Wall clock time and date at job start Tue Mar 31 2020 11:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36440 * 124.85514 * 2 1 4 4 C 1.34487 * 108.86084 * 179.72904 * 3 2 1 5 5 C 1.46692 * 106.32803 * 0.43541 * 4 3 2 6 6 C 1.47266 * 126.94193 * 179.82729 * 5 4 3 7 7 O 1.21626 * 119.99862 * 219.25519 * 6 5 4 8 8 N 1.34770 * 119.99699 * 39.25813 * 6 5 4 9 9 C 1.46935 * 120.71181 * 176.47919 * 8 6 5 10 10 C 1.53198 * 108.93535 * 234.27239 * 9 8 6 11 11 C 1.53184 * 109.27216 * 304.68659 * 10 9 8 12 12 C 1.52065 * 109.68296 * 59.95882 * 11 10 9 13 13 C 1.54571 * 110.52880 * 177.47813 * 12 11 10 14 14 C 1.54459 * 102.75673 * 276.32252 * 13 12 11 15 15 N 1.47085 * 107.42384 * 338.69999 * 14 13 12 16 16 C 1.36945 * 125.62492 * 178.88692 * 15 14 13 17 17 H 1.08001 * 119.99997 * 180.02562 * 16 15 14 18 18 C 1.38808 * 120.00006 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00076 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99908 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47209 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47245 * 120.00497 * 20 18 16 23 23 H 1.48508 * 109.47207 * 240.00211 * 20 18 16 24 24 C 1.47576 * 108.75028 * 358.91925 * 15 14 13 25 25 C 1.47106 * 120.71474 * 356.49532 * 8 6 5 26 26 C 1.34660 * 124.84632 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47147 * 269.97769 * 1 2 3 28 28 H 1.08999 * 109.47132 * 29.98009 * 1 2 3 29 29 H 1.08998 * 109.47268 * 149.97482 * 1 2 3 30 30 H 1.08006 * 125.57163 * 0.02562 * 3 2 1 31 31 H 1.07997 * 126.83823 * 180.26816 * 4 3 2 32 32 H 1.09000 * 109.56802 * 114.43450 * 9 8 6 33 33 H 1.09000 * 109.65161 * 354.15643 * 9 8 6 34 34 H 1.08996 * 109.49990 * 184.74205 * 10 9 8 35 35 H 1.08997 * 109.53232 * 64.64480 * 10 9 8 36 36 H 1.09004 * 109.43858 * 299.88985 * 11 10 9 37 37 H 1.09003 * 109.40070 * 180.02562 * 11 10 9 38 38 H 1.09006 * 110.71392 * 158.04949 * 13 12 11 39 39 H 1.09003 * 110.85968 * 34.66902 * 13 12 11 40 40 H 1.08998 * 109.88255 * 219.19730 * 14 13 12 41 41 H 1.09008 * 109.88099 * 98.20075 * 14 13 12 42 42 H 0.97006 * 119.99915 * 179.97438 * 19 18 16 43 43 H 1.08997 * 110.37928 * 142.11730 * 24 15 14 44 44 H 1.08996 * 110.37829 * 264.47891 * 24 15 14 45 45 H 1.08997 * 109.57584 * 7.92566 * 25 8 6 46 46 H 1.09000 * 109.57808 * 247.53153 * 25 8 6 47 47 H 1.07999 * 125.80619 * 359.95788 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1196 0.0000 4 6 3.5376 0.7491 0.0060 5 6 3.5461 -0.7178 -0.0007 6 6 4.7283 -1.5960 -0.0012 7 8 4.7321 -2.6103 -0.6724 8 7 5.8059 -1.2757 0.7421 9 6 6.9632 -2.1782 0.8138 10 6 7.2665 -2.4819 2.2844 11 6 7.4662 -1.1654 3.0418 12 6 6.2035 -0.3234 2.9472 13 6 6.3611 0.9830 3.7582 14 6 6.0009 0.5393 5.1931 15 7 5.2032 -0.6919 5.0863 16 6 4.7061 -1.4141 6.1382 17 1 4.1298 -2.3088 5.9546 18 6 4.9431 -0.9963 7.4406 19 7 5.6451 0.0944 7.6644 20 14 4.2656 -1.9818 8.8755 21 1 3.5175 -3.1565 8.3599 22 1 5.3874 -2.4463 9.7305 23 1 3.3538 -1.1264 9.6769 24 6 5.0277 -1.0209 3.6584 25 6 5.8487 -0.0152 1.4993 26 6 2.2344 -1.1051 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5142 30 1 1.8829 2.1373 0.0004 31 1 4.3981 1.4015 0.0116 32 1 7.8281 -1.7000 0.3541 33 1 6.7374 -3.1063 0.2887 34 1 8.1736 -3.0822 2.3524 35 1 6.4330 -3.0309 2.7225 36 1 8.3009 -0.6180 2.6037 37 1 7.6826 -1.3791 4.0885 38 1 5.6654 1.7434 3.4033 39 1 7.3877 1.3465 3.7128 40 1 5.4178 1.3170 5.6863 41 1 6.9111 0.3431 5.7600 42 1 5.8104 0.3866 8.5745 43 1 5.0791 -2.0993 3.5083 44 1 4.0778 -0.6308 3.2930 45 1 4.8731 0.4692 1.4575 46 1 6.6042 0.6431 1.0704 47 1 1.8766 -2.1241 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054116372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:04 Heat of formation + Delta-G solvation = 51.661889 kcal Electronic energy + Delta-G solvation = -28065.919074 eV Core-core repulsion = 24443.532333 eV Total energy + Delta-G solvation = -3622.386741 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.30558 -39.87152 -38.09460 -35.49385 -33.24366 -32.70996 -31.74600 -30.04790 -29.20056 -28.39726 -26.93031 -25.55153 -25.25852 -23.55313 -22.51338 -21.19700 -20.36695 -19.91068 -19.02026 -18.10737 -17.17103 -16.79150 -16.13218 -15.46147 -15.41254 -14.96839 -14.55268 -14.53364 -14.08664 -13.89460 -13.63676 -13.26540 -13.10699 -13.02452 -12.81871 -12.70840 -12.40576 -12.26670 -11.95514 -11.87915 -11.73747 -11.53506 -10.97907 -10.86629 -10.79019 -10.61025 -10.55215 -10.05907 -9.96300 -9.77966 -9.59964 -9.57747 -9.53380 -8.54351 -8.52065 -8.38927 -8.15216 -6.74051 -5.65915 -2.97671 1.99341 2.45060 2.76077 3.28285 3.41639 3.47654 3.49732 3.61879 4.54180 4.55335 4.82643 4.91270 4.93297 5.02173 5.11830 5.18139 5.23270 5.33700 5.39621 5.48350 5.50405 5.56022 5.68566 5.76886 5.87715 5.90781 5.99140 6.02145 6.04113 6.08561 6.20537 6.23597 6.38601 6.48073 6.59194 6.73141 6.73351 6.80610 6.83220 6.93397 7.03770 7.05142 7.19875 7.62725 7.69608 7.73904 7.88797 8.32420 8.51949 9.28890 9.89412 10.56690 11.45892 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012153 B = 0.004587 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.394028 B = 6103.197089 C = 7190.340576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.448 5.448 3 C -0.015 4.015 4 C -0.171 4.171 5 C -0.222 4.222 6 C 0.595 3.405 7 O -0.560 6.560 8 N -0.599 5.599 9 C 0.115 3.885 10 C -0.135 4.135 11 C -0.096 4.096 12 C -0.086 4.086 13 C -0.133 4.133 14 C 0.180 3.820 15 N -0.604 5.604 16 C -0.221 4.221 17 H 0.075 0.925 18 C -0.010 4.010 19 N -0.923 5.923 20 Si 0.908 3.092 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.153 3.847 25 C 0.112 3.888 26 C 0.064 3.936 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.166 0.834 31 H 0.148 0.852 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.039 0.961 41 H 0.045 0.955 42 H 0.250 0.750 43 H 0.037 0.963 44 H 0.014 0.986 45 H 0.105 0.895 46 H 0.061 0.939 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 3.171 -16.588 17.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.124 5.124 3 C -0.142 4.142 4 C -0.195 4.195 5 C -0.232 4.232 6 C 0.385 3.615 7 O -0.440 6.440 8 N -0.330 5.330 9 C -0.008 4.008 10 C -0.173 4.173 11 C -0.134 4.134 12 C -0.088 4.088 13 C -0.172 4.172 14 C 0.056 3.944 15 N -0.330 5.330 16 C -0.349 4.349 17 H 0.093 0.907 18 C -0.206 4.206 19 N -0.571 5.571 20 Si 0.739 3.261 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.219 1.219 24 C 0.027 3.973 25 C -0.010 4.010 26 C -0.070 4.070 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.183 0.817 31 H 0.166 0.834 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.032 0.968 45 H 0.122 0.878 46 H 0.079 0.921 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.616 2.665 -16.705 17.535 hybrid contribution -0.349 -0.328 1.056 1.160 sum -4.965 2.337 -15.649 16.583 Atomic orbital electron populations 1.22097 0.77056 1.04357 1.03670 1.43537 1.06653 1.05875 1.56322 1.21723 0.90555 0.91237 1.10649 1.22039 0.96093 0.92971 1.08363 1.20247 0.92456 0.93582 1.16913 1.17429 0.81631 0.84059 0.78344 1.90727 1.82293 1.27752 1.43270 1.47916 1.16709 1.21491 1.46929 1.21552 0.87435 0.94593 0.97186 1.21974 1.02102 0.98499 0.94691 1.21230 0.95993 0.94716 1.01445 1.21436 0.97031 0.97038 0.93245 1.22854 1.00238 0.95332 0.98815 1.21118 0.95524 0.88399 0.89386 1.44514 1.61817 1.27156 0.99495 1.19086 1.26641 1.04754 0.84452 0.90705 1.24753 1.00727 0.97965 0.97114 1.69980 1.44058 1.24128 1.18932 0.86097 0.78108 0.79073 0.82844 1.20628 1.21836 1.21886 1.21434 0.93489 0.96924 0.85421 1.22058 1.03436 0.84952 0.90592 1.21622 0.89623 0.91644 1.04133 0.90538 0.89738 0.89774 0.81692 0.83444 0.92026 0.89504 0.91256 0.90999 0.92787 0.90487 0.92446 0.92079 0.94269 0.93727 0.93972 0.94448 0.96824 0.87758 0.92056 0.81316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 11.03 59.85 0.66 1.10 16 2 N -0.45 -4.75 3.09 -124.53 -0.38 -5.13 16 3 C -0.01 -0.16 11.34 -16.83 -0.19 -0.35 16 4 C -0.17 -2.12 8.63 -37.50 -0.32 -2.44 16 5 C -0.22 -3.29 5.54 -103.35 -0.57 -3.86 16 6 C 0.60 10.04 7.62 -12.59 -0.10 9.95 16 7 O -0.56 -10.92 16.52 5.25 0.09 -10.83 16 8 N -0.60 -9.24 2.87 -174.52 -0.50 -9.74 16 9 C 0.11 1.64 6.40 -3.70 -0.02 1.62 16 10 C -0.13 -2.01 5.91 -26.53 -0.16 -2.17 16 11 C -0.10 -1.57 4.64 -27.11 -0.13 -1.70 16 12 C -0.09 -1.47 0.55 -153.97 -0.08 -1.55 16 13 C -0.13 -2.41 5.91 -25.14 -0.15 -2.56 16 14 C 0.18 4.33 5.02 -2.96 -0.01 4.32 16 15 N -0.60 -15.38 3.39 -170.32 -0.58 -15.96 16 16 C -0.22 -6.21 10.28 -15.06 -0.15 -6.37 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -27.16 10.30 55.49 0.57 -26.59 16 20 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 C 0.15 3.25 5.96 -2.88 -0.02 3.23 16 25 C 0.11 1.63 4.36 -4.10 -0.02 1.62 16 26 C 0.06 0.83 11.29 -16.84 -0.19 0.64 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.08 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.17 1.24 8.06 -52.48 -0.42 0.82 16 31 H 0.15 1.61 6.99 -52.49 -0.37 1.25 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.30 7.03 -51.93 -0.36 0.94 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.24 6.33 -51.93 -0.33 0.91 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 1.49 7.85 -51.93 -0.41 1.08 16 38 H 0.06 0.96 8.01 -51.93 -0.42 0.54 16 39 H 0.06 0.99 8.01 -51.93 -0.42 0.58 16 40 H 0.04 1.05 7.50 -51.93 -0.39 0.66 16 41 H 0.04 1.19 7.38 -51.92 -0.38 0.80 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.04 0.83 6.10 -51.93 -0.32 0.51 16 44 H 0.01 0.31 7.87 -51.93 -0.41 -0.10 16 45 H 0.10 1.52 3.81 -51.93 -0.20 1.32 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 363.12 15.07 5.47 5.47 Total: -1.00 -34.20 363.12 -9.25 -43.45 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.35 Total: 0.87 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.55 Total: 1.11 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.89 Total: -57.42 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.20 -9.25 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054116372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.114 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds