Wall clock time and date at job start Tue Mar 31 2020 11:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35532 * 125.67751 * 2 1 4 4 C 1.35455 * 108.87042 * 180.30090 * 3 2 1 5 5 C 1.39835 * 107.86684 * 359.73754 * 4 3 2 6 6 C 1.37645 * 125.67861 * 179.84725 * 2 1 3 7 7 C 1.46679 * 126.23330 * 359.96636 * 6 2 1 8 8 O 1.21688 * 120.00181 * 4.41522 * 7 6 2 9 9 N 1.34779 * 119.99864 * 184.42106 * 7 6 2 10 10 C 1.46503 * 119.99539 * 174.50248 * 9 7 6 11 11 C 1.53004 * 109.46615 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.43741 * 300.04578 * 11 10 9 13 13 C 1.53146 * 109.43571 * 59.96380 * 11 10 9 14 14 C 1.53695 * 108.88080 * 66.17554 * 13 11 10 15 15 H 1.09001 * 112.10163 * 187.61244 * 14 13 11 16 16 C 1.54615 * 107.83182 * 312.22648 * 14 13 11 17 17 C 1.54822 * 104.65036 * 88.54800 * 16 14 13 18 18 C 1.54612 * 104.65633 * 0.02562 * 17 16 14 19 19 H 1.08996 * 112.69331 * 147.18457 * 18 17 16 20 20 C 1.53153 * 107.80678 * 271.13219 * 18 17 16 21 21 N 1.48290 * 107.27594 * 64.00403 * 14 13 11 22 22 C 1.36934 * 128.20911 * 107.40223 * 21 14 13 23 23 H 1.07998 * 120.00461 * 165.21224 * 22 21 14 24 24 C 1.38813 * 120.00027 * 345.20272 * 22 21 14 25 25 N 1.31622 * 120.00009 * 351.49673 * 24 22 21 26 26 Si 1.86802 * 120.00126 * 171.49402 * 24 22 21 27 27 H 1.48494 * 109.47079 * 270.00293 * 26 24 22 28 28 H 1.48501 * 109.47057 * 30.00242 * 26 24 22 29 29 H 1.48503 * 109.47213 * 150.00335 * 26 24 22 30 30 H 1.09002 * 109.47422 * 271.10168 * 1 2 3 31 31 H 1.09008 * 109.47608 * 31.10214 * 1 2 3 32 32 H 1.09002 * 109.47152 * 151.10057 * 1 2 3 33 33 H 1.08003 * 125.56292 * 0.02562 * 3 2 1 34 34 H 1.07997 * 126.06564 * 179.69366 * 4 3 2 35 35 H 1.07991 * 126.45919 * 179.97438 * 5 4 3 36 36 H 0.96996 * 120.00072 * 354.50797 * 9 7 6 37 37 H 1.09001 * 109.47028 * 60.00292 * 10 9 7 38 38 H 1.09001 * 109.47454 * 299.99679 * 10 9 7 39 39 H 1.09002 * 109.56609 * 306.35491 * 13 11 10 40 40 H 1.08999 * 109.56374 * 185.99185 * 13 11 10 41 41 H 1.08997 * 110.38341 * 207.48221 * 16 14 13 42 42 H 1.09006 * 110.38182 * 329.84775 * 16 14 13 43 43 H 1.08996 * 110.33710 * 241.26396 * 17 16 14 44 44 H 1.09000 * 110.52352 * 118.83890 * 17 16 14 45 45 H 1.08999 * 109.62753 * 288.14182 * 20 18 17 46 46 H 1.08992 * 109.58056 * 167.85739 * 20 18 17 47 47 H 0.96996 * 120.00019 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5521 0.7093 -0.0067 5 6 3.5780 -0.6888 -0.0050 6 6 2.2678 -1.1181 0.0030 7 6 1.8124 -2.5124 0.0074 8 8 0.6246 -2.7648 -0.0724 9 7 2.7094 -3.5140 0.1000 10 6 2.2500 -4.8994 0.2258 11 6 3.4599 -5.8319 0.3131 12 1 4.0632 -5.7286 -0.5888 13 6 4.3032 -5.4594 1.5360 14 6 3.4925 -5.7548 2.8079 15 1 3.9891 -5.3865 3.7055 16 6 2.0799 -5.1550 2.6189 17 6 1.2641 -6.2813 1.9386 18 6 2.2642 -7.4503 1.7843 19 1 1.7866 -8.4263 1.8701 20 6 2.9790 -7.2809 0.4405 21 7 3.2642 -7.2193 2.8544 22 6 3.8438 -8.1408 3.6850 23 1 3.4184 -9.1294 3.7754 24 6 4.9782 -7.8045 4.4108 25 7 5.5942 -6.6647 4.1786 26 14 5.6307 -8.9695 5.7172 27 1 5.0025 -8.6495 7.0241 28 1 5.3045 -10.3684 5.3404 29 1 7.1039 -8.8167 5.8255 30 1 -0.3634 0.0198 1.0275 31 1 -0.3634 0.8800 -0.5309 32 1 -0.3633 -0.8997 -0.4967 33 1 1.9081 2.1236 0.0004 34 1 4.4131 1.3611 -0.0131 35 1 4.4582 -1.3144 -0.0095 36 1 3.6591 -3.3176 0.0834 37 1 1.6493 -5.1635 -0.6447 38 1 1.6470 -5.0018 1.1280 39 1 4.5510 -4.3986 1.4991 40 1 5.2191 -6.0502 1.5414 41 1 1.6446 -4.8975 3.5845 42 1 2.1235 -4.2768 1.9747 43 1 0.9084 -5.9542 0.9616 44 1 0.4259 -6.5798 2.5682 45 1 2.2895 -7.5091 -0.3723 46 1 3.8340 -7.9552 0.3940 47 1 6.3871 -6.4299 4.6855 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048505530.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:32 Heat of formation + Delta-G solvation = 118.173967 kcal Electronic energy + Delta-G solvation = -28107.883259 eV Core-core repulsion = 24488.380698 eV Total energy + Delta-G solvation = -3619.502561 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.79696 -42.08123 -39.66866 -36.22450 -34.72439 -33.66548 -32.88470 -32.08518 -31.70217 -30.30103 -28.03360 -27.32941 -25.48385 -24.81252 -23.50591 -22.14657 -21.46059 -21.02604 -20.83077 -20.10988 -18.92630 -18.63374 -17.54774 -16.83036 -16.67304 -16.53938 -16.17009 -15.71574 -15.26248 -14.77649 -14.60006 -14.53035 -14.29272 -14.16052 -14.08280 -13.69712 -13.30758 -13.21849 -13.12594 -13.11491 -13.01339 -12.91812 -12.82483 -12.62713 -12.41698 -12.33419 -11.96549 -11.43698 -11.19755 -11.05488 -10.96745 -10.94815 -10.75800 -10.44555 -9.64564 -9.56542 -9.07755 -8.70550 -7.79299 -5.13968 0.53329 1.47985 1.49156 1.56765 1.76281 1.87886 2.43553 2.51882 2.53544 3.36742 3.62212 3.83209 3.96714 3.99941 4.02896 4.04568 4.23023 4.27216 4.29200 4.41692 4.42773 4.52052 4.56267 4.59439 4.63290 4.73779 4.77898 4.79884 4.92511 4.98072 5.06336 5.16792 5.18661 5.20259 5.30164 5.32164 5.39619 5.50287 5.54595 5.56119 5.62054 5.83858 5.86356 5.93580 6.04773 6.32728 6.37631 6.60377 7.14321 7.23534 7.80645 8.61630 9.30950 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.003575 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.560970 B = 7829.940539 C = 8436.058275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.420 5.420 3 C 0.022 3.978 4 C -0.223 4.223 5 C -0.145 4.145 6 C -0.088 4.088 7 C 0.581 3.419 8 O -0.586 6.586 9 N -0.703 5.703 10 C 0.017 3.983 11 C -0.078 4.078 12 H 0.069 0.931 13 C -0.099 4.099 14 C 0.177 3.823 15 H 0.067 0.933 16 C -0.165 4.165 17 C -0.149 4.149 18 C 0.140 3.860 19 H 0.069 0.931 20 C -0.116 4.116 21 N -0.607 5.607 22 C -0.232 4.232 23 H 0.073 0.927 24 C -0.057 4.057 25 N -0.934 5.934 26 Si 0.968 3.032 27 H -0.292 1.292 28 H -0.273 1.273 29 H -0.297 1.297 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.205 0.795 34 H 0.163 0.837 35 H 0.152 0.848 36 H 0.405 0.595 37 H 0.057 0.943 38 H 0.183 0.817 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.039 0.961 42 H 0.107 0.893 43 H 0.114 0.886 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.043 0.957 47 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.560 14.552 -10.966 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.093 5.093 3 C -0.114 4.114 4 C -0.246 4.246 5 C -0.172 4.172 6 C -0.200 4.200 7 C 0.370 3.630 8 O -0.469 6.469 9 N -0.353 5.353 10 C -0.102 4.102 11 C -0.097 4.097 12 H 0.088 0.912 13 C -0.139 4.139 14 C 0.071 3.929 15 H 0.085 0.915 16 C -0.203 4.203 17 C -0.187 4.187 18 C 0.033 3.967 19 H 0.087 0.913 20 C -0.155 4.155 21 N -0.329 5.329 22 C -0.361 4.361 23 H 0.091 0.909 24 C -0.251 4.251 25 N -0.582 5.582 26 Si 0.797 3.203 27 H -0.219 1.219 28 H -0.198 1.198 29 H -0.223 1.223 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.222 0.778 34 H 0.180 0.820 35 H 0.169 0.831 36 H 0.241 0.759 37 H 0.075 0.925 38 H 0.199 0.801 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.124 0.876 43 H 0.132 0.868 44 H 0.079 0.921 45 H 0.098 0.902 46 H 0.062 0.938 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.598 14.216 -10.845 19.840 hybrid contribution 1.403 -0.749 0.849 1.803 sum -7.196 13.466 -9.996 18.250 Atomic orbital electron populations 1.22390 0.75308 1.05855 1.04314 1.44101 1.07574 1.04968 1.52631 1.22685 0.90445 0.92502 1.05754 1.21183 0.97255 0.94610 1.11579 1.21685 0.94381 0.96714 1.04386 1.20112 0.91478 0.87599 1.20856 1.17233 0.85385 0.84292 0.76097 1.90711 1.17318 1.85482 1.53365 1.45889 1.09948 1.06618 1.72850 1.24925 0.99056 0.78709 1.07551 1.21179 0.95714 0.94832 0.97944 0.91241 1.21844 0.98036 0.98654 0.95350 1.21372 0.91531 0.83522 0.96496 0.91478 1.23596 0.98000 0.99082 0.99656 1.23407 0.97971 0.95746 1.01577 1.21679 0.90020 0.96664 0.88321 0.91314 1.21958 1.00137 0.95233 0.98216 1.45388 1.47470 1.03213 1.36841 1.19285 1.05454 0.94421 1.16940 0.90916 1.25491 0.97213 0.99388 1.03024 1.70037 1.20627 1.24259 1.43245 0.85240 0.76714 0.78871 0.79445 1.21908 1.19804 1.22329 0.90423 0.86721 0.89772 0.77810 0.81967 0.83062 0.75852 0.92462 0.80142 0.92891 0.94653 0.94178 0.87562 0.86836 0.92070 0.90163 0.93770 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 10.66 127.77 1.36 2.45 16 2 N -0.42 -9.26 3.16 -534.30 -1.69 -10.95 16 3 C 0.02 0.37 11.38 83.48 0.95 1.32 16 4 C -0.22 -4.22 10.81 22.01 0.24 -3.98 16 5 C -0.14 -3.35 10.36 22.57 0.23 -3.12 16 6 C -0.09 -2.34 6.89 40.35 0.28 -2.06 16 7 C 0.58 17.68 7.53 86.45 0.65 18.33 16 8 O -0.59 -20.40 14.64 -4.31 -0.06 -20.46 16 9 N -0.70 -19.88 4.36 -467.06 -2.04 -21.92 16 10 C 0.02 0.51 2.69 86.38 0.23 0.74 16 11 C -0.08 -2.56 2.77 -10.68 -0.03 -2.59 16 12 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 13 C -0.10 -4.02 5.21 30.88 0.16 -3.86 16 14 C 0.18 8.15 3.16 45.43 0.14 8.29 16 15 H 0.07 3.68 6.26 -2.39 -0.01 3.66 16 16 C -0.17 -6.33 5.75 31.77 0.18 -6.15 16 17 C -0.15 -5.13 5.74 31.76 0.18 -4.94 16 18 C 0.14 5.47 4.29 45.25 0.19 5.66 16 19 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 20 C -0.12 -3.99 5.35 30.71 0.16 -3.83 16 21 N -0.61 -29.79 2.82 -638.27 -1.80 -31.59 16 22 C -0.23 -12.69 10.38 84.03 0.87 -11.82 16 23 H 0.07 3.89 7.84 -2.91 -0.02 3.86 16 24 C -0.06 -3.16 5.43 84.86 0.46 -2.70 16 25 N -0.93 -53.90 10.62 21.65 0.23 -53.67 16 26 Si 0.97 45.43 29.56 68.60 2.03 47.46 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 28 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 29 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.08 1.90 6.18 -2.39 -0.01 1.88 16 33 H 0.21 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.15 3.06 7.45 -2.92 -0.02 3.03 16 36 H 0.41 10.32 6.21 -92.71 -0.58 9.74 16 37 H 0.06 1.68 8.00 -2.39 -0.02 1.66 16 38 H 0.18 5.89 1.12 -109.38 -0.12 5.77 16 39 H 0.05 1.92 6.71 -2.39 -0.02 1.91 16 40 H 0.03 1.70 8.07 -2.39 -0.02 1.68 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.11 3.76 3.94 -2.38 -0.01 3.75 16 43 H 0.11 3.42 4.83 -2.39 -0.01 3.41 16 44 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -68.44 351.04 3.24 -65.20 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: 0.30 Total: 34.17 kcal Atomic # 6 Polarization: -14.52 SS G_CDS: 6.28 Total: -8.24 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -5.30 Total: -118.13 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: -0.06 Total: -20.46 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -68.44 3.24 -65.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048505530.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.375 kcal (2) G-P(sol) polarization free energy of solvation -68.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds