Wall clock time and date at job start Tue Mar 31 2020 11:10:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.36449 * 124.85190 * 2 1
4 4 C 1.34485 * 108.86108 * 180.02562 * 3 2 1
5 5 C 1.46697 * 106.32655 * 359.97438 * 4 3 2
6 6 C 1.47263 * 126.93833 * 180.02562 * 5 4 3
7 7 O 1.21624 * 120.00100 * 153.43591 * 6 5 4
8 8 N 1.34781 * 120.00057 * 333.42910 * 6 5 4
9 9 C 1.46929 * 120.69741 * 173.68322 * 8 6 5
10 10 C 1.53185 * 108.93163 * 125.83262 * 9 8 6
11 11 C 1.53166 * 109.27216 * 55.21282 * 10 9 8
12 12 C 1.52240 * 109.62035 * 299.83410 * 11 10 9
13 13 C 1.54480 * 110.29634 * 181.99453 * 12 11 10
14 14 C 1.55023 * 101.52773 * 153.34091 * 13 12 11
15 15 N 1.47484 * 104.91017 * 323.65550 * 14 13 12
16 16 C 1.36939 * 125.66620 * 204.05298 * 15 14 13
17 17 H 1.07995 * 119.99790 * 179.97438 * 16 15 14
18 18 C 1.38811 * 119.99829 * 359.95647 * 16 15 14
19 19 N 1.31622 * 119.99906 * 0.02562 * 18 16 15
20 20 Si 1.86797 * 119.99937 * 179.97438 * 18 16 15
21 21 H 1.48502 * 109.47182 * 0.02562 * 20 18 16
22 22 H 1.48501 * 109.47003 * 120.00140 * 20 18 16
23 23 H 1.48500 * 109.47046 * 240.00016 * 20 18 16
24 24 C 1.47183 * 108.67285 * 24.01853 * 15 14 13
25 25 C 1.47075 * 120.69936 * 353.66655 * 8 6 5
26 26 C 1.34659 * 124.84954 * 180.33187 * 2 1 3
27 27 H 1.09005 * 109.46994 * 89.97683 * 1 2 3
28 28 H 1.08996 * 109.47354 * 209.98068 * 1 2 3
29 29 H 1.09004 * 109.47108 * 329.97742 * 1 2 3
30 30 H 1.08004 * 125.56884 * 359.97438 * 3 2 1
31 31 H 1.07989 * 126.83662 * 179.97438 * 4 3 2
32 32 H 1.08995 * 109.56149 * 5.99320 * 9 8 6
33 33 H 1.09002 * 109.55755 * 245.66102 * 9 8 6
34 34 H 1.09008 * 109.50397 * 295.28121 * 10 9 8
35 35 H 1.09003 * 109.54393 * 175.17582 * 10 9 8
36 36 H 1.09006 * 109.44289 * 59.87224 * 11 10 9
37 37 H 1.09000 * 109.44418 * 179.79895 * 11 10 9
38 38 H 1.09003 * 111.00968 * 271.40254 * 13 12 11
39 39 H 1.08996 * 111.01284 * 35.27626 * 13 12 11
40 40 H 1.09005 * 110.34799 * 204.79734 * 14 13 12
41 41 H 1.09006 * 110.44830 * 82.56451 * 14 13 12
42 42 H 0.97000 * 119.99631 * 179.97438 * 19 18 16
43 43 H 1.08999 * 109.91033 * 239.10146 * 24 15 14
44 44 H 1.08997 * 109.91468 * 117.82455 * 24 15 14
45 45 H 1.08998 * 109.58124 * 352.26411 * 25 8 6
46 46 H 1.09001 * 109.58333 * 112.66639 * 25 8 6
47 47 H 1.07994 * 125.80377 * 0.02562 * 26 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.2447 1.1197 0.0000
4 6 3.5375 0.7493 -0.0006
5 6 3.5461 -0.7177 -0.0003
6 6 4.7284 -1.5958 -0.0002
7 8 4.6549 -2.7146 0.4710
8 7 5.8918 -1.1596 -0.5225
9 6 7.1146 -1.9661 -0.4077
10 6 7.7046 -2.1759 -1.8058
11 6 7.9248 -0.8139 -2.4711
12 6 6.5953 -0.0816 -2.5890
13 6 6.7917 1.2738 -3.3035
14 6 5.3911 1.5007 -3.9279
15 7 4.9340 0.1581 -4.3326
16 6 4.0114 -0.1109 -5.3082
17 1 3.7434 -1.1331 -5.5308
18 6 3.4204 0.9304 -6.0106
19 7 3.7472 2.1762 -5.7392
20 14 2.1625 0.5635 -7.3418
21 1 1.9726 -0.9052 -7.4521
22 1 0.8696 1.2044 -6.9912
23 1 2.6448 1.0997 -8.6399
24 6 5.6348 -0.8447 -3.5144
25 6 5.9641 0.1335 -1.2194
26 6 2.2345 -1.1051 -0.0064
27 1 -0.3633 0.0004 -1.0277
28 1 -0.3634 -0.8901 0.5135
29 1 -0.3633 0.8898 0.5142
30 1 1.8828 2.1373 -0.0004
31 1 4.3980 1.4018 -0.0011
32 1 6.8742 -2.9324 0.0357
33 1 7.8381 -1.4449 0.2192
34 1 7.0141 -2.7672 -2.4073
35 1 8.6571 -2.6996 -1.7248
36 1 8.6127 -0.2221 -1.8671
37 1 8.3480 -0.9598 -3.4649
38 1 7.0334 2.0608 -2.5891
39 1 7.5571 1.2011 -4.0762
40 1 5.4649 2.1541 -4.7973
41 1 4.7101 1.9269 -3.1911
42 1 3.3345 2.9038 -6.2304
43 1 6.1980 -1.5208 -4.1577
44 1 4.9152 -1.4074 -2.9198
45 1 4.9600 0.5402 -1.3398
46 1 6.5742 0.8269 -0.6406
47 1 1.8767 -2.1240 -0.0127
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001054116373.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:10:07
Heat of formation + Delta-G solvation = 54.208905 kcal
Electronic energy + Delta-G solvation = -28459.048119 eV
Core-core repulsion = 24836.771825 eV
Total energy + Delta-G solvation = -3622.276294 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.13370 -39.83774 -37.98459 -35.47516 -33.22039 -32.70927 -31.75164 -29.98778
-29.00333 -28.27007 -26.73299 -25.59336 -25.22483 -23.74762 -22.26541 -21.09845
-20.28204 -19.81563 -18.99008 -18.10095 -17.02307 -16.80884 -15.96989 -15.39889
-15.28808 -14.99331 -14.69905 -14.29944 -14.03168 -13.77725 -13.52563 -13.19378
-13.06307 -12.80413 -12.77712 -12.48869 -12.29850 -12.16931 -12.07785 -11.82003
-11.72295 -11.44567 -11.01061 -10.90769 -10.81062 -10.76457 -10.54642 -10.09448
-9.98324 -9.78014 -9.66180 -9.42183 -9.37291 -8.59387 -8.36689 -8.23517
-8.01979 -6.74249 -5.60092 -2.99563 2.10265 2.66150 2.95641 3.39721
3.43052 3.46109 3.48211 3.84377 4.52881 4.71893 4.94174 5.07789
5.09397 5.12161 5.14289 5.20880 5.32662 5.36225 5.43220 5.48265
5.55728 5.66615 5.70602 5.74687 5.81062 5.97663 6.04691 6.11020
6.11405 6.14564 6.21928 6.27737 6.36617 6.45491 6.52561 6.65337
6.76558 6.86843 6.93483 6.97733 7.04633 7.23699 7.40364 7.57603
7.69375 7.82564 7.91733 8.42349 8.63332 9.28769 9.89783 10.56157
11.43832
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.009539 B = 0.006404 C = 0.004454
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2934.460367 B = 4370.959639 C = 6285.359192
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.070 3.930
2 N -0.446 5.446
3 C -0.012 4.012
4 C -0.166 4.166
5 C -0.227 4.227
6 C 0.599 3.401
7 O -0.565 6.565
8 N -0.602 5.602
9 C 0.115 3.885
10 C -0.135 4.135
11 C -0.101 4.101
12 C -0.085 4.085
13 C -0.135 4.135
14 C 0.154 3.846
15 N -0.602 5.602
16 C -0.212 4.212
17 H 0.074 0.926
18 C -0.013 4.013
19 N -0.922 5.922
20 Si 0.909 3.091
21 H -0.281 1.281
22 H -0.293 1.293
23 H -0.291 1.291
24 C 0.154 3.846
25 C 0.112 3.888
26 C 0.070 3.930
27 H 0.076 0.924
28 H 0.082 0.918
29 H 0.083 0.917
30 H 0.165 0.835
31 H 0.149 0.851
32 H 0.087 0.913
33 H 0.061 0.939
34 H 0.069 0.931
35 H 0.068 0.932
36 H 0.059 0.941
37 H 0.065 0.935
38 H 0.058 0.942
39 H 0.062 0.938
40 H 0.103 0.897
41 H 0.011 0.989
42 H 0.249 0.751
43 H 0.019 0.981
44 H 0.020 0.980
45 H 0.115 0.885
46 H 0.058 0.942
47 H 0.169 0.831
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.194 -1.483 12.854 12.994
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 N -0.122 5.122
3 C -0.138 4.138
4 C -0.190 4.190
5 C -0.237 4.237
6 C 0.390 3.610
7 O -0.445 6.445
8 N -0.334 5.334
9 C -0.008 4.008
10 C -0.173 4.173
11 C -0.139 4.139
12 C -0.086 4.086
13 C -0.174 4.174
14 C 0.030 3.970
15 N -0.327 5.327
16 C -0.341 4.341
17 H 0.092 0.908
18 C -0.208 4.208
19 N -0.572 5.572
20 Si 0.740 3.260
21 H -0.207 1.207
22 H -0.220 1.220
23 H -0.218 1.218
24 C 0.028 3.972
25 C -0.010 4.010
26 C -0.065 4.065
27 H 0.095 0.905
28 H 0.101 0.899
29 H 0.102 0.898
30 H 0.182 0.818
31 H 0.166 0.834
32 H 0.106 0.894
33 H 0.080 0.920
34 H 0.088 0.912
35 H 0.087 0.913
36 H 0.077 0.923
37 H 0.083 0.917
38 H 0.077 0.923
39 H 0.081 0.919
40 H 0.121 0.879
41 H 0.029 0.971
42 H 0.060 0.940
43 H 0.037 0.963
44 H 0.038 0.962
45 H 0.133 0.867
46 H 0.076 0.924
47 H 0.186 0.814
Dipole moment (debyes) X Y Z Total
from point charges 0.649 -1.946 12.959 13.121
hybrid contribution -0.686 -0.060 -0.887 1.123
sum -0.037 -2.006 12.072 12.238
Atomic orbital electron populations
1.22085 0.77199 1.04147 1.03713 1.43522 1.06594 1.05915 1.56169
1.21720 0.90582 0.91185 1.10335 1.22104 0.96097 0.93057 1.07726
1.20200 0.92340 0.93488 1.17682 1.17414 0.81907 0.85223 0.76459
1.90702 1.84470 1.20522 1.48850 1.47852 1.08539 1.21239 1.55727
1.21502 0.85701 0.96626 0.96972 1.21948 1.00815 0.98139 0.96405
1.21406 0.96525 0.95311 1.00646 1.21349 0.95097 0.97361 0.94836
1.22994 1.01366 0.94336 0.98701 1.21913 0.87730 0.88519 0.98874
1.44532 1.47148 1.01003 1.40057 1.19102 1.13480 0.92681 1.08847
0.90804 1.24718 1.00574 0.95289 1.00213 1.69814 1.46045 0.97599
1.43714 0.86068 0.80963 0.77275 0.81675 1.20671 1.21980 1.21815
1.21176 0.92630 0.91965 0.91425 1.22169 1.04019 0.83786 0.91021
1.21611 0.89737 0.91557 1.03580 0.90525 0.89902 0.89777 0.81751
0.83400 0.89429 0.92049 0.91245 0.91308 0.92253 0.91667 0.92339
0.91906 0.87893 0.97082 0.94014 0.96279 0.96172 0.86690 0.92365
0.81378
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.62 11.03 59.85 0.66 1.28 16
2 N -0.45 -5.95 3.09 -124.53 -0.38 -6.34 16
3 C -0.01 -0.16 11.34 -16.82 -0.19 -0.35 16
4 C -0.17 -2.57 8.64 -37.49 -0.32 -2.90 16
5 C -0.23 -3.91 5.72 -103.35 -0.59 -4.50 16
6 C 0.60 11.08 7.64 -12.59 -0.10 10.98 16
7 O -0.56 -11.65 16.43 5.26 0.09 -11.57 16
8 N -0.60 -9.94 2.59 -174.50 -0.45 -10.39 16
9 C 0.11 1.63 6.42 -3.71 -0.02 1.60 16
10 C -0.13 -1.84 5.92 -26.55 -0.16 -1.99 16
11 C -0.10 -1.46 4.52 -27.03 -0.12 -1.58 16
12 C -0.09 -1.48 0.54 -154.12 -0.08 -1.56 16
13 C -0.13 -2.48 5.99 -24.89 -0.15 -2.63 16
14 C 0.15 3.66 5.59 -2.43 -0.01 3.65 16
15 N -0.60 -15.44 3.40 -170.23 -0.58 -16.02 16
16 C -0.21 -6.00 10.28 -15.06 -0.15 -6.15 16
17 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16
18 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16
19 N -0.92 -26.62 10.09 55.49 0.56 -26.06 16
20 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16
21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16
23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
24 C 0.15 3.35 5.42 -3.32 -0.02 3.33 16
25 C 0.11 1.82 3.66 -4.07 -0.01 1.81 16
26 C 0.07 1.08 11.21 -16.84 -0.19 0.89 16
27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16
28 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16
29 H 0.08 0.56 8.13 -51.93 -0.42 0.14 16
30 H 0.17 1.82 8.06 -52.48 -0.42 1.40 16
31 H 0.15 2.10 6.45 -52.49 -0.34 1.77 16
32 H 0.09 1.31 7.00 -51.93 -0.36 0.95 16
33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
34 H 0.07 1.08 7.28 -51.92 -0.38 0.71 16
35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
37 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16
38 H 0.06 0.93 7.98 -51.93 -0.41 0.51 16
39 H 0.06 1.15 8.02 -51.93 -0.42 0.74 16
40 H 0.10 2.78 5.88 -51.93 -0.31 2.47 16
41 H 0.01 0.28 7.91 -51.93 -0.41 -0.13 16
42 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16
43 H 0.02 0.43 7.61 -51.93 -0.40 0.03 16
44 H 0.02 0.48 7.55 -51.93 -0.39 0.09 16
45 H 0.12 2.08 3.65 -51.93 -0.19 1.89 16
46 H 0.06 0.83 8.10 -51.93 -0.42 0.40 16
47 H 0.17 2.32 8.06 -52.49 -0.42 1.90 16
LS Contribution 362.51 15.07 5.46 5.46
Total: -1.00 -33.74 362.51 -9.26 -43.00
By element:
Atomic # 1 Polarization: 10.62 SS G_CDS: -7.37 Total: 3.25 kcal
Atomic # 6 Polarization: 2.98 SS G_CDS: -1.56 Total: 1.42 kcal
Atomic # 7 Polarization: -57.95 SS G_CDS: -0.86 Total: -58.81 kcal
Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal
Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal
Total LS contribution 5.46 Total: 5.46 kcal
Total: -33.74 -9.26 -43.00 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054116373.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 97.212 kcal
(2) G-P(sol) polarization free energy of solvation -33.738 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.473 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.209 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds