Wall clock time and date at job start Tue Mar 31 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46495 * 119.99879 * 2 1 4 4 C 1.53007 * 109.46907 * 275.66983 * 3 2 1 5 5 H 1.08995 * 112.96121 * 67.74846 * 4 3 2 6 6 C 1.53941 * 113.77121 * 296.06681 * 4 3 2 7 7 C 1.53942 * 86.29271 * 222.09529 * 6 4 3 8 8 N 1.47582 * 113.76721 * 199.42476 * 4 3 2 9 9 C 1.36937 * 134.49266 * 318.93355 * 8 4 3 10 10 H 1.07996 * 120.00194 * 6.11798 * 9 8 4 11 11 C 1.38814 * 120.00056 * 186.11413 * 9 8 4 12 12 N 1.31618 * 119.99912 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00042 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47482 * 59.99858 * 13 11 9 15 15 H 1.48501 * 109.47073 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47087 * 299.99457 * 13 11 9 17 17 C 1.34778 * 119.99501 * 180.02562 * 2 1 3 18 18 O 1.21627 * 119.99461 * 185.21263 * 17 2 1 19 19 C 1.47262 * 120.00575 * 5.21224 * 17 2 1 20 20 C 1.46756 * 126.96608 * 322.11451 * 19 17 2 21 21 C 1.34492 * 106.36021 * 180.02562 * 20 19 17 22 22 N 1.36426 * 109.01936 * 359.97438 * 21 20 19 23 23 C 1.35219 * 109.89337 * 0.02640 * 22 21 20 24 24 C 1.50994 * 124.54456 * 179.71307 * 23 22 21 25 25 C 1.53282 * 108.31404 * 344.67750 * 24 23 22 26 26 C 1.53157 * 109.15774 * 48.19236 * 25 24 23 27 27 C 1.47010 * 126.01592 * 180.02562 * 22 21 20 28 28 H 1.08994 * 109.47169 * 264.52240 * 1 2 3 29 29 H 1.08998 * 109.46829 * 24.52037 * 1 2 3 30 30 H 1.09003 * 109.47055 * 144.52094 * 1 2 3 31 31 H 1.08992 * 109.47382 * 35.67087 * 3 2 1 32 32 H 1.09005 * 109.46904 * 155.67536 * 3 2 1 33 33 H 1.09004 * 113.74584 * 336.43941 * 6 4 3 34 34 H 1.09000 * 113.74442 * 107.63938 * 6 4 3 35 35 H 1.09005 * 113.77200 * 137.90980 * 7 6 4 36 36 H 1.09003 * 113.76815 * 269.19355 * 7 6 4 37 37 H 0.97001 * 119.99966 * 180.02562 * 12 11 9 38 38 H 1.07992 * 126.81779 * 0.02562 * 20 19 17 39 39 H 1.08003 * 125.49334 * 180.02562 * 21 20 19 40 40 H 1.08995 * 109.71233 * 104.26589 * 24 23 22 41 41 H 1.09002 * 109.71045 * 224.89161 * 24 23 22 42 42 H 1.08996 * 109.37544 * 288.35126 * 25 24 23 43 43 H 1.08994 * 109.59016 * 168.16281 * 25 24 23 44 44 H 1.09000 * 109.45948 * 170.54077 * 26 25 24 45 45 H 1.08998 * 109.46464 * 50.57374 * 26 25 24 46 46 H 1.08996 * 109.56688 * 282.25876 * 27 22 21 47 47 H 1.09001 * 109.56191 * 42.59863 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3290 1.7816 -1.4355 5 1 1.3751 2.0822 -1.8687 6 6 3.1635 0.8647 -2.3480 7 6 3.7969 2.1555 -2.8979 8 7 3.4041 2.7766 -1.6155 9 6 3.8553 3.8443 -0.8865 10 1 3.4482 4.0391 0.0947 11 6 4.8362 4.6764 -1.4085 12 7 5.3328 4.4388 -2.6040 13 14 5.4522 6.1325 -0.4138 14 1 6.0350 5.6485 0.8635 15 1 6.4916 6.8569 -1.1884 16 1 4.3203 7.0494 -0.1254 17 6 2.1388 -1.1673 -0.0005 18 8 3.3513 -1.1695 0.0952 19 6 1.4071 -2.4399 -0.1169 20 6 0.1122 -2.7719 0.4885 21 6 -0.1674 -4.0339 0.1169 22 7 0.8474 -4.5021 -0.6656 23 6 1.7954 -3.5486 -0.8088 24 6 3.0669 -3.7182 -1.6054 25 6 3.2706 -5.2133 -1.8748 26 6 1.9623 -5.8124 -2.3993 27 6 0.9238 -5.8380 -1.2743 28 1 -0.3633 -0.0981 1.0229 29 1 -0.3633 0.9350 -0.4265 30 1 -0.3633 -0.8369 -0.5965 31 1 1.6562 2.0007 0.5992 32 1 3.1902 1.1151 0.4233 33 1 3.8640 0.2277 -1.8079 34 1 2.5706 0.3179 -3.0812 35 1 4.8752 2.0887 -3.0430 36 1 3.2762 2.5665 -3.7628 37 1 6.0185 5.0200 -2.9687 38 1 -0.4956 -2.1303 1.1092 39 1 -1.0529 -4.5873 0.3927 40 1 2.9816 -3.1846 -2.5520 41 1 3.9114 -3.3277 -1.0375 42 1 3.5545 -5.7123 -0.9482 43 1 4.0566 -5.3470 -2.6180 44 1 2.1431 -6.8285 -2.7499 45 1 1.5895 -5.2048 -3.2238 46 1 1.2210 -6.5664 -0.5199 47 1 -0.0498 -6.1094 -1.6825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085646008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:19 Heat of formation + Delta-G solvation = 71.673447 kcal Electronic energy + Delta-G solvation = -27316.764205 eV Core-core repulsion = 23695.245230 eV Total energy + Delta-G solvation = -3621.518975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65622 -39.22072 -37.42772 -36.13809 -34.88022 -32.71529 -32.01929 -29.78797 -28.70155 -27.69063 -27.49899 -26.06202 -24.41396 -23.25239 -22.97837 -21.59859 -21.09951 -19.46773 -18.83383 -18.15653 -17.17363 -16.51114 -16.02104 -15.79059 -15.32063 -15.06588 -14.57843 -14.51382 -14.37708 -14.05049 -13.82614 -13.61387 -13.42241 -13.28256 -12.82484 -12.68496 -12.35880 -12.19425 -11.99603 -11.80663 -11.52799 -11.33917 -11.24836 -11.18933 -11.02669 -10.91234 -10.69071 -10.58984 -10.33478 -9.75252 -9.61001 -9.43811 -9.26665 -8.66523 -8.55337 -8.20341 -8.02186 -6.71731 -5.64131 -2.95005 1.96947 2.44899 2.65776 3.42249 3.48155 3.52064 3.53267 3.73154 4.18831 4.33375 4.45642 4.58345 4.62396 4.81404 4.93266 5.03987 5.13287 5.17710 5.33710 5.36766 5.44845 5.47532 5.50044 5.56749 5.63652 5.70922 5.74360 5.87024 5.92097 5.94384 5.96827 6.04211 6.12843 6.18203 6.30000 6.53870 6.70685 6.77316 6.89868 6.93968 6.98549 7.08055 7.19378 7.41193 7.63226 7.72700 7.90530 8.11661 8.72792 9.17474 9.84237 10.76684 11.53894 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.003180 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.231845 B = 8802.225164 C = 9474.090263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.605 5.605 3 C 0.116 3.884 4 C 0.129 3.871 5 H 0.039 0.961 6 C -0.157 4.157 7 C 0.166 3.834 8 N -0.600 5.600 9 C -0.220 4.220 10 H 0.078 0.922 11 C -0.008 4.008 12 N -0.921 5.921 13 Si 0.909 3.091 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.590 3.410 18 O -0.540 6.540 19 C -0.221 4.221 20 C -0.170 4.170 21 C -0.020 4.020 22 N -0.447 5.447 23 C 0.100 3.900 24 C -0.062 4.062 25 C -0.125 4.125 26 C -0.136 4.136 27 C 0.105 3.895 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.064 0.936 36 H 0.025 0.975 37 H 0.253 0.747 38 H 0.146 0.854 39 H 0.162 0.838 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.258 -23.498 1.703 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.337 5.337 3 C -0.007 4.007 4 C 0.021 3.979 5 H 0.057 0.943 6 C -0.195 4.195 7 C 0.040 3.960 8 N -0.327 5.327 9 C -0.348 4.348 10 H 0.095 0.905 11 C -0.205 4.205 12 N -0.568 5.568 13 Si 0.739 3.261 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.213 1.213 17 C 0.379 3.621 18 O -0.418 6.418 19 C -0.230 4.230 20 C -0.194 4.194 21 C -0.146 4.146 22 N -0.125 5.125 23 C -0.015 4.015 24 C -0.100 4.100 25 C -0.163 4.163 26 C -0.174 4.174 27 C -0.016 4.016 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.164 0.836 39 H 0.180 0.820 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.086 0.914 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.424 -23.526 1.676 26.658 hybrid contribution -0.139 1.008 0.516 1.141 sum -12.563 -22.518 2.192 25.879 Atomic orbital electron populations 1.21894 0.80328 1.03020 1.00942 1.47583 1.06584 1.06120 1.73455 1.21773 0.97906 0.82574 0.98463 1.22504 0.92646 0.89635 0.93100 0.94323 1.23780 0.99511 0.97587 0.98667 1.22121 0.99167 0.86426 0.88252 1.45993 1.33070 1.32130 1.21477 1.18951 1.16819 1.01679 0.97321 0.90461 1.24783 0.99989 0.99031 0.96659 1.69832 1.30924 1.39647 1.16432 0.86249 0.78202 0.82546 0.79079 1.21108 1.21672 1.21301 1.17368 0.86373 0.82535 0.75786 1.90766 1.13717 1.87162 1.50121 1.20025 0.98514 0.94990 1.09519 1.22112 0.96386 0.95767 1.05158 1.21570 0.94957 0.96494 1.01589 1.43865 1.16820 1.11944 1.39866 1.20180 0.92361 0.87937 1.01058 1.20499 0.93580 0.96285 0.99621 1.21650 0.97086 0.95646 1.01907 1.21884 0.95284 1.02742 0.97480 1.22020 1.01179 0.82170 0.96273 0.93285 0.91410 0.90748 0.91769 0.88829 0.89775 0.94058 0.91784 0.95732 0.93749 0.83634 0.82019 0.89737 0.87877 0.91407 0.90326 0.89650 0.90613 0.90170 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 9.09 59.85 0.54 1.55 16 2 N -0.60 -10.05 2.78 -182.91 -0.51 -10.56 16 3 C 0.12 2.29 5.42 -4.04 -0.02 2.27 16 4 C 0.13 2.83 4.58 -66.86 -0.31 2.53 16 5 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.16 -3.41 7.26 -25.80 -0.19 -3.59 16 7 C 0.17 4.24 7.38 -2.85 -0.02 4.22 16 8 N -0.60 -16.22 3.58 -169.74 -0.61 -16.82 16 9 C -0.22 -6.40 10.51 -15.06 -0.16 -6.56 16 10 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 11 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 12 N -0.92 -28.52 11.57 55.49 0.64 -27.88 16 13 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 14 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 15 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 C 0.59 10.48 6.97 -12.59 -0.09 10.40 16 18 O -0.54 -11.48 14.23 5.25 0.07 -11.41 16 19 C -0.22 -3.23 5.44 -103.48 -0.56 -3.79 16 20 C -0.17 -1.94 8.78 -37.47 -0.33 -2.27 16 21 C -0.02 -0.19 11.40 -16.83 -0.19 -0.38 16 22 N -0.45 -4.47 3.11 -111.94 -0.35 -4.82 16 23 C 0.10 1.29 6.56 -81.64 -0.54 0.75 16 24 C -0.06 -0.73 5.84 -27.59 -0.16 -0.89 16 25 C -0.13 -1.01 5.97 -26.50 -0.16 -1.17 16 26 C -0.14 -0.83 5.92 -26.58 -0.16 -0.99 16 27 C 0.10 0.66 6.90 -3.70 -0.03 0.63 16 28 H 0.05 0.51 7.39 -51.93 -0.38 0.13 16 29 H 0.07 0.80 8.03 -51.93 -0.42 0.38 16 30 H 0.07 0.85 5.88 -51.93 -0.31 0.54 16 31 H 0.06 1.19 8.11 -51.93 -0.42 0.77 16 32 H 0.09 2.14 7.20 -51.93 -0.37 1.77 16 33 H 0.08 1.94 6.80 -51.93 -0.35 1.59 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.79 7.47 -51.93 -0.39 1.40 16 36 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.15 1.41 6.55 -52.49 -0.34 1.07 16 39 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.10 1.44 7.34 -51.93 -0.38 1.06 16 42 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 46 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -35.70 370.00 -10.21 -45.92 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.56 Total: -0.31 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -2.46 Total: 2.36 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -0.82 Total: -60.08 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.07 Total: -11.41 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.70 -10.21 -45.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.590 kcal (2) G-P(sol) polarization free energy of solvation -35.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds