Wall clock time and date at job start Tue Mar 31 2020 11:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35531 * 125.67929 * 2 1 4 4 C 1.35452 * 108.87089 * 179.97438 * 3 2 1 5 5 C 1.39826 * 107.86571 * 359.78067 * 4 3 2 6 6 C 1.37655 * 125.67953 * 180.02562 * 2 1 3 7 7 C 1.46680 * 126.23093 * 359.96194 * 6 2 1 8 8 O 1.21700 * 119.99896 * 333.13351 * 7 6 2 9 9 N 1.34776 * 120.00036 * 153.40008 * 7 6 2 10 10 C 1.46939 * 120.70157 * 350.15241 * 9 7 6 11 11 C 1.52718 * 109.17630 * 234.11811 * 10 9 7 12 12 C 1.53169 * 109.35267 * 305.01488 * 11 10 9 13 13 C 1.52236 * 109.65152 * 60.04055 * 12 11 10 14 14 C 1.54486 * 110.28879 * 178.01572 * 13 12 11 15 15 C 1.55031 * 101.52794 * 276.20372 * 14 13 12 16 16 N 1.47485 * 104.90483 * 323.65588 * 15 14 13 17 17 C 1.36940 * 125.66202 * 203.99415 * 16 15 14 18 18 H 1.08004 * 120.00018 * 170.73959 * 17 16 15 19 19 C 1.38815 * 119.99925 * 350.72794 * 17 16 15 20 20 N 1.31620 * 119.99733 * 154.61532 * 19 17 16 21 21 Si 1.86794 * 119.99997 * 334.61778 * 19 17 16 22 22 H 1.48505 * 109.46870 * 88.96695 * 21 19 17 23 23 H 1.48503 * 109.47127 * 208.95907 * 21 19 17 24 24 H 1.48490 * 109.47409 * 328.96337 * 21 19 17 25 25 C 1.47181 * 108.67747 * 24.00956 * 16 15 14 26 26 C 1.47082 * 120.70477 * 170.42429 * 9 7 6 27 27 H 1.09005 * 109.47423 * 269.72759 * 1 2 3 28 28 H 1.09001 * 109.47607 * 29.72586 * 1 2 3 29 29 H 1.09008 * 109.47430 * 149.72736 * 1 2 3 30 30 H 1.08000 * 125.56342 * 0.04134 * 3 2 1 31 31 H 1.08004 * 126.06100 * 180.02562 * 4 3 2 32 32 H 1.08000 * 126.45826 * 180.25095 * 5 4 3 33 33 H 1.08994 * 109.56257 * 353.99981 * 10 9 7 34 34 H 1.09000 * 109.56332 * 114.33744 * 10 9 7 35 35 H 1.08999 * 109.57917 * 184.98966 * 11 10 9 36 36 H 1.09003 * 109.35898 * 64.90996 * 11 10 9 37 37 H 1.09000 * 109.44260 * 299.98402 * 12 11 10 38 38 H 1.08998 * 109.41274 * 180.02562 * 12 11 10 39 39 H 1.08995 * 111.01554 * 34.26033 * 14 13 12 40 40 H 1.09001 * 111.01312 * 158.14205 * 14 13 12 41 41 H 1.09000 * 110.35629 * 204.80171 * 15 14 13 42 42 H 1.09000 * 110.44356 * 82.55862 * 15 14 13 43 43 H 0.97003 * 119.99621 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.91535 * 239.10327 * 25 16 15 45 45 H 1.09008 * 109.91397 * 117.83457 * 25 16 15 46 46 H 1.09005 * 109.57880 * 247.33788 * 26 9 7 47 47 H 1.09003 * 109.57876 * 7.73653 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5521 0.7092 0.0006 5 6 3.5779 -0.6888 0.0060 6 6 2.2678 -1.1182 -0.0005 7 6 1.8124 -2.5125 -0.0003 8 8 0.7300 -2.7990 0.4765 9 7 2.5949 -3.4771 -0.5234 10 6 3.8021 -3.1320 -1.2869 11 6 3.7433 -3.8124 -2.6528 12 6 3.5448 -5.3191 -2.4612 13 6 2.2434 -5.5729 -1.7132 14 6 2.0036 -7.0909 -1.5554 15 6 1.3458 -7.4436 -2.9142 16 7 0.5050 -6.2773 -3.2427 17 6 -0.5905 -6.2889 -4.0644 18 1 -1.2286 -5.4197 -4.1259 19 6 -0.8806 -7.4177 -4.8184 20 7 -2.1178 -7.6538 -5.2004 21 14 0.4849 -8.6015 -5.2909 22 1 0.6395 -9.6280 -4.2290 23 1 0.1426 -9.2651 -6.5746 24 1 1.7580 -7.8528 -5.4447 25 6 1.0388 -5.0987 -2.5411 26 6 2.2555 -4.8973 -0.3473 27 1 -0.3634 -0.0049 1.0277 28 1 -0.3634 0.8924 -0.5096 29 1 -0.3634 -0.8876 -0.5181 30 1 1.9082 2.1235 0.0006 31 1 4.4132 1.3612 0.0011 32 1 4.4582 -1.3144 0.0116 33 1 3.8526 -2.0515 -1.4210 34 1 4.6852 -3.4763 -0.7487 35 1 4.6746 -3.6336 -3.1903 36 1 2.9089 -3.4052 -3.2238 37 1 4.3781 -5.7248 -1.8875 38 1 3.5032 -5.8058 -3.4356 39 1 2.9455 -7.6242 -1.4271 40 1 1.3245 -7.2953 -0.7277 41 1 0.7313 -8.3386 -2.8171 42 1 2.1080 -7.5891 -3.6798 43 1 -2.3206 -8.4428 -5.7270 44 1 0.2768 -4.6819 -1.8826 45 1 1.3581 -4.3488 -3.2649 46 1 3.0002 -5.3746 0.2897 47 1 1.2705 -4.9832 0.1115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054088286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:55 Heat of formation + Delta-G solvation = 59.391194 kcal Electronic energy + Delta-G solvation = -28016.684025 eV Core-core repulsion = 24394.632452 eV Total energy + Delta-G solvation = -3622.051574 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.62515 -40.13320 -38.25745 -36.11999 -33.44225 -32.72720 -31.98441 -30.96125 -29.59712 -28.54514 -26.70663 -26.01976 -25.68882 -23.61107 -22.45505 -21.45962 -20.89569 -20.78535 -19.16469 -18.26072 -17.31120 -16.77967 -16.40780 -15.66579 -15.55357 -15.27983 -15.10630 -14.63933 -14.24125 -13.94120 -13.75501 -13.53842 -13.30949 -13.15138 -13.05869 -12.82961 -12.59720 -12.43220 -12.37455 -12.22790 -12.06638 -11.61037 -11.42091 -11.20522 -11.13131 -10.94583 -10.63828 -10.39339 -10.10422 -9.99873 -9.88841 -9.71851 -9.31341 -8.86116 -8.68387 -8.57625 -8.26966 -7.01839 -5.87838 -3.11808 1.44738 2.44401 2.60769 3.16852 3.28256 3.37141 3.49985 3.52289 4.44765 4.59751 4.66437 4.73850 4.83010 4.91297 4.97381 5.02430 5.09845 5.13819 5.21581 5.25184 5.26915 5.39983 5.46730 5.49730 5.54207 5.68259 5.77506 5.78577 5.85102 5.89845 5.91233 5.99091 6.08040 6.15001 6.22575 6.36326 6.46041 6.47921 6.60709 6.65943 6.76566 6.81168 6.84132 6.87568 7.04934 7.40709 7.72987 8.16879 8.35941 8.89607 9.76185 10.24562 11.27954 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020081 B = 0.003826 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.035424 B = 7317.092130 C = 7939.373500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.411 5.411 3 C 0.008 3.992 4 C -0.209 4.209 5 C -0.151 4.151 6 C -0.041 4.041 7 C 0.587 3.413 8 O -0.543 6.543 9 N -0.595 5.595 10 C 0.093 3.907 11 C -0.138 4.138 12 C -0.102 4.102 13 C -0.086 4.086 14 C -0.120 4.120 15 C 0.106 3.894 16 N -0.609 5.609 17 C -0.237 4.237 18 H 0.092 0.908 19 C 0.016 3.984 20 N -0.909 5.909 21 Si 0.881 3.119 22 H -0.288 1.288 23 H -0.305 1.305 24 H -0.275 1.275 25 C 0.154 3.846 26 C 0.133 3.867 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.167 0.833 31 H 0.141 0.859 32 H 0.149 0.851 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.029 0.971 43 H 0.261 0.739 44 H 0.033 0.967 45 H 0.029 0.971 46 H 0.068 0.932 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.184 14.997 11.464 24.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.084 5.084 3 C -0.127 4.127 4 C -0.233 4.233 5 C -0.177 4.177 6 C -0.155 4.155 7 C 0.376 3.624 8 O -0.422 6.422 9 N -0.327 5.327 10 C -0.029 4.029 11 C -0.176 4.176 12 C -0.140 4.140 13 C -0.087 4.087 14 C -0.159 4.159 15 C -0.019 4.019 16 N -0.336 5.336 17 C -0.364 4.364 18 H 0.110 0.890 19 C -0.181 4.181 20 N -0.553 5.553 21 Si 0.711 3.289 22 H -0.216 1.216 23 H -0.233 1.233 24 H -0.201 1.201 25 C 0.028 3.972 26 C 0.011 3.989 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.184 0.816 31 H 0.159 0.841 32 H 0.166 0.834 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.047 0.953 46 H 0.086 0.914 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.988 14.735 11.567 23.379 hybrid contribution 0.733 -0.690 -0.524 1.135 sum 14.721 14.045 11.044 23.150 Atomic orbital electron populations 1.22190 0.76010 1.04808 1.04074 1.43891 1.06864 1.05040 1.52579 1.21991 0.90734 0.91453 1.08479 1.20816 0.95945 0.95007 1.11509 1.21474 0.94549 0.95320 1.06394 1.20139 0.90601 0.87566 1.17227 1.17025 0.83646 0.83498 0.78226 1.90827 1.20837 1.83065 1.47426 1.47736 1.26037 1.06143 1.52829 1.22176 0.86584 1.02045 0.92088 1.21926 1.02746 0.96303 0.96636 1.21377 0.95946 0.95610 1.01039 1.21385 0.96449 0.96032 0.94830 1.22709 1.00247 0.93734 0.99168 1.22013 0.93898 0.92596 0.93395 1.44851 1.31709 1.02845 1.54179 1.18656 0.98344 1.01881 1.17500 0.89011 1.24779 0.96193 0.96973 1.00173 1.69907 1.16765 1.28009 1.40648 0.87072 0.83455 0.81190 0.77143 1.21554 1.23286 1.20068 1.21275 0.92047 0.90198 0.93637 1.21588 1.02517 0.78450 0.96391 0.90263 0.89789 0.88725 0.81575 0.84090 0.83396 0.87987 0.91425 0.90716 0.90804 0.92037 0.91043 0.91354 0.90925 0.92331 0.95333 0.92897 0.94866 0.95285 0.91407 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.43 59.85 0.62 1.33 16 2 N -0.41 -4.76 3.16 -120.23 -0.38 -5.14 16 3 C 0.01 0.08 11.38 -16.91 -0.19 -0.11 16 4 C -0.21 -1.94 10.81 -39.98 -0.43 -2.37 16 5 C -0.15 -1.60 8.45 -39.12 -0.33 -1.93 16 6 C -0.04 -0.54 6.34 -81.98 -0.52 -1.06 16 7 C 0.59 8.96 7.41 -12.85 -0.10 8.87 16 8 O -0.54 -10.01 14.96 5.19 0.08 -9.94 16 9 N -0.60 -8.05 2.86 -174.94 -0.50 -8.55 16 10 C 0.09 0.98 5.03 -3.95 -0.02 0.96 16 11 C -0.14 -1.63 5.89 -26.79 -0.16 -1.78 16 12 C -0.10 -1.39 4.59 -27.03 -0.12 -1.51 16 13 C -0.09 -1.37 0.53 -154.08 -0.08 -1.45 16 14 C -0.12 -2.01 5.99 -24.88 -0.15 -2.15 16 15 C 0.11 2.34 4.37 -2.43 -0.01 2.33 16 16 N -0.61 -15.23 3.31 -170.22 -0.56 -15.79 16 17 C -0.24 -6.97 10.59 -15.06 -0.16 -7.13 16 18 H 0.09 2.87 8.06 -52.48 -0.42 2.45 16 19 C 0.02 0.49 5.43 -17.43 -0.09 0.40 16 20 N -0.91 -28.77 13.97 55.49 0.78 -28.00 16 21 Si 0.88 22.96 24.31 -169.99 -4.13 18.82 16 22 H -0.29 -7.25 6.47 56.52 0.37 -6.88 16 23 H -0.30 -8.05 7.11 56.52 0.40 -7.65 16 24 H -0.27 -6.96 6.19 56.52 0.35 -6.61 16 25 C 0.15 3.20 6.14 -3.33 -0.02 3.18 16 26 C 0.13 1.90 5.02 -4.03 -0.02 1.88 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.17 7.11 -51.92 -0.37 0.81 16 30 H 0.17 0.99 8.06 -52.49 -0.42 0.56 16 31 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 32 H 0.15 1.27 6.39 -52.49 -0.34 0.93 16 33 H 0.10 1.00 4.38 -51.93 -0.23 0.78 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.04 6.34 -51.93 -0.33 0.71 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 1.12 7.52 -51.93 -0.39 0.73 16 39 H 0.07 0.95 8.01 -51.93 -0.42 0.53 16 40 H 0.07 1.20 8.02 -51.93 -0.42 0.78 16 41 H 0.06 1.40 5.84 -51.93 -0.30 1.10 16 42 H 0.03 0.65 5.36 -51.93 -0.28 0.37 16 43 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 44 H 0.03 0.76 7.66 -51.93 -0.40 0.36 16 45 H 0.03 0.62 6.01 -51.92 -0.31 0.31 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.10 1.60 6.82 -51.93 -0.35 1.24 16 LS Contribution 351.52 15.07 5.30 5.30 Total: -1.00 -35.30 351.52 -8.37 -43.67 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -7.16 Total: 0.17 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.78 Total: -0.55 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.67 Total: -57.48 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.13 Total: 18.82 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.30 -8.37 -43.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054088286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.059 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds