Wall clock time and date at job start Tue Mar 31 2020 11:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46495 * 119.99879 * 2 1 4 4 C 1.53007 * 109.46907 * 275.66983 * 3 2 1 5 5 H 1.08995 * 112.96121 * 67.74846 * 4 3 2 6 6 C 1.53941 * 113.77121 * 296.06681 * 4 3 2 7 7 C 1.53942 * 86.29271 * 222.09529 * 6 4 3 8 8 N 1.47582 * 113.76721 * 199.42476 * 4 3 2 9 9 C 1.36937 * 134.49266 * 318.93355 * 8 4 3 10 10 H 1.07996 * 120.00194 * 6.11798 * 9 8 4 11 11 C 1.38814 * 120.00056 * 186.11413 * 9 8 4 12 12 N 1.31618 * 119.99912 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00042 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47482 * 59.99858 * 13 11 9 15 15 H 1.48501 * 109.47073 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47087 * 299.99457 * 13 11 9 17 17 C 1.34778 * 119.99501 * 180.02562 * 2 1 3 18 18 O 1.21627 * 119.99461 * 185.21263 * 17 2 1 19 19 C 1.47262 * 120.00575 * 5.21224 * 17 2 1 20 20 C 1.46756 * 126.96608 * 322.11451 * 19 17 2 21 21 C 1.34492 * 106.36021 * 180.02562 * 20 19 17 22 22 N 1.36426 * 109.01936 * 359.97438 * 21 20 19 23 23 C 1.35219 * 109.89337 * 0.02640 * 22 21 20 24 24 C 1.50994 * 124.54456 * 179.71307 * 23 22 21 25 25 C 1.53282 * 108.31404 * 344.67750 * 24 23 22 26 26 C 1.53157 * 109.15774 * 48.19236 * 25 24 23 27 27 C 1.47010 * 126.01592 * 180.02562 * 22 21 20 28 28 H 1.08994 * 109.47169 * 264.52240 * 1 2 3 29 29 H 1.08998 * 109.46829 * 24.52037 * 1 2 3 30 30 H 1.09003 * 109.47055 * 144.52094 * 1 2 3 31 31 H 1.08992 * 109.47382 * 35.67087 * 3 2 1 32 32 H 1.09005 * 109.46904 * 155.67536 * 3 2 1 33 33 H 1.09004 * 113.74584 * 336.43941 * 6 4 3 34 34 H 1.09000 * 113.74442 * 107.63938 * 6 4 3 35 35 H 1.09005 * 113.77200 * 137.90980 * 7 6 4 36 36 H 1.09003 * 113.76815 * 269.19355 * 7 6 4 37 37 H 0.97001 * 119.99966 * 180.02562 * 12 11 9 38 38 H 1.07992 * 126.81779 * 0.02562 * 20 19 17 39 39 H 1.08003 * 125.49334 * 180.02562 * 21 20 19 40 40 H 1.08995 * 109.71233 * 104.26589 * 24 23 22 41 41 H 1.09002 * 109.71045 * 224.89161 * 24 23 22 42 42 H 1.08996 * 109.37544 * 288.35126 * 25 24 23 43 43 H 1.08994 * 109.59016 * 168.16281 * 25 24 23 44 44 H 1.09000 * 109.45948 * 170.54077 * 26 25 24 45 45 H 1.08998 * 109.46464 * 50.57374 * 26 25 24 46 46 H 1.08996 * 109.56688 * 282.25876 * 27 22 21 47 47 H 1.09001 * 109.56191 * 42.59863 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3290 1.7816 -1.4355 5 1 1.3751 2.0822 -1.8687 6 6 3.1635 0.8647 -2.3480 7 6 3.7969 2.1555 -2.8979 8 7 3.4041 2.7766 -1.6155 9 6 3.8553 3.8443 -0.8865 10 1 3.4482 4.0391 0.0947 11 6 4.8362 4.6764 -1.4085 12 7 5.3328 4.4388 -2.6040 13 14 5.4522 6.1325 -0.4138 14 1 6.0350 5.6485 0.8635 15 1 6.4916 6.8569 -1.1884 16 1 4.3203 7.0494 -0.1254 17 6 2.1388 -1.1673 -0.0005 18 8 3.3513 -1.1695 0.0952 19 6 1.4071 -2.4399 -0.1169 20 6 0.1122 -2.7719 0.4885 21 6 -0.1674 -4.0339 0.1169 22 7 0.8474 -4.5021 -0.6656 23 6 1.7954 -3.5486 -0.8088 24 6 3.0669 -3.7182 -1.6054 25 6 3.2706 -5.2133 -1.8748 26 6 1.9623 -5.8124 -2.3993 27 6 0.9238 -5.8380 -1.2743 28 1 -0.3633 -0.0981 1.0229 29 1 -0.3633 0.9350 -0.4265 30 1 -0.3633 -0.8369 -0.5965 31 1 1.6562 2.0007 0.5992 32 1 3.1902 1.1151 0.4233 33 1 3.8640 0.2277 -1.8079 34 1 2.5706 0.3179 -3.0812 35 1 4.8752 2.0887 -3.0430 36 1 3.2762 2.5665 -3.7628 37 1 6.0185 5.0200 -2.9687 38 1 -0.4956 -2.1303 1.1092 39 1 -1.0529 -4.5873 0.3927 40 1 2.9816 -3.1846 -2.5520 41 1 3.9114 -3.3277 -1.0375 42 1 3.5545 -5.7123 -0.9482 43 1 4.0566 -5.3470 -2.6180 44 1 2.1431 -6.8285 -2.7499 45 1 1.5895 -5.2048 -3.2238 46 1 1.2210 -6.5664 -0.5199 47 1 -0.0498 -6.1094 -1.6825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085646008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:18 Heat of formation + Delta-G solvation = 49.988642 kcal Electronic energy + Delta-G solvation = -27317.704529 eV Core-core repulsion = 23695.245230 eV Total energy + Delta-G solvation = -3622.459299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.48848 -40.67370 -39.22314 -36.86835 -36.24622 -34.23020 -33.51122 -30.76151 -29.87760 -29.83195 -28.50701 -27.24480 -25.31509 -25.13532 -24.49144 -22.76166 -21.93600 -20.86153 -20.40777 -19.07831 -18.65833 -18.08072 -17.28504 -17.05534 -16.63403 -16.31113 -16.17839 -15.81750 -15.23519 -15.15505 -15.10845 -14.71898 -14.66768 -14.23155 -14.10148 -13.86870 -13.82447 -13.61823 -13.33621 -13.04571 -12.89509 -12.73228 -12.56888 -12.45784 -12.35668 -12.29593 -11.97162 -11.82509 -11.81910 -11.71563 -11.60401 -11.24689 -10.84071 -10.76021 -9.57435 -9.37376 -9.01915 -8.86380 -7.88780 -5.21545 0.93510 1.43829 1.48859 1.54247 1.62478 1.86498 2.20672 2.47835 2.55062 3.31982 3.43971 3.63511 3.76546 3.83919 3.86246 3.90400 4.00518 4.24839 4.30711 4.39262 4.41693 4.43110 4.43914 4.47917 4.50730 4.66562 4.74281 4.83898 4.85583 4.87752 4.89589 4.99334 4.99778 5.02280 5.05420 5.10087 5.16088 5.22919 5.28326 5.29302 5.51607 5.63171 5.74804 5.89544 5.94706 6.18972 6.47070 6.63471 6.92489 7.39852 7.62591 8.60150 9.29595 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022829 B = 0.003180 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.231845 B = 8802.225164 C = 9474.090263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.604 5.604 3 C 0.131 3.869 4 C 0.136 3.864 5 H 0.059 0.941 6 C -0.131 4.131 7 C 0.163 3.837 8 N -0.628 5.628 9 C -0.231 4.231 10 H 0.086 0.914 11 C -0.071 4.071 12 N -0.957 5.957 13 Si 0.980 3.020 14 H -0.279 1.279 15 H -0.294 1.294 16 H -0.273 1.273 17 C 0.584 3.416 18 O -0.591 6.591 19 C -0.256 4.256 20 C -0.184 4.184 21 C -0.002 4.002 22 N -0.442 5.442 23 C 0.087 3.913 24 C -0.064 4.064 25 C -0.121 4.121 26 C -0.132 4.132 27 C 0.097 3.903 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.029 0.971 36 H 0.022 0.978 37 H 0.247 0.753 38 H 0.161 0.839 39 H 0.205 0.795 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.566 -25.795 2.387 30.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.336 5.336 3 C 0.006 3.994 4 C 0.029 3.971 5 H 0.076 0.924 6 C -0.169 4.169 7 C 0.037 3.963 8 N -0.355 5.355 9 C -0.359 4.359 10 H 0.103 0.897 11 C -0.264 4.264 12 N -0.606 5.606 13 Si 0.807 3.193 14 H -0.205 1.205 15 H -0.221 1.221 16 H -0.198 1.198 17 C 0.375 3.625 18 O -0.473 6.473 19 C -0.266 4.266 20 C -0.207 4.207 21 C -0.129 4.129 22 N -0.118 5.118 23 C -0.030 4.030 24 C -0.102 4.102 25 C -0.158 4.158 26 C -0.169 4.169 27 C -0.022 4.022 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.056 0.944 38 H 0.179 0.821 39 H 0.221 0.779 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.134 0.866 45 H 0.087 0.913 46 H 0.115 0.885 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.811 -25.866 2.374 30.408 hybrid contribution 0.850 1.606 0.301 1.842 sum -14.961 -24.260 2.675 28.627 Atomic orbital electron populations 1.22151 0.77249 1.04039 1.02837 1.47630 1.08328 1.04578 1.73022 1.21338 0.96813 0.84473 0.96776 1.22643 0.92115 0.87752 0.94570 0.92382 1.23463 0.98898 0.95922 0.98601 1.22040 0.97311 0.88648 0.88266 1.46322 1.34946 1.32445 1.21784 1.19389 1.16677 1.01890 0.97922 0.89667 1.25686 1.00609 1.02127 0.97975 1.70033 1.31631 1.40720 1.18243 0.85137 0.77658 0.79024 0.77445 1.20500 1.22066 1.19828 1.17980 0.86002 0.83848 0.74664 1.90733 1.16111 1.87956 1.52458 1.19972 1.00407 0.94079 1.12148 1.22304 0.95275 0.97170 1.05971 1.22209 0.95327 0.95874 0.99492 1.44182 1.15880 1.12585 1.39188 1.20232 0.93093 0.88496 1.01159 1.20423 0.92429 0.98924 0.98442 1.21635 0.99002 0.92844 1.02343 1.21891 0.93753 1.04049 0.97200 1.22404 1.02823 0.80348 0.96656 0.90976 0.90598 0.89420 0.90269 0.92793 0.91686 0.91113 0.95249 0.95985 0.94377 0.82136 0.77861 0.90769 0.91417 0.91409 0.89502 0.86633 0.91267 0.88487 0.86525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.76 9.09 127.77 1.16 2.92 16 2 N -0.60 -19.95 2.78 -850.84 -2.36 -22.31 16 3 C 0.13 5.22 5.42 86.38 0.47 5.69 16 4 C 0.14 6.00 4.58 45.09 0.21 6.21 16 5 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 6 C -0.13 -5.82 7.26 31.25 0.23 -5.60 16 7 C 0.16 8.69 7.38 86.44 0.64 9.33 16 8 N -0.63 -34.89 3.58 -690.92 -2.47 -37.36 16 9 C -0.23 -13.70 10.51 84.03 0.88 -12.81 16 10 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 11 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 12 N -0.96 -61.42 11.57 21.65 0.25 -61.17 16 13 Si 0.98 48.20 29.55 68.60 2.03 50.23 16 14 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 15 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 16 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 17 C 0.58 21.35 6.97 86.62 0.60 21.95 16 18 O -0.59 -26.95 14.23 -4.12 -0.06 -27.01 16 19 C -0.26 -7.39 5.44 -19.12 -0.10 -7.49 16 20 C -0.18 -3.73 8.78 23.64 0.21 -3.52 16 21 C 0.00 -0.04 11.40 83.12 0.95 0.91 16 22 N -0.44 -7.50 3.11 -508.06 -1.58 -9.08 16 23 C 0.09 2.20 6.56 41.68 0.27 2.48 16 24 C -0.06 -1.58 5.84 30.04 0.18 -1.40 16 25 C -0.12 -1.83 5.97 30.74 0.18 -1.65 16 26 C -0.13 -1.20 5.92 30.69 0.18 -1.02 16 27 C 0.10 0.81 6.90 86.33 0.60 1.41 16 28 H 0.07 1.30 7.39 -2.39 -0.02 1.28 16 29 H 0.08 1.58 8.03 -2.39 -0.02 1.56 16 30 H 0.09 1.77 5.88 -2.39 -0.01 1.75 16 31 H 0.08 2.89 8.11 -2.39 -0.02 2.87 16 32 H 0.05 2.60 7.20 -2.38 -0.02 2.58 16 33 H 0.06 3.18 6.80 -2.38 -0.02 3.16 16 34 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.03 1.74 7.47 -2.38 -0.02 1.72 16 36 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.25 15.40 8.31 -92.71 -0.77 14.62 16 38 H 0.16 2.61 6.55 -2.91 -0.02 2.59 16 39 H 0.20 1.29 8.06 -2.91 -0.02 1.26 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.07 2.11 7.34 -2.39 -0.02 2.09 16 42 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 43 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16 46 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -82.91 370.00 3.87 -79.04 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.95 Total: 14.10 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 7.12 Total: 13.57 kcal Atomic # 7 Polarization: -123.76 SS G_CDS: -6.17 Total: -129.93 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.06 Total: -27.01 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -82.91 3.87 -79.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.033 kcal (2) G-P(sol) polarization free energy of solvation -82.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds