Wall clock time and date at job start Tue Mar 31 2020 11:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36449 * 124.85190 * 2 1 4 4 C 1.34485 * 108.86108 * 180.02562 * 3 2 1 5 5 C 1.46697 * 106.32655 * 359.97438 * 4 3 2 6 6 C 1.47263 * 126.93833 * 180.02562 * 5 4 3 7 7 O 1.21624 * 120.00100 * 153.43591 * 6 5 4 8 8 N 1.34781 * 120.00057 * 333.42910 * 6 5 4 9 9 C 1.46929 * 120.69741 * 173.68322 * 8 6 5 10 10 C 1.53185 * 108.93163 * 125.83262 * 9 8 6 11 11 C 1.53166 * 109.27216 * 55.21282 * 10 9 8 12 12 C 1.52240 * 109.62035 * 299.83410 * 11 10 9 13 13 C 1.54480 * 110.29634 * 181.99453 * 12 11 10 14 14 C 1.55023 * 101.52773 * 153.34091 * 13 12 11 15 15 N 1.47484 * 104.91017 * 323.65550 * 14 13 12 16 16 C 1.36939 * 125.66620 * 204.05298 * 15 14 13 17 17 H 1.07995 * 119.99790 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99829 * 359.95647 * 16 15 14 19 19 N 1.31622 * 119.99906 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99937 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47182 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47003 * 120.00140 * 20 18 16 23 23 H 1.48500 * 109.47046 * 240.00016 * 20 18 16 24 24 C 1.47183 * 108.67285 * 24.01853 * 15 14 13 25 25 C 1.47075 * 120.69936 * 353.66655 * 8 6 5 26 26 C 1.34659 * 124.84954 * 180.33187 * 2 1 3 27 27 H 1.09005 * 109.46994 * 89.97683 * 1 2 3 28 28 H 1.08996 * 109.47354 * 209.98068 * 1 2 3 29 29 H 1.09004 * 109.47108 * 329.97742 * 1 2 3 30 30 H 1.08004 * 125.56884 * 359.97438 * 3 2 1 31 31 H 1.07989 * 126.83662 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.56149 * 5.99320 * 9 8 6 33 33 H 1.09002 * 109.55755 * 245.66102 * 9 8 6 34 34 H 1.09008 * 109.50397 * 295.28121 * 10 9 8 35 35 H 1.09003 * 109.54393 * 175.17582 * 10 9 8 36 36 H 1.09006 * 109.44289 * 59.87224 * 11 10 9 37 37 H 1.09000 * 109.44418 * 179.79895 * 11 10 9 38 38 H 1.09003 * 111.00968 * 271.40254 * 13 12 11 39 39 H 1.08996 * 111.01284 * 35.27626 * 13 12 11 40 40 H 1.09005 * 110.34799 * 204.79734 * 14 13 12 41 41 H 1.09006 * 110.44830 * 82.56451 * 14 13 12 42 42 H 0.97000 * 119.99631 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.91033 * 239.10146 * 24 15 14 44 44 H 1.08997 * 109.91468 * 117.82455 * 24 15 14 45 45 H 1.08998 * 109.58124 * 352.26411 * 25 8 6 46 46 H 1.09001 * 109.58333 * 112.66639 * 25 8 6 47 47 H 1.07994 * 125.80377 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7493 -0.0006 5 6 3.5461 -0.7177 -0.0003 6 6 4.7284 -1.5958 -0.0002 7 8 4.6549 -2.7146 0.4710 8 7 5.8918 -1.1596 -0.5225 9 6 7.1146 -1.9661 -0.4077 10 6 7.7046 -2.1759 -1.8058 11 6 7.9248 -0.8139 -2.4711 12 6 6.5953 -0.0816 -2.5890 13 6 6.7917 1.2738 -3.3035 14 6 5.3911 1.5007 -3.9279 15 7 4.9340 0.1581 -4.3326 16 6 4.0114 -0.1109 -5.3082 17 1 3.7434 -1.1331 -5.5308 18 6 3.4204 0.9304 -6.0106 19 7 3.7472 2.1762 -5.7392 20 14 2.1625 0.5635 -7.3418 21 1 1.9726 -0.9052 -7.4521 22 1 0.8696 1.2044 -6.9912 23 1 2.6448 1.0997 -8.6399 24 6 5.6348 -0.8447 -3.5144 25 6 5.9641 0.1335 -1.2194 26 6 2.2345 -1.1051 -0.0064 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3634 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 1.8828 2.1373 -0.0004 31 1 4.3980 1.4018 -0.0011 32 1 6.8742 -2.9324 0.0357 33 1 7.8381 -1.4449 0.2192 34 1 7.0141 -2.7672 -2.4073 35 1 8.6571 -2.6996 -1.7248 36 1 8.6127 -0.2221 -1.8671 37 1 8.3480 -0.9598 -3.4649 38 1 7.0334 2.0608 -2.5891 39 1 7.5571 1.2011 -4.0762 40 1 5.4649 2.1541 -4.7973 41 1 4.7101 1.9269 -3.1911 42 1 3.3345 2.9038 -6.2304 43 1 6.1980 -1.5208 -4.1577 44 1 4.9152 -1.4074 -2.9198 45 1 4.9600 0.5402 -1.3398 46 1 6.5742 0.8269 -0.6406 47 1 1.8767 -2.1240 -0.0127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054116373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:07 Heat of formation + Delta-G solvation = 54.208905 kcal Electronic energy + Delta-G solvation = -28459.048119 eV Core-core repulsion = 24836.771825 eV Total energy + Delta-G solvation = -3622.276294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.13370 -39.83774 -37.98459 -35.47516 -33.22039 -32.70927 -31.75164 -29.98778 -29.00333 -28.27007 -26.73299 -25.59336 -25.22483 -23.74762 -22.26541 -21.09845 -20.28204 -19.81563 -18.99008 -18.10095 -17.02307 -16.80884 -15.96989 -15.39889 -15.28808 -14.99331 -14.69905 -14.29944 -14.03168 -13.77725 -13.52563 -13.19378 -13.06307 -12.80413 -12.77712 -12.48869 -12.29850 -12.16931 -12.07785 -11.82003 -11.72295 -11.44567 -11.01061 -10.90769 -10.81062 -10.76457 -10.54642 -10.09448 -9.98324 -9.78014 -9.66180 -9.42183 -9.37291 -8.59387 -8.36689 -8.23517 -8.01979 -6.74249 -5.60092 -2.99563 2.10265 2.66150 2.95641 3.39721 3.43052 3.46109 3.48211 3.84377 4.52881 4.71893 4.94174 5.07789 5.09397 5.12161 5.14289 5.20880 5.32662 5.36225 5.43220 5.48265 5.55728 5.66615 5.70602 5.74687 5.81062 5.97663 6.04691 6.11020 6.11405 6.14564 6.21928 6.27737 6.36617 6.45491 6.52561 6.65337 6.76558 6.86843 6.93483 6.97733 7.04633 7.23699 7.40364 7.57603 7.69375 7.82564 7.91733 8.42349 8.63332 9.28769 9.89783 10.56157 11.43832 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009539 B = 0.006404 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.460367 B = 4370.959639 C = 6285.359192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.446 5.446 3 C -0.012 4.012 4 C -0.166 4.166 5 C -0.227 4.227 6 C 0.599 3.401 7 O -0.565 6.565 8 N -0.602 5.602 9 C 0.115 3.885 10 C -0.135 4.135 11 C -0.101 4.101 12 C -0.085 4.085 13 C -0.135 4.135 14 C 0.154 3.846 15 N -0.602 5.602 16 C -0.212 4.212 17 H 0.074 0.926 18 C -0.013 4.013 19 N -0.922 5.922 20 Si 0.909 3.091 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.291 1.291 24 C 0.154 3.846 25 C 0.112 3.888 26 C 0.070 3.930 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.165 0.835 31 H 0.149 0.851 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.103 0.897 41 H 0.011 0.989 42 H 0.249 0.751 43 H 0.019 0.981 44 H 0.020 0.980 45 H 0.115 0.885 46 H 0.058 0.942 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.194 -1.483 12.854 12.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.122 5.122 3 C -0.138 4.138 4 C -0.190 4.190 5 C -0.237 4.237 6 C 0.390 3.610 7 O -0.445 6.445 8 N -0.334 5.334 9 C -0.008 4.008 10 C -0.173 4.173 11 C -0.139 4.139 12 C -0.086 4.086 13 C -0.174 4.174 14 C 0.030 3.970 15 N -0.327 5.327 16 C -0.341 4.341 17 H 0.092 0.908 18 C -0.208 4.208 19 N -0.572 5.572 20 Si 0.740 3.260 21 H -0.207 1.207 22 H -0.220 1.220 23 H -0.218 1.218 24 C 0.028 3.972 25 C -0.010 4.010 26 C -0.065 4.065 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.182 0.818 31 H 0.166 0.834 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.029 0.971 42 H 0.060 0.940 43 H 0.037 0.963 44 H 0.038 0.962 45 H 0.133 0.867 46 H 0.076 0.924 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.649 -1.946 12.959 13.121 hybrid contribution -0.686 -0.060 -0.887 1.123 sum -0.037 -2.006 12.072 12.238 Atomic orbital electron populations 1.22085 0.77199 1.04147 1.03713 1.43522 1.06594 1.05915 1.56169 1.21720 0.90582 0.91185 1.10335 1.22104 0.96097 0.93057 1.07726 1.20200 0.92340 0.93488 1.17682 1.17414 0.81907 0.85223 0.76459 1.90702 1.84470 1.20522 1.48850 1.47852 1.08539 1.21239 1.55727 1.21502 0.85701 0.96626 0.96972 1.21948 1.00815 0.98139 0.96405 1.21406 0.96525 0.95311 1.00646 1.21349 0.95097 0.97361 0.94836 1.22994 1.01366 0.94336 0.98701 1.21913 0.87730 0.88519 0.98874 1.44532 1.47148 1.01003 1.40057 1.19102 1.13480 0.92681 1.08847 0.90804 1.24718 1.00574 0.95289 1.00213 1.69814 1.46045 0.97599 1.43714 0.86068 0.80963 0.77275 0.81675 1.20671 1.21980 1.21815 1.21176 0.92630 0.91965 0.91425 1.22169 1.04019 0.83786 0.91021 1.21611 0.89737 0.91557 1.03580 0.90525 0.89902 0.89777 0.81751 0.83400 0.89429 0.92049 0.91245 0.91308 0.92253 0.91667 0.92339 0.91906 0.87893 0.97082 0.94014 0.96279 0.96172 0.86690 0.92365 0.81378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 11.03 59.85 0.66 1.28 16 2 N -0.45 -5.95 3.09 -124.53 -0.38 -6.34 16 3 C -0.01 -0.16 11.34 -16.82 -0.19 -0.35 16 4 C -0.17 -2.57 8.64 -37.49 -0.32 -2.90 16 5 C -0.23 -3.91 5.72 -103.35 -0.59 -4.50 16 6 C 0.60 11.08 7.64 -12.59 -0.10 10.98 16 7 O -0.56 -11.65 16.43 5.26 0.09 -11.57 16 8 N -0.60 -9.94 2.59 -174.50 -0.45 -10.39 16 9 C 0.11 1.63 6.42 -3.71 -0.02 1.60 16 10 C -0.13 -1.84 5.92 -26.55 -0.16 -1.99 16 11 C -0.10 -1.46 4.52 -27.03 -0.12 -1.58 16 12 C -0.09 -1.48 0.54 -154.12 -0.08 -1.56 16 13 C -0.13 -2.48 5.99 -24.89 -0.15 -2.63 16 14 C 0.15 3.66 5.59 -2.43 -0.01 3.65 16 15 N -0.60 -15.44 3.40 -170.23 -0.58 -16.02 16 16 C -0.21 -6.00 10.28 -15.06 -0.15 -6.15 16 17 H 0.07 2.07 7.83 -52.49 -0.41 1.66 16 18 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 19 N -0.92 -26.62 10.09 55.49 0.56 -26.06 16 20 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 C 0.15 3.35 5.42 -3.32 -0.02 3.33 16 25 C 0.11 1.82 3.66 -4.07 -0.01 1.81 16 26 C 0.07 1.08 11.21 -16.84 -0.19 0.89 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.08 0.56 8.13 -51.93 -0.42 0.14 16 30 H 0.17 1.82 8.06 -52.48 -0.42 1.40 16 31 H 0.15 2.10 6.45 -52.49 -0.34 1.77 16 32 H 0.09 1.31 7.00 -51.93 -0.36 0.95 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.08 7.28 -51.92 -0.38 0.71 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 38 H 0.06 0.93 7.98 -51.93 -0.41 0.51 16 39 H 0.06 1.15 8.02 -51.93 -0.42 0.74 16 40 H 0.10 2.78 5.88 -51.93 -0.31 2.47 16 41 H 0.01 0.28 7.91 -51.93 -0.41 -0.13 16 42 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.02 0.43 7.61 -51.93 -0.40 0.03 16 44 H 0.02 0.48 7.55 -51.93 -0.39 0.09 16 45 H 0.12 2.08 3.65 -51.93 -0.19 1.89 16 46 H 0.06 0.83 8.10 -51.93 -0.42 0.40 16 47 H 0.17 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 362.51 15.07 5.46 5.46 Total: -1.00 -33.74 362.51 -9.26 -43.00 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.37 Total: 3.25 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.56 Total: 1.42 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -0.86 Total: -58.81 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.57 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.74 -9.26 -43.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054116373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.212 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds