Wall clock time and date at job start Tue Mar 31 2020 11:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36440 * 124.85514 * 2 1 4 4 C 1.34487 * 108.86084 * 179.72904 * 3 2 1 5 5 C 1.46692 * 106.32803 * 0.43541 * 4 3 2 6 6 C 1.47266 * 126.94193 * 179.82729 * 5 4 3 7 7 O 1.21626 * 119.99862 * 219.25519 * 6 5 4 8 8 N 1.34770 * 119.99699 * 39.25813 * 6 5 4 9 9 C 1.46935 * 120.71181 * 176.47919 * 8 6 5 10 10 C 1.53198 * 108.93535 * 234.27239 * 9 8 6 11 11 C 1.53184 * 109.27216 * 304.68659 * 10 9 8 12 12 C 1.52065 * 109.68296 * 59.95882 * 11 10 9 13 13 C 1.54571 * 110.52880 * 177.47813 * 12 11 10 14 14 C 1.54459 * 102.75673 * 276.32252 * 13 12 11 15 15 N 1.47085 * 107.42384 * 338.69999 * 14 13 12 16 16 C 1.36945 * 125.62492 * 178.88692 * 15 14 13 17 17 H 1.08001 * 119.99997 * 180.02562 * 16 15 14 18 18 C 1.38808 * 120.00006 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00076 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99908 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47209 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47245 * 120.00497 * 20 18 16 23 23 H 1.48508 * 109.47207 * 240.00211 * 20 18 16 24 24 C 1.47576 * 108.75028 * 358.91925 * 15 14 13 25 25 C 1.47106 * 120.71474 * 356.49532 * 8 6 5 26 26 C 1.34660 * 124.84632 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47147 * 269.97769 * 1 2 3 28 28 H 1.08999 * 109.47132 * 29.98009 * 1 2 3 29 29 H 1.08998 * 109.47268 * 149.97482 * 1 2 3 30 30 H 1.08006 * 125.57163 * 0.02562 * 3 2 1 31 31 H 1.07997 * 126.83823 * 180.26816 * 4 3 2 32 32 H 1.09000 * 109.56802 * 114.43450 * 9 8 6 33 33 H 1.09000 * 109.65161 * 354.15643 * 9 8 6 34 34 H 1.08996 * 109.49990 * 184.74205 * 10 9 8 35 35 H 1.08997 * 109.53232 * 64.64480 * 10 9 8 36 36 H 1.09004 * 109.43858 * 299.88985 * 11 10 9 37 37 H 1.09003 * 109.40070 * 180.02562 * 11 10 9 38 38 H 1.09006 * 110.71392 * 158.04949 * 13 12 11 39 39 H 1.09003 * 110.85968 * 34.66902 * 13 12 11 40 40 H 1.08998 * 109.88255 * 219.19730 * 14 13 12 41 41 H 1.09008 * 109.88099 * 98.20075 * 14 13 12 42 42 H 0.97006 * 119.99915 * 179.97438 * 19 18 16 43 43 H 1.08997 * 110.37928 * 142.11730 * 24 15 14 44 44 H 1.08996 * 110.37829 * 264.47891 * 24 15 14 45 45 H 1.08997 * 109.57584 * 7.92566 * 25 8 6 46 46 H 1.09000 * 109.57808 * 247.53153 * 25 8 6 47 47 H 1.07999 * 125.80619 * 359.95788 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1196 0.0000 4 6 3.5376 0.7491 0.0060 5 6 3.5461 -0.7178 -0.0007 6 6 4.7283 -1.5960 -0.0012 7 8 4.7321 -2.6103 -0.6724 8 7 5.8059 -1.2757 0.7421 9 6 6.9632 -2.1782 0.8138 10 6 7.2665 -2.4819 2.2844 11 6 7.4662 -1.1654 3.0418 12 6 6.2035 -0.3234 2.9472 13 6 6.3611 0.9830 3.7582 14 6 6.0009 0.5393 5.1931 15 7 5.2032 -0.6919 5.0863 16 6 4.7061 -1.4141 6.1382 17 1 4.1298 -2.3088 5.9546 18 6 4.9431 -0.9963 7.4406 19 7 5.6451 0.0944 7.6644 20 14 4.2656 -1.9818 8.8755 21 1 3.5175 -3.1565 8.3599 22 1 5.3874 -2.4463 9.7305 23 1 3.3538 -1.1264 9.6769 24 6 5.0277 -1.0209 3.6584 25 6 5.8487 -0.0152 1.4993 26 6 2.2344 -1.1051 -0.0005 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3633 0.8902 -0.5135 29 1 -0.3634 -0.8897 -0.5142 30 1 1.8829 2.1373 0.0004 31 1 4.3981 1.4015 0.0116 32 1 7.8281 -1.7000 0.3541 33 1 6.7374 -3.1063 0.2887 34 1 8.1736 -3.0822 2.3524 35 1 6.4330 -3.0309 2.7225 36 1 8.3009 -0.6180 2.6037 37 1 7.6826 -1.3791 4.0885 38 1 5.6654 1.7434 3.4033 39 1 7.3877 1.3465 3.7128 40 1 5.4178 1.3170 5.6863 41 1 6.9111 0.3431 5.7600 42 1 5.8104 0.3866 8.5745 43 1 5.0791 -2.0993 3.5083 44 1 4.0778 -0.6308 3.2930 45 1 4.8731 0.4692 1.4575 46 1 6.6042 0.6431 1.0704 47 1 1.8766 -2.1241 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054116372.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:03 Heat of formation + Delta-G solvation = 31.311402 kcal Electronic energy + Delta-G solvation = -28066.801537 eV Core-core repulsion = 24443.532333 eV Total energy + Delta-G solvation = -3623.269205 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.24616 -41.13743 -39.52894 -37.06432 -34.61078 -34.14379 -32.87927 -31.87543 -30.12228 -30.03991 -27.79610 -27.40714 -26.37293 -25.25853 -23.67453 -22.47828 -21.84623 -21.05806 -20.24168 -19.34829 -18.81708 -18.21588 -17.32114 -16.83097 -16.49474 -16.35995 -16.20490 -15.88004 -15.48040 -15.02763 -14.92522 -14.68103 -14.36848 -14.16130 -13.95780 -13.88353 -13.69946 -13.38547 -13.21153 -13.13385 -12.98237 -12.89922 -12.79204 -12.72178 -12.25960 -12.14308 -12.02928 -11.97900 -11.67555 -11.51901 -11.23597 -11.09906 -10.81435 -10.67578 -9.59828 -9.34670 -9.18271 -8.84397 -7.83892 -5.17472 0.94694 1.43066 1.43741 1.53939 1.57446 1.90410 2.22678 2.48175 2.49403 3.33494 3.60725 3.69338 3.86930 3.97249 4.03098 4.06051 4.09963 4.16077 4.25292 4.34970 4.43054 4.47963 4.51996 4.62473 4.66570 4.72572 4.75511 4.83136 4.84267 4.87266 4.93697 4.96657 5.08599 5.10761 5.17287 5.23639 5.27025 5.44896 5.46791 5.56006 5.64951 5.76374 5.83332 5.83415 6.14202 6.22832 6.41182 6.54162 7.13707 7.28566 7.81082 8.45992 9.26211 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012153 B = 0.004587 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.394028 B = 6103.197089 C = 7190.340576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.445 5.445 3 C -0.007 4.007 4 C -0.187 4.187 5 C -0.257 4.257 6 C 0.589 3.411 7 O -0.599 6.599 8 N -0.600 5.600 9 C 0.116 3.884 10 C -0.127 4.127 11 C -0.093 4.093 12 C -0.073 4.073 13 C -0.117 4.117 14 C 0.188 3.812 15 N -0.621 5.621 16 C -0.238 4.238 17 H 0.070 0.930 18 C -0.062 4.062 19 N -0.947 5.947 20 Si 0.972 3.028 21 H -0.271 1.271 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.156 3.844 25 C 0.120 3.880 26 C 0.050 3.950 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.201 0.799 31 H 0.162 0.838 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.039 0.961 36 H 0.087 0.913 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.003 0.997 41 H 0.010 0.990 42 H 0.246 0.754 43 H 0.022 0.978 44 H 0.007 0.993 45 H 0.108 0.892 46 H 0.097 0.903 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 4.563 -18.151 19.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.120 5.120 3 C -0.135 4.135 4 C -0.210 4.210 5 C -0.267 4.267 6 C 0.380 3.620 7 O -0.482 6.482 8 N -0.330 5.330 9 C -0.006 4.006 10 C -0.165 4.165 11 C -0.130 4.130 12 C -0.075 4.075 13 C -0.156 4.156 14 C 0.063 3.937 15 N -0.348 5.348 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.255 4.255 19 N -0.597 5.597 20 Si 0.801 3.199 21 H -0.196 1.196 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.031 3.969 25 C -0.002 4.002 26 C -0.086 4.086 27 H 0.098 0.902 28 H 0.129 0.871 29 H 0.114 0.886 30 H 0.218 0.782 31 H 0.180 0.820 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.021 0.979 41 H 0.028 0.972 42 H 0.056 0.944 43 H 0.040 0.960 44 H 0.024 0.976 45 H 0.126 0.874 46 H 0.115 0.885 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -4.843 4.067 -18.284 19.347 hybrid contribution -0.361 -0.786 1.558 1.782 sum -5.204 3.281 -16.726 17.822 Atomic orbital electron populations 1.22407 0.74558 1.06354 1.04478 1.43851 1.08221 1.05164 1.54729 1.22317 0.90128 0.92543 1.08488 1.22259 0.97594 0.91793 1.09363 1.20345 0.92292 0.94842 1.19201 1.17836 0.82343 0.83833 0.77954 1.90690 1.82994 1.29449 1.45030 1.48002 1.16702 1.21855 1.46418 1.21611 0.88078 0.94530 0.96350 1.21897 1.01887 0.97825 0.94885 1.21200 0.96594 0.95599 0.99654 1.21359 0.95519 0.96000 0.94575 1.22733 1.02326 0.96043 0.94479 1.20900 0.93074 0.86897 0.92803 1.44782 1.61684 1.27539 1.00746 1.19374 1.26635 1.04960 0.85777 0.91199 1.25529 1.01384 0.99124 0.99456 1.70190 1.45077 1.25413 1.18999 0.85104 0.77373 0.77946 0.79501 1.19609 1.21766 1.21686 1.21491 0.95108 0.96476 0.83806 1.22076 1.04829 0.84977 0.88362 1.21771 0.89829 0.92652 1.04325 0.90244 0.87119 0.88584 0.78230 0.82033 0.89018 0.90591 0.89046 0.94215 0.89453 0.94153 0.90383 0.89320 0.97920 0.97188 0.94447 0.95980 0.97560 0.87420 0.88540 0.81149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 11.03 127.77 1.41 2.04 16 2 N -0.45 -8.55 3.09 -547.89 -1.69 -10.24 16 3 C -0.01 -0.14 11.34 83.12 0.94 0.81 16 4 C -0.19 -4.23 8.63 23.62 0.20 -4.02 16 5 C -0.26 -7.43 5.54 -19.04 -0.11 -7.53 16 6 C 0.59 19.74 7.62 86.62 0.66 20.40 16 7 O -0.60 -23.75 16.52 -4.11 -0.07 -23.82 16 8 N -0.60 -17.62 2.87 -824.32 -2.37 -19.99 16 9 C 0.12 3.13 6.40 86.36 0.55 3.68 16 10 C -0.13 -3.68 5.91 30.72 0.18 -3.49 16 11 C -0.09 -2.89 4.64 30.35 0.14 -2.75 16 12 C -0.07 -2.39 0.55 -51.84 -0.03 -2.42 16 13 C -0.12 -4.01 5.91 31.62 0.19 -3.83 16 14 C 0.19 9.24 5.02 86.76 0.44 9.68 16 15 N -0.62 -32.63 3.39 -692.76 -2.35 -34.98 16 16 C -0.24 -13.83 10.28 84.03 0.86 -12.97 16 17 H 0.07 4.01 7.83 -2.91 -0.02 3.98 16 18 C -0.06 -3.60 5.49 84.86 0.47 -3.13 16 19 N -0.95 -57.52 10.30 21.65 0.22 -57.29 16 20 Si 0.97 46.91 29.55 68.60 2.03 48.93 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 C 0.16 6.73 5.96 86.55 0.52 7.25 16 25 C 0.12 3.15 4.36 86.01 0.37 3.53 16 26 C 0.05 1.29 11.29 83.92 0.95 2.23 16 27 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.11 0.57 8.13 -2.39 -0.02 0.55 16 29 H 0.10 0.75 8.13 -2.39 -0.02 0.73 16 30 H 0.20 2.14 8.06 -2.91 -0.02 2.11 16 31 H 0.16 3.03 6.99 -2.91 -0.02 3.01 16 32 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.08 2.24 7.03 -2.39 -0.02 2.23 16 34 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.04 1.40 6.33 -2.39 -0.02 1.38 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.16 16 37 H 0.04 1.56 7.85 -2.39 -0.02 1.54 16 38 H 0.08 2.38 8.01 -2.38 -0.02 2.36 16 39 H 0.09 2.60 8.01 -2.39 -0.02 2.58 16 40 H 0.00 0.14 7.50 -2.39 -0.02 0.12 16 41 H 0.01 0.55 7.38 -2.38 -0.02 0.53 16 42 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 43 H 0.02 1.01 6.10 -2.39 -0.01 1.00 16 44 H 0.01 0.30 7.87 -2.39 -0.02 0.28 16 45 H 0.11 2.86 3.81 -2.39 -0.01 2.85 16 46 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.17 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -78.51 363.12 4.48 -74.03 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.96 Total: 13.88 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 7.75 Total: 9.47 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -6.18 Total: -122.49 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.07 Total: -23.82 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal Total: -78.51 4.48 -74.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054116372.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.337 kcal (2) G-P(sol) polarization free energy of solvation -78.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds