Wall clock time and date at job start Tue Mar 31 2020 11:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35531 * 125.67929 * 2 1 4 4 C 1.35452 * 108.87089 * 179.97438 * 3 2 1 5 5 C 1.39826 * 107.86571 * 359.78067 * 4 3 2 6 6 C 1.37655 * 125.67953 * 180.02562 * 2 1 3 7 7 C 1.46680 * 126.23093 * 359.96194 * 6 2 1 8 8 O 1.21700 * 119.99896 * 333.13351 * 7 6 2 9 9 N 1.34776 * 120.00036 * 153.40008 * 7 6 2 10 10 C 1.46939 * 120.70157 * 350.15241 * 9 7 6 11 11 C 1.52718 * 109.17630 * 234.11811 * 10 9 7 12 12 C 1.53169 * 109.35267 * 305.01488 * 11 10 9 13 13 C 1.52236 * 109.65152 * 60.04055 * 12 11 10 14 14 C 1.54486 * 110.28879 * 178.01572 * 13 12 11 15 15 C 1.55031 * 101.52794 * 276.20372 * 14 13 12 16 16 N 1.47485 * 104.90483 * 323.65588 * 15 14 13 17 17 C 1.36940 * 125.66202 * 203.99415 * 16 15 14 18 18 H 1.08004 * 120.00018 * 170.73959 * 17 16 15 19 19 C 1.38815 * 119.99925 * 350.72794 * 17 16 15 20 20 N 1.31620 * 119.99733 * 154.61532 * 19 17 16 21 21 Si 1.86794 * 119.99997 * 334.61778 * 19 17 16 22 22 H 1.48505 * 109.46870 * 88.96695 * 21 19 17 23 23 H 1.48503 * 109.47127 * 208.95907 * 21 19 17 24 24 H 1.48490 * 109.47409 * 328.96337 * 21 19 17 25 25 C 1.47181 * 108.67747 * 24.00956 * 16 15 14 26 26 C 1.47082 * 120.70477 * 170.42429 * 9 7 6 27 27 H 1.09005 * 109.47423 * 269.72759 * 1 2 3 28 28 H 1.09001 * 109.47607 * 29.72586 * 1 2 3 29 29 H 1.09008 * 109.47430 * 149.72736 * 1 2 3 30 30 H 1.08000 * 125.56342 * 0.04134 * 3 2 1 31 31 H 1.08004 * 126.06100 * 180.02562 * 4 3 2 32 32 H 1.08000 * 126.45826 * 180.25095 * 5 4 3 33 33 H 1.08994 * 109.56257 * 353.99981 * 10 9 7 34 34 H 1.09000 * 109.56332 * 114.33744 * 10 9 7 35 35 H 1.08999 * 109.57917 * 184.98966 * 11 10 9 36 36 H 1.09003 * 109.35898 * 64.90996 * 11 10 9 37 37 H 1.09000 * 109.44260 * 299.98402 * 12 11 10 38 38 H 1.08998 * 109.41274 * 180.02562 * 12 11 10 39 39 H 1.08995 * 111.01554 * 34.26033 * 14 13 12 40 40 H 1.09001 * 111.01312 * 158.14205 * 14 13 12 41 41 H 1.09000 * 110.35629 * 204.80171 * 15 14 13 42 42 H 1.09000 * 110.44356 * 82.55862 * 15 14 13 43 43 H 0.97003 * 119.99621 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.91535 * 239.10327 * 25 16 15 45 45 H 1.09008 * 109.91397 * 117.83457 * 25 16 15 46 46 H 1.09005 * 109.57880 * 247.33788 * 26 9 7 47 47 H 1.09003 * 109.57876 * 7.73653 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1009 0.0000 4 6 3.5521 0.7092 0.0006 5 6 3.5779 -0.6888 0.0060 6 6 2.2678 -1.1182 -0.0005 7 6 1.8124 -2.5125 -0.0003 8 8 0.7300 -2.7990 0.4765 9 7 2.5949 -3.4771 -0.5234 10 6 3.8021 -3.1320 -1.2869 11 6 3.7433 -3.8124 -2.6528 12 6 3.5448 -5.3191 -2.4612 13 6 2.2434 -5.5729 -1.7132 14 6 2.0036 -7.0909 -1.5554 15 6 1.3458 -7.4436 -2.9142 16 7 0.5050 -6.2773 -3.2427 17 6 -0.5905 -6.2889 -4.0644 18 1 -1.2286 -5.4197 -4.1259 19 6 -0.8806 -7.4177 -4.8184 20 7 -2.1178 -7.6538 -5.2004 21 14 0.4849 -8.6015 -5.2909 22 1 0.6395 -9.6280 -4.2290 23 1 0.1426 -9.2651 -6.5746 24 1 1.7580 -7.8528 -5.4447 25 6 1.0388 -5.0987 -2.5411 26 6 2.2555 -4.8973 -0.3473 27 1 -0.3634 -0.0049 1.0277 28 1 -0.3634 0.8924 -0.5096 29 1 -0.3634 -0.8876 -0.5181 30 1 1.9082 2.1235 0.0006 31 1 4.4132 1.3612 0.0011 32 1 4.4582 -1.3144 0.0116 33 1 3.8526 -2.0515 -1.4210 34 1 4.6852 -3.4763 -0.7487 35 1 4.6746 -3.6336 -3.1903 36 1 2.9089 -3.4052 -3.2238 37 1 4.3781 -5.7248 -1.8875 38 1 3.5032 -5.8058 -3.4356 39 1 2.9455 -7.6242 -1.4271 40 1 1.3245 -7.2953 -0.7277 41 1 0.7313 -8.3386 -2.8171 42 1 2.1080 -7.5891 -3.6798 43 1 -2.3206 -8.4428 -5.7270 44 1 0.2768 -4.6819 -1.8826 45 1 1.3581 -4.3488 -3.2649 46 1 3.0002 -5.3746 0.2897 47 1 1.2705 -4.9832 0.1115 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054088286.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:54 Heat of formation + Delta-G solvation = 35.373576 kcal Electronic energy + Delta-G solvation = -28017.725507 eV Core-core repulsion = 24394.632452 eV Total energy + Delta-G solvation = -3623.093056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.48638 -41.29707 -39.55760 -37.47730 -35.00898 -33.85747 -33.23743 -32.54834 -30.86458 -29.87109 -27.81768 -27.46666 -26.67723 -25.21826 -23.47684 -22.89272 -22.41453 -21.57656 -20.16515 -19.50986 -18.88774 -18.16820 -17.48051 -17.23943 -16.79986 -16.54962 -16.35847 -15.70511 -15.63492 -15.36782 -15.00035 -14.69303 -14.56414 -14.35818 -14.16433 -14.05266 -13.88628 -13.75956 -13.45669 -13.29702 -13.22296 -13.02706 -12.93390 -12.72699 -12.57905 -12.24649 -12.04413 -11.96586 -11.73733 -11.39284 -11.36544 -11.22683 -10.98221 -10.84827 -9.68550 -9.61358 -9.15467 -9.08943 -8.21135 -5.43079 0.54775 1.26576 1.35836 1.45286 1.57406 1.87107 2.26095 2.31437 2.38321 2.96176 3.28196 3.48078 3.58159 3.77128 3.83132 3.91883 4.08118 4.15484 4.22227 4.22521 4.29763 4.36578 4.43824 4.50497 4.54529 4.59607 4.63635 4.66628 4.69381 4.75842 4.80500 4.90297 4.94760 5.00027 5.10402 5.14085 5.19810 5.22066 5.28676 5.45155 5.47773 5.52831 5.56886 5.89343 6.03589 6.03683 6.32193 6.40200 6.70961 7.09651 7.50593 8.05878 8.98349 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020081 B = 0.003826 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.035424 B = 7317.092130 C = 7939.373500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.426 5.426 3 C 0.017 3.983 4 C -0.215 4.215 5 C -0.136 4.136 6 C -0.087 4.087 7 C 0.577 3.423 8 O -0.595 6.595 9 N -0.595 5.595 10 C 0.094 3.906 11 C -0.135 4.135 12 C -0.099 4.099 13 C -0.072 4.072 14 C -0.108 4.108 15 C 0.097 3.903 16 N -0.628 5.628 17 C -0.242 4.242 18 H 0.047 0.953 19 C -0.042 4.042 20 N -0.958 5.958 21 Si 0.955 3.045 22 H -0.269 1.269 23 H -0.308 1.308 24 H -0.259 1.259 25 C 0.156 3.844 26 C 0.137 3.863 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.058 0.942 30 H 0.201 0.799 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.037 0.963 37 H 0.104 0.896 38 H 0.051 0.949 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.263 0.737 44 H -0.003 1.003 45 H 0.021 0.979 46 H 0.108 0.892 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.462 15.614 12.562 28.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.099 5.099 3 C -0.118 4.118 4 C -0.239 4.239 5 C -0.162 4.162 6 C -0.200 4.200 7 C 0.368 3.632 8 O -0.477 6.477 9 N -0.326 5.326 10 C -0.027 4.027 11 C -0.173 4.173 12 C -0.137 4.137 13 C -0.074 4.074 14 C -0.146 4.146 15 C -0.027 4.027 16 N -0.355 5.355 17 C -0.371 4.371 18 H 0.065 0.935 19 C -0.236 4.236 20 N -0.605 5.605 21 Si 0.782 3.218 22 H -0.195 1.195 23 H -0.236 1.236 24 H -0.184 1.184 25 C 0.031 3.969 26 C 0.015 3.985 27 H 0.098 0.902 28 H 0.134 0.866 29 H 0.077 0.923 30 H 0.217 0.783 31 H 0.188 0.812 32 H 0.188 0.812 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.056 0.944 37 H 0.122 0.878 38 H 0.070 0.930 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.015 0.985 45 H 0.039 0.961 46 H 0.126 0.874 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.336 15.355 12.676 27.755 hybrid contribution -1.007 -0.721 -0.857 1.506 sum 18.328 14.635 11.820 26.264 Atomic orbital electron populations 1.22160 0.76108 1.04568 1.04070 1.44114 1.07190 1.05518 1.53117 1.22705 0.90789 0.92212 1.06129 1.21235 0.96844 0.94770 1.11011 1.21823 0.93956 0.96333 1.04081 1.20085 0.92035 0.86809 1.21065 1.17528 0.83092 0.84900 0.77657 1.90788 1.23073 1.83963 1.49903 1.47857 1.26693 1.05464 1.52597 1.22430 0.86332 1.02627 0.91294 1.21922 1.02918 0.95086 0.97353 1.21410 0.95333 0.96811 1.00119 1.21337 0.95412 0.95510 0.95113 1.22721 1.01882 0.94363 0.95683 1.22190 0.93312 0.90542 0.96673 1.44954 1.31339 1.05620 1.53546 1.18557 0.99436 1.00574 1.18521 0.93474 1.25536 0.98456 0.99349 1.00296 1.70044 1.19040 1.29357 1.42051 0.85885 0.80242 0.78979 0.76661 1.19522 1.23637 1.18381 1.21336 0.93385 0.88982 0.93162 1.21484 1.02178 0.79421 0.95460 0.90188 0.86600 0.92302 0.78261 0.81221 0.81168 0.87248 0.87474 0.87398 0.94412 0.87753 0.93044 0.86566 0.91107 0.94437 0.94577 0.92834 0.98456 0.96123 0.87373 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.53 10.43 127.77 1.33 2.86 16 2 N -0.43 -9.66 3.16 -534.31 -1.69 -11.35 16 3 C 0.02 0.26 11.38 83.48 0.95 1.21 16 4 C -0.22 -3.22 10.81 22.01 0.24 -2.98 16 5 C -0.14 -2.47 8.45 22.57 0.19 -2.28 16 6 C -0.09 -2.23 6.34 40.35 0.26 -1.97 16 7 C 0.58 18.16 7.41 86.45 0.64 18.80 16 8 O -0.59 -23.79 14.96 -4.35 -0.07 -23.85 16 9 N -0.60 -15.45 2.86 -825.61 -2.36 -17.81 16 10 C 0.09 1.64 5.03 86.20 0.43 2.07 16 11 C -0.13 -2.76 5.89 30.56 0.18 -2.59 16 12 C -0.10 -2.32 4.59 30.40 0.14 -2.18 16 13 C -0.07 -2.20 0.53 -51.91 -0.03 -2.23 16 14 C -0.11 -3.34 5.99 31.79 0.19 -3.15 16 15 C 0.10 4.18 4.37 86.89 0.38 4.56 16 16 N -0.63 -32.59 3.31 -692.47 -2.29 -34.88 16 17 C -0.24 -15.16 10.59 84.03 0.89 -14.27 16 18 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 19 C -0.04 -2.64 5.43 84.86 0.46 -2.18 16 20 N -0.96 -63.54 13.97 21.65 0.30 -63.24 16 21 Si 0.95 48.31 24.31 68.60 1.67 49.98 16 22 H -0.27 -12.74 6.47 99.48 0.64 -12.10 16 23 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 24 H -0.26 -12.32 6.19 99.48 0.62 -11.71 16 25 C 0.16 6.84 6.14 86.47 0.53 7.37 16 26 C 0.14 3.74 5.02 86.07 0.43 4.18 16 27 H 0.08 1.61 8.14 -2.38 -0.02 1.60 16 28 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.66 7.11 -2.38 -0.02 1.64 16 30 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 32 H 0.17 2.16 6.39 -2.91 -0.02 2.14 16 33 H 0.11 1.79 4.38 -2.39 -0.01 1.78 16 34 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.04 1.05 6.34 -2.39 -0.02 1.03 16 37 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.05 1.44 7.52 -2.39 -0.02 1.42 16 39 H 0.12 2.57 8.01 -2.39 -0.02 2.55 16 40 H 0.07 2.22 8.02 -2.39 -0.02 2.20 16 41 H 0.04 1.77 5.84 -2.39 -0.01 1.75 16 42 H 0.04 1.53 5.36 -2.39 -0.01 1.52 16 43 H 0.26 16.40 8.31 -92.71 -0.77 15.63 16 44 H 0.00 -0.13 7.66 -2.39 -0.02 -0.15 16 45 H 0.02 0.94 6.01 -2.38 -0.01 0.92 16 46 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 47 H 0.06 2.14 6.82 -2.39 -0.02 2.13 16 Total: -1.00 -85.84 351.52 3.60 -82.24 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.82 Total: 11.69 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 7.22 Total: 7.22 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -6.04 Total: -127.28 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.07 Total: -23.85 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 1.67 Total: 49.98 kcal Total: -85.84 3.60 -82.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054088286.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.613 kcal (2) G-P(sol) polarization free energy of solvation -85.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds