Wall clock time and date at job start Tue Mar 31 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 120.00042 * 2 1 4 4 C 1.53003 * 109.47334 * 276.84531 * 3 2 1 5 5 H 1.09003 * 112.95910 * 51.01741 * 4 3 2 6 6 C 1.53938 * 113.77168 * 182.69065 * 4 3 2 7 7 C 1.53941 * 86.28980 * 137.91015 * 6 4 3 8 8 N 1.47574 * 113.77088 * 279.19267 * 4 3 2 9 9 C 1.36942 * 134.49355 * 41.05126 * 8 4 3 10 10 H 1.07997 * 119.99888 * 17.12275 * 9 8 4 11 11 C 1.38810 * 119.99716 * 197.11452 * 9 8 4 12 12 N 1.31618 * 120.00298 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99836 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.46957 * 90.00253 * 13 11 9 15 15 H 1.48502 * 109.47527 * 210.00411 * 13 11 9 16 16 H 1.48505 * 109.47166 * 330.00477 * 13 11 9 17 17 C 1.34774 * 119.99869 * 180.02562 * 2 1 3 18 18 O 1.21627 * 119.99954 * 180.60768 * 17 2 1 19 19 C 1.47264 * 120.00334 * 0.60726 * 17 2 1 20 20 C 1.46751 * 126.96438 * 350.80590 * 19 17 2 21 21 C 1.34501 * 106.36519 * 179.97438 * 20 19 17 22 22 N 1.36431 * 109.00881 * 0.02562 * 21 20 19 23 23 C 1.35214 * 109.89796 * 359.76778 * 22 21 20 24 24 C 1.51002 * 124.54052 * 179.62649 * 23 22 21 25 25 C 1.53390 * 108.30691 * 344.79632 * 24 23 22 26 26 C 1.53163 * 109.04258 * 48.27363 * 25 24 23 27 27 C 1.47018 * 126.00832 * 180.02562 * 22 21 20 28 28 H 1.09004 * 109.47273 * 263.39617 * 1 2 3 29 29 H 1.09007 * 109.47143 * 23.39556 * 1 2 3 30 30 H 1.08996 * 109.47227 * 143.39662 * 1 2 3 31 31 H 1.09000 * 109.46957 * 36.84937 * 3 2 1 32 32 H 1.08995 * 109.46895 * 156.84611 * 3 2 1 33 33 H 1.08998 * 113.74798 * 252.25555 * 6 4 3 34 34 H 1.09004 * 113.73736 * 23.46255 * 6 4 3 35 35 H 1.09006 * 113.77001 * 90.69568 * 7 6 4 36 36 H 1.08997 * 113.77328 * 221.98535 * 7 6 4 37 37 H 0.97006 * 120.00110 * 179.97438 * 12 11 9 38 38 H 1.07998 * 126.82273 * 359.94221 * 20 19 17 39 39 H 1.07995 * 125.49725 * 180.02562 * 21 20 19 40 40 H 1.08996 * 109.85046 * 224.98815 * 24 23 22 41 41 H 1.08992 * 109.53894 * 104.42241 * 24 23 22 42 42 H 1.09003 * 109.54543 * 288.40510 * 25 24 23 43 43 H 1.08993 * 109.54442 * 168.14144 * 25 24 23 44 44 H 1.08991 * 109.46437 * 170.40958 * 26 25 24 45 45 H 1.09000 * 109.44867 * 50.43422 * 26 25 24 46 46 H 1.09001 * 109.55862 * 282.24389 * 27 22 21 47 47 H 1.09005 * 109.56271 * 42.57940 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3036 1.7964 -1.4322 5 1 1.3429 1.8274 -1.9462 6 6 3.1153 3.0986 -1.5552 7 6 3.7444 2.4701 -2.8118 8 7 3.3821 1.1678 -2.2194 9 6 3.8563 -0.1104 -2.3482 10 1 3.2549 -0.9451 -2.0197 11 6 5.1099 -0.3331 -2.9013 12 7 5.8429 0.6842 -3.3013 13 14 5.7565 -2.0767 -3.0777 14 1 5.3512 -2.6237 -4.3974 15 1 7.2382 -2.0676 -2.9796 16 1 5.1940 -2.9251 -1.9964 17 6 2.1388 -1.1672 -0.0005 18 8 3.3551 -1.1672 0.0106 19 6 1.4026 -2.4425 -0.0146 20 6 -0.0427 -2.6291 0.1584 21 6 -0.2669 -3.9525 0.0726 22 7 0.9199 -4.5916 -0.1379 23 6 1.9248 -3.6887 -0.1957 24 6 3.3783 -4.0380 -0.4092 25 6 3.5536 -5.5419 -0.1633 26 6 2.4703 -6.3036 -0.9327 27 6 1.1056 -6.0421 -0.2889 28 1 -0.3634 -0.1182 1.0209 29 1 -0.3634 0.9432 -0.4081 30 1 -0.3633 -0.8250 -0.6127 31 1 1.6670 1.9945 0.6163 32 1 3.1974 1.1109 0.4041 33 1 2.5056 3.9780 -1.7627 34 1 3.8217 3.2540 -0.7397 35 1 3.2079 2.6983 -3.7328 36 1 4.8189 2.6336 -2.8939 37 1 6.7191 0.5286 -3.6874 38 1 -0.7799 -1.8571 0.3226 39 1 -1.2310 -4.4319 0.1567 40 1 4.0001 -3.4766 0.2882 41 1 3.6646 -3.7970 -1.4328 42 1 3.4590 -5.7506 0.9023 43 1 4.5374 -5.8561 -0.5118 44 1 2.6869 -7.3714 -0.9036 45 1 2.4542 -5.9644 -1.9685 46 1 1.0667 -6.5189 0.6906 47 1 0.3184 -6.4466 -0.9251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085646007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:15 Heat of formation + Delta-G solvation = 96.614493 kcal Electronic energy + Delta-G solvation = -28468.518901 eV Core-core repulsion = 24848.081451 eV Total energy + Delta-G solvation = -3620.437450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.40061 -38.91611 -37.28929 -35.90247 -34.62354 -32.40653 -31.82451 -29.71198 -28.41813 -27.58091 -27.24255 -25.92391 -24.14105 -23.04310 -22.87599 -21.34552 -20.84838 -19.33798 -18.80862 -17.87881 -16.84235 -16.58043 -15.70348 -15.39299 -15.17898 -14.74283 -14.44594 -14.31454 -14.13967 -13.84382 -13.61137 -13.32470 -13.32041 -13.07667 -12.64226 -12.51014 -12.22362 -12.09486 -11.57337 -11.32854 -11.23902 -11.07235 -10.98070 -10.92247 -10.81806 -10.72483 -10.58475 -10.43439 -10.09459 -9.70134 -9.43351 -9.19877 -8.86069 -8.39300 -8.25766 -7.89534 -7.68340 -6.44552 -5.41318 -2.75301 2.24416 2.67794 2.91607 3.57141 3.61631 3.67176 3.81210 4.30609 4.42117 4.57344 4.71867 4.74262 4.91847 5.03211 5.15778 5.27317 5.31892 5.43838 5.53070 5.58160 5.61277 5.69089 5.72152 5.78647 5.81516 5.87487 5.90483 6.00871 6.07094 6.15383 6.18734 6.21181 6.28571 6.35355 6.52051 6.56495 6.59223 6.89146 6.96034 7.05851 7.26966 7.38563 7.45614 7.51172 7.76532 7.95557 8.26481 8.38150 9.22045 9.41600 10.08050 10.94866 11.74425 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012774 B = 0.006190 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.436673 B = 4522.495791 C = 6324.829391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.610 5.610 3 C 0.120 3.880 4 C 0.124 3.876 5 H 0.039 0.961 6 C -0.155 4.155 7 C 0.138 3.862 8 N -0.593 5.593 9 C -0.176 4.176 10 H 0.084 0.916 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.893 3.107 14 H -0.300 1.300 15 H -0.297 1.297 16 H -0.261 1.261 17 C 0.575 3.425 18 O -0.499 6.499 19 C -0.219 4.219 20 C -0.188 4.188 21 C -0.026 4.026 22 N -0.449 5.449 23 C 0.108 3.892 24 C -0.063 4.063 25 C -0.126 4.126 26 C -0.137 4.137 27 C 0.106 3.894 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.015 0.985 36 H 0.085 0.915 37 H 0.245 0.755 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.726 -9.891 8.373 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C -0.003 4.003 4 C 0.015 3.985 5 H 0.057 0.943 6 C -0.194 4.194 7 C 0.013 3.987 8 N -0.319 5.319 9 C -0.304 4.304 10 H 0.102 0.898 11 C -0.208 4.208 12 N -0.579 5.579 13 Si 0.726 3.274 14 H -0.229 1.229 15 H -0.224 1.224 16 H -0.186 1.186 17 C 0.364 3.636 18 O -0.373 6.373 19 C -0.229 4.229 20 C -0.212 4.212 21 C -0.152 4.152 22 N -0.128 5.128 23 C -0.007 4.007 24 C -0.101 4.101 25 C -0.164 4.164 26 C -0.175 4.175 27 C -0.015 4.015 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.077 0.923 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.033 0.967 36 H 0.103 0.897 37 H 0.055 0.945 38 H 0.177 0.823 39 H 0.177 0.823 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.816 -10.522 8.284 18.536 hybrid contribution -0.018 -0.914 -0.374 0.987 sum -12.834 -11.436 7.910 18.922 Atomic orbital electron populations 1.22280 0.81419 1.02978 1.00560 1.47379 1.05765 1.06072 1.75199 1.21792 0.97748 0.83266 0.97516 1.22692 0.92938 0.91288 0.91533 0.94329 1.23727 0.99287 0.95173 1.01174 1.22439 1.00761 0.84259 0.91225 1.45894 1.34724 1.04288 1.46990 1.19184 0.97186 0.81827 1.32224 0.89843 1.24784 0.96287 0.96698 1.03001 1.69802 1.11516 1.28337 1.48291 0.86393 0.77887 0.85714 0.77451 1.22881 1.22396 1.18641 1.17208 0.86715 0.82322 0.77319 1.90898 1.12576 1.86617 1.47224 1.20173 0.93494 0.92518 1.16683 1.22760 0.94909 0.95056 1.08465 1.21611 0.89270 0.92912 1.11362 1.43899 1.06507 1.06239 1.56107 1.20310 0.90707 0.87839 1.01879 1.20722 0.89325 0.94894 1.05119 1.21701 0.98976 0.95484 1.00256 1.21894 0.93373 1.01434 1.00794 1.21988 0.99216 0.78554 1.01732 0.93569 0.92073 0.89794 0.92275 0.89051 0.93595 0.90765 0.96708 0.89671 0.94468 0.82308 0.82299 0.87985 0.88750 0.91636 0.90582 0.89809 0.90608 0.90328 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 8.75 59.85 0.52 1.50 16 2 N -0.61 -11.47 2.88 -182.91 -0.53 -12.00 16 3 C 0.12 2.35 5.32 -4.04 -0.02 2.33 16 4 C 0.12 2.66 4.53 -66.87 -0.30 2.36 16 5 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.15 -3.13 7.86 -25.81 -0.20 -3.33 16 7 C 0.14 3.47 7.97 -2.98 -0.02 3.45 16 8 N -0.59 -16.02 3.54 -170.76 -0.60 -16.62 16 9 C -0.18 -5.22 8.60 -15.06 -0.13 -5.35 16 10 H 0.08 2.49 4.92 -52.49 -0.26 2.23 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 12 N -0.93 -29.55 11.28 55.49 0.63 -28.92 16 13 Si 0.89 23.70 29.55 -169.99 -5.02 18.68 16 14 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 15 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 16 H -0.26 -6.45 4.89 56.52 0.28 -6.17 16 17 C 0.58 12.27 6.15 -12.59 -0.08 12.19 16 18 O -0.50 -12.57 11.72 5.25 0.06 -12.51 16 19 C -0.22 -4.03 6.07 -103.48 -0.63 -4.66 16 20 C -0.19 -2.67 8.86 -37.46 -0.33 -3.00 16 21 C -0.03 -0.32 11.40 -16.83 -0.19 -0.51 16 22 N -0.45 -6.06 3.11 -111.92 -0.35 -6.41 16 23 C 0.11 1.85 6.57 -81.64 -0.54 1.32 16 24 C -0.06 -1.10 5.23 -27.53 -0.14 -1.24 16 25 C -0.13 -1.58 5.98 -26.45 -0.16 -1.74 16 26 C -0.14 -1.38 5.92 -26.58 -0.16 -1.54 16 27 C 0.11 1.01 6.90 -3.69 -0.03 0.99 16 28 H 0.05 0.54 7.70 -51.93 -0.40 0.14 16 29 H 0.06 0.76 8.02 -51.92 -0.42 0.34 16 30 H 0.08 1.14 4.75 -51.93 -0.25 0.90 16 31 H 0.06 0.94 8.12 -51.93 -0.42 0.51 16 32 H 0.09 2.09 7.22 -51.93 -0.37 1.72 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 2.39 6.60 -51.93 -0.34 2.04 16 37 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 38 H 0.16 1.85 4.80 -52.49 -0.25 1.60 16 39 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.10 1.98 7.24 -51.93 -0.38 1.60 16 41 H 0.09 1.89 6.18 -51.93 -0.32 1.57 16 42 H 0.06 0.75 8.12 -51.93 -0.42 0.33 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -36.72 356.04 -10.27 -46.99 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.31 Total: 3.16 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.50 Total: 2.26 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -0.85 Total: -63.95 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.06 Total: -12.51 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.02 Total: 18.68 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.72 -10.27 -46.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.606 kcal (2) G-P(sol) polarization free energy of solvation -36.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds