.92 -0.14 -3.51 16 17 C -0.16 -2.88 5.74 -24.92 -0.14 -3.03 16 18 C 0.15 2.95 4.29 -66.03 -0.28 2.67 16 19 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 20 C -0.12 -2.17 5.35 -26.55 -0.14 -2.31 16 21 N -0.58 -14.06 2.82 -153.09 -0.43 -14.49 16 22 C -0.22 -5.92 10.38 -15.06 -0.16 -6.08 16 23 H 0.07 1.94 7.84 -52.49 -0.41 1.53 16 24 C -0.01 -0.14 5.43 -17.43 -0.09 -0.24 16 25 N -0.91 -25.31 10.62 55.49 0.59 -24.72 16 26 Si 0.91 21.56 29.56 -169.99 -5.03 16.54 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 32 H 0.11 1.24 6.18 -51.93 -0.32 0.92 16 33 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 35 H 0.14 1.54 7.45 -52.49 -0.39 1.15 16 36 H 0.40 5.34 6.21 -40.82 -0.25 5.09 16 37 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 38 H 0.19 3.30 1.12 -165.84 -0.19 3.11 16 39 H 0.04 0.68 6.71 -51.93 -0.35 0.34 16 40 H 0.07 1.76 8.07 -51.93 -0.42 1.34 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.09 1.65 3.94 -51.93 -0.20 1.45 16 43 H 0.09 1.47 4.83 -51.93 -0.25 1.22 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 47 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -30.53 351.04 -9.66 -40.19 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -6.89 Total: 11.72 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.62 Total: -8.50 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.49 Total: -55.32 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.91 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.53 -9.66 -40.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048505530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.581 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds