Wall clock time and date at job start Tue Mar 31 2020 11:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36449 * 124.85190 * 2 1 4 4 C 1.34485 * 108.86108 * 180.02562 * 3 2 1 5 5 C 1.46697 * 106.32655 * 359.97438 * 4 3 2 6 6 C 1.47263 * 126.93833 * 180.02562 * 5 4 3 7 7 O 1.21624 * 120.00100 * 153.43591 * 6 5 4 8 8 N 1.34781 * 120.00057 * 333.42910 * 6 5 4 9 9 C 1.46929 * 120.69741 * 173.68322 * 8 6 5 10 10 C 1.53185 * 108.93163 * 125.83262 * 9 8 6 11 11 C 1.53166 * 109.27216 * 55.21282 * 10 9 8 12 12 C 1.52240 * 109.62035 * 299.83410 * 11 10 9 13 13 C 1.54480 * 110.29634 * 181.99453 * 12 11 10 14 14 C 1.55023 * 101.52773 * 153.34091 * 13 12 11 15 15 N 1.47484 * 104.91017 * 323.65550 * 14 13 12 16 16 C 1.36939 * 125.66620 * 204.05298 * 15 14 13 17 17 H 1.07995 * 119.99790 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99829 * 359.95647 * 16 15 14 19 19 N 1.31622 * 119.99906 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99937 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47182 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47003 * 120.00140 * 20 18 16 23 23 H 1.48500 * 109.47046 * 240.00016 * 20 18 16 24 24 C 1.47183 * 108.67285 * 24.01853 * 15 14 13 25 25 C 1.47075 * 120.69936 * 353.66655 * 8 6 5 26 26 C 1.34659 * 124.84954 * 180.33187 * 2 1 3 27 27 H 1.09005 * 109.46994 * 89.97683 * 1 2 3 28 28 H 1.08996 * 109.47354 * 209.98068 * 1 2 3 29 29 H 1.09004 * 109.47108 * 329.97742 * 1 2 3 30 30 H 1.08004 * 125.56884 * 359.97438 * 3 2 1 31 31 H 1.07989 * 126.83662 * 179.97438 * 4 3 2 32 32 H 1.08995 * 109.56149 * 5.99320 * 9 8 6 33 33 H 1.09002 * 109.55755 * 245.66102 * 9 8 6 34 34 H 1.09008 * 109.50397 * 295.28121 * 10 9 8 35 35 H 1.09003 * 109.54393 * 175.17582 * 10 9 8 36 36 H 1.09006 * 109.44289 * 59.87224 * 11 10 9 37 37 H 1.09000 * 109.44418 * 179.79895 * 11 10 9 38 38 H 1.09003 * 111.00968 * 271.40254 * 13 12 11 39 39 H 1.08996 * 111.01284 * 35.27626 * 13 12 11 40 40 H 1.09005 * 110.34799 * 204.79734 * 14 13 12 41 41 H 1.09006 * 110.44830 * 82.56451 * 14 13 12 42 42 H 0.97000 * 119.99631 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.91033 * 239.10146 * 24 15 14 44 44 H 1.08997 * 109.91468 * 117.82455 * 24 15 14 45 45 H 1.08998 * 109.58124 * 352.26411 * 25 8 6 46 46 H 1.09001 * 109.58333 * 112.66639 * 25 8 6 47 47 H 1.07994 * 125.80377 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7493 -0.0006 5 6 3.5461 -0.7177 -0.0003 6 6 4.7284 -1.5958 -0.0002 7 8 4.6549 -2.7146 0.4710 8 7 5.8918 -1.1596 -0.5225 9 6 7.1146 -1.9661 -0.4077 10 6 7.7046 -2.1759 -1.8058 11 6 7.9248 -0.8139 -2.4711 12 6 6.5953 -0.0816 -2.5890 13 6 6.7917 1.2738 -3.3035 14 6 5.3911 1.5007 -3.9279 15 7 4.9340 0.1581 -4.3326 16 6 4.0114 -0.1109 -5.3082 17 1 3.7434 -1.1331 -5.5308 18 6 3.4204 0.9304 -6.0106 19 7 3.7472 2.1762 -5.7392 20 14 2.1625 0.5635 -7.3418 21 1 1.9726 -0.9052 -7.4521 22 1 0.8696 1.2044 -6.9912 23 1 2.6448 1.0997 -8.6399 24 6 5.6348 -0.8447 -3.5144 25 6 5.9641 0.1335 -1.2194 26 6 2.2345 -1.1051 -0.0064 27 1 -0.3633 0.0004 -1.0277 28 1 -0.3634 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 1.8828 2.1373 -0.0004 31 1 4.3980 1.4018 -0.0011 32 1 6.8742 -2.9324 0.0357 33 1 7.8381 -1.4449 0.2192 34 1 7.0141 -2.7672 -2.4073 35 1 8.6571 -2.6996 -1.7248 36 1 8.6127 -0.2221 -1.8671 37 1 8.3480 -0.9598 -3.4649 38 1 7.0334 2.0608 -2.5891 39 1 7.5571 1.2011 -4.0762 40 1 5.4649 2.1541 -4.7973 41 1 4.7101 1.9269 -3.1911 42 1 3.3345 2.9038 -6.2304 43 1 6.1980 -1.5208 -4.1577 44 1 4.9152 -1.4074 -2.9198 45 1 4.9600 0.5402 -1.3398 46 1 6.5742 0.8269 -0.6406 47 1 1.8767 -2.1240 -0.0127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054116373.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:06 Heat of formation + Delta-G solvation = 34.655186 kcal Electronic energy + Delta-G solvation = -28459.896032 eV Core-core repulsion = 24836.771825 eV Total energy + Delta-G solvation = -3623.124207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.28669 -41.15502 -39.48064 -37.07144 -34.66193 -34.19580 -32.97688 -31.77969 -30.16513 -29.87782 -27.77105 -27.42099 -26.46756 -25.34866 -23.54527 -22.48240 -21.83679 -21.08463 -20.31820 -19.39762 -18.82618 -18.21218 -17.29190 -16.86227 -16.59967 -16.42431 -16.12118 -15.78499 -15.57830 -15.01527 -14.83807 -14.59668 -14.32998 -14.19570 -13.90887 -13.86720 -13.76160 -13.37037 -13.23729 -13.12536 -13.07530 -12.96619 -12.84210 -12.72807 -12.37799 -12.09466 -11.96943 -11.89343 -11.72292 -11.49929 -11.24557 -10.98878 -10.79289 -10.69620 -9.63710 -9.36778 -9.19962 -8.82122 -7.74615 -5.16841 0.84889 1.42864 1.43930 1.53453 1.53887 1.91778 2.23379 2.49042 2.55502 3.32996 3.65274 3.74443 3.84430 3.92392 4.00182 4.04606 4.07398 4.15874 4.23288 4.32298 4.40442 4.43179 4.52949 4.60152 4.66074 4.70063 4.75498 4.84160 4.87396 4.88050 4.97155 4.99420 5.04769 5.07900 5.17369 5.21189 5.27165 5.44280 5.47521 5.52266 5.69042 5.75477 5.80427 5.89314 6.10464 6.36451 6.37259 6.51205 7.15943 7.28020 7.82949 8.47554 9.26382 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009539 B = 0.006404 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2934.460367 B = 4370.959639 C = 6285.359192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.443 5.443 3 C -0.013 4.013 4 C -0.182 4.182 5 C -0.262 4.262 6 C 0.589 3.411 7 O -0.599 6.599 8 N -0.600 5.600 9 C 0.111 3.889 10 C -0.128 4.128 11 C -0.096 4.096 12 C -0.074 4.074 13 C -0.118 4.118 14 C 0.159 3.841 15 N -0.620 5.620 16 C -0.235 4.235 17 H 0.064 0.936 18 C -0.059 4.059 19 N -0.940 5.940 20 Si 0.971 3.029 21 H -0.276 1.276 22 H -0.290 1.290 23 H -0.288 1.288 24 C 0.158 3.842 25 C 0.116 3.884 26 C 0.058 3.942 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.194 0.806 31 H 0.157 0.843 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.039 0.961 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.069 0.931 41 H -0.008 1.008 42 H 0.247 0.753 43 H 0.010 0.990 44 H -0.004 1.004 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.059 -0.640 13.701 13.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.118 5.118 3 C -0.140 4.140 4 C -0.206 4.206 5 C -0.272 4.272 6 C 0.381 3.619 7 O -0.483 6.483 8 N -0.331 5.331 9 C -0.011 4.011 10 C -0.166 4.166 11 C -0.134 4.134 12 C -0.075 4.075 13 C -0.157 4.157 14 C 0.034 3.966 15 N -0.346 5.346 16 C -0.365 4.365 17 H 0.082 0.918 18 C -0.252 4.252 19 N -0.590 5.590 20 Si 0.800 3.200 21 H -0.201 1.201 22 H -0.217 1.217 23 H -0.215 1.215 24 C 0.033 3.967 25 C -0.006 4.006 26 C -0.079 4.079 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.211 0.789 31 H 0.174 0.826 32 H 0.093 0.907 33 H 0.112 0.888 34 H 0.058 0.942 35 H 0.121 0.879 36 H 0.112 0.888 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.010 0.990 42 H 0.057 0.943 43 H 0.028 0.972 44 H 0.014 0.986 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.528 -1.094 13.807 13.934 hybrid contribution -1.024 -0.331 -1.176 1.594 sum 0.504 -1.425 12.631 12.721 Atomic orbital electron populations 1.22412 0.74524 1.06556 1.04268 1.43833 1.08256 1.05091 1.54595 1.22233 0.90392 0.92477 1.08939 1.22285 0.97320 0.92356 1.08623 1.20408 0.92694 0.94489 1.19588 1.17735 0.82823 0.85025 0.76303 1.90660 1.85094 1.21868 1.50679 1.47934 1.08779 1.21485 1.54870 1.21709 0.85331 0.96287 0.97786 1.21910 1.01676 0.97720 0.95315 1.21397 0.94908 0.95626 1.01421 1.21296 0.95698 0.96347 0.94180 1.22858 0.97695 0.95879 0.99286 1.21715 0.90581 0.87060 0.97250 1.44803 1.47047 1.02708 1.40028 1.19328 1.14648 0.92500 1.10011 0.91759 1.25454 1.02371 0.95217 1.02179 1.70048 1.46608 0.98053 1.44319 0.85123 0.78615 0.77289 0.79003 1.20083 1.21656 1.21500 1.21217 0.92618 0.91571 0.91337 1.22142 1.03547 0.84172 0.90763 1.21836 0.89901 0.92605 1.03559 0.90779 0.87951 0.87113 0.78926 0.82598 0.90690 0.88842 0.94217 0.87929 0.88834 0.91831 0.88786 0.91538 0.91312 0.98965 0.94347 0.97184 0.98650 0.88687 0.88963 0.80717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.00 11.03 127.77 1.41 2.41 16 2 N -0.44 -11.54 3.09 -547.89 -1.69 -13.23 16 3 C -0.01 -0.36 11.34 83.12 0.94 0.59 16 4 C -0.18 -5.63 8.64 23.62 0.20 -5.42 16 5 C -0.26 -9.22 5.72 -19.04 -0.11 -9.33 16 6 C 0.59 22.27 7.64 86.62 0.66 22.93 16 7 O -0.60 -25.58 16.43 -4.11 -0.07 -25.65 16 8 N -0.60 -19.38 2.59 -824.24 -2.14 -21.51 16 9 C 0.11 2.93 6.42 86.36 0.55 3.48 16 10 C -0.13 -3.20 5.92 30.71 0.18 -3.02 16 11 C -0.10 -2.46 4.52 30.40 0.14 -2.32 16 12 C -0.07 -2.45 0.54 -51.93 -0.03 -2.47 16 13 C -0.12 -4.11 5.99 31.79 0.19 -3.92 16 14 C 0.16 7.60 5.59 86.88 0.49 8.09 16 15 N -0.62 -32.65 3.40 -692.49 -2.36 -35.00 16 16 C -0.24 -13.69 10.28 84.03 0.86 -12.82 16 17 H 0.06 3.74 7.83 -2.91 -0.02 3.72 16 18 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 19 N -0.94 -55.28 10.09 21.65 0.22 -55.06 16 20 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 24 C 0.16 7.01 5.42 86.47 0.47 7.48 16 25 C 0.12 3.57 3.66 86.05 0.32 3.89 16 26 C 0.06 1.82 11.21 83.92 0.94 2.76 16 27 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.10 1.24 8.13 -2.39 -0.02 1.22 16 29 H 0.11 1.20 8.13 -2.38 -0.02 1.18 16 30 H 0.19 3.89 8.06 -2.91 -0.02 3.86 16 31 H 0.16 4.33 6.45 -2.92 -0.02 4.32 16 32 H 0.07 2.20 7.00 -2.39 -0.02 2.19 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.04 1.22 7.28 -2.38 -0.02 1.21 16 35 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.06 1.69 8.11 -2.39 -0.02 1.67 16 38 H 0.09 2.63 7.98 -2.39 -0.02 2.61 16 39 H 0.07 2.29 8.02 -2.39 -0.02 2.27 16 40 H 0.07 3.79 5.88 -2.38 -0.01 3.78 16 41 H -0.01 -0.39 7.91 -2.38 -0.02 -0.41 16 42 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.01 0.46 7.61 -2.39 -0.02 0.45 16 44 H 0.00 -0.22 7.55 -2.39 -0.02 -0.24 16 45 H 0.10 3.41 3.65 -2.39 -0.01 3.41 16 46 H 0.09 2.26 8.10 -2.39 -0.02 2.24 16 47 H 0.18 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -76.63 362.51 4.64 -72.00 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.96 Total: 20.74 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 7.69 Total: 9.38 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -5.96 Total: -124.81 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.07 Total: -25.65 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -76.63 4.64 -72.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054116373.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.651 kcal (2) G-P(sol) polarization free energy of solvation -76.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds