Wall clock time and date at job start Tue Mar 31 2020 11:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 119.99935 * 2 1 4 4 C 1.53003 * 109.46870 * 275.32776 * 3 2 1 5 5 H 1.09002 * 112.96318 * 65.79859 * 4 3 2 6 6 C 1.53943 * 113.77080 * 294.12650 * 4 3 2 7 7 C 1.53947 * 86.29006 * 222.09160 * 6 4 3 8 8 N 1.47583 * 86.24063 * 23.54875 * 7 6 4 9 9 C 1.36934 * 134.49171 * 155.42700 * 8 7 6 10 10 H 1.07997 * 120.00169 * 185.15648 * 9 8 7 11 11 C 1.38816 * 119.99965 * 5.15895 * 9 8 7 12 12 N 1.31620 * 120.00038 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99783 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47390 * 90.00253 * 13 11 9 15 15 H 1.48498 * 109.47120 * 210.00110 * 13 11 9 16 16 H 1.48501 * 109.47259 * 330.00150 * 13 11 9 17 17 C 1.34776 * 120.00359 * 179.97438 * 2 1 3 18 18 O 1.21626 * 120.00452 * 185.36944 * 17 2 1 19 19 C 1.47266 * 119.99615 * 5.37228 * 17 2 1 20 20 C 1.46682 * 126.94234 * 34.76602 * 19 17 2 21 21 C 1.34487 * 106.33259 * 179.82724 * 20 19 17 22 22 N 1.36452 * 108.85507 * 0.43424 * 21 20 19 23 23 H 0.97006 * 124.85120 * 179.68747 * 22 21 20 24 24 C 1.34655 * 110.29831 * 359.70997 * 22 21 20 25 25 C 1.50697 * 125.80264 * 180.02562 * 24 22 21 26 26 C 1.53780 * 113.61477 * 37.47664 * 25 24 22 27 27 C 1.53772 * 87.08306 * 220.01556 * 26 25 24 28 28 C 1.53775 * 113.61815 * 299.97810 * 25 24 22 29 29 H 1.08997 * 109.47122 * 85.72263 * 1 2 3 30 30 H 1.09004 * 109.47328 * 205.72053 * 1 2 3 31 31 H 1.09002 * 109.47323 * 325.71887 * 1 2 3 32 32 H 1.08997 * 109.47441 * 155.33328 * 3 2 1 33 33 H 1.08997 * 109.47233 * 35.32644 * 3 2 1 34 34 H 1.08997 * 113.74629 * 107.74459 * 6 4 3 35 35 H 1.09005 * 113.84022 * 336.44617 * 6 4 3 36 36 H 1.08995 * 113.76865 * 137.90603 * 7 6 4 37 37 H 1.08998 * 113.76765 * 269.18940 * 7 6 4 38 38 H 0.97001 * 119.99830 * 180.02562 * 12 11 9 39 39 H 1.08004 * 126.83679 * 359.97438 * 20 19 17 40 40 H 1.08004 * 125.57284 * 180.14413 * 21 20 19 41 41 H 1.09006 * 112.85072 * 168.78111 * 25 24 22 42 42 H 1.09000 * 113.61008 * 334.56861 * 26 25 24 43 43 H 1.09000 * 113.61361 * 105.46673 * 26 25 24 44 44 H 1.08996 * 113.61690 * 270.88586 * 27 26 25 45 45 H 1.09004 * 113.61648 * 139.97815 * 27 26 25 46 46 H 1.09001 * 113.61770 * 254.52716 * 28 25 24 47 47 H 1.08999 * 113.61293 * 25.42976 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3364 1.7773 -1.4363 5 1 1.3807 2.0449 -1.8871 6 6 3.2146 0.8822 -2.3293 7 6 3.8156 2.1895 -2.8769 8 7 3.3843 2.8057 -1.6071 9 6 3.7922 3.8923 -0.8805 10 1 3.3532 4.0914 0.0860 11 6 4.7701 4.7380 -1.3861 12 7 5.3048 4.4956 -2.5641 13 14 5.3260 6.2206 -0.3951 14 1 6.4632 5.8342 0.4782 15 1 5.7563 7.3005 -1.3192 16 1 4.2006 6.7059 0.4434 17 6 2.1389 -1.1672 0.0005 18 8 3.3512 -1.1694 0.0991 19 6 1.4074 -2.4398 -0.1183 20 6 0.1915 -2.6880 -0.9003 21 6 -0.1174 -3.9841 -0.7180 22 7 0.8043 -4.5437 0.1183 23 1 0.7994 -5.4692 0.4089 24 6 1.7213 -3.6275 0.4829 25 6 2.8943 -3.8698 1.3973 26 6 3.5452 -5.2507 1.2117 27 6 3.6855 -5.3031 2.7422 28 6 2.4912 -4.3364 2.8060 29 1 -0.3633 0.0766 -1.0248 30 1 -0.3634 -0.9259 0.4460 31 1 -0.3634 0.8491 0.5788 32 1 3.1879 1.1165 0.4289 33 1 1.6530 2.0026 0.5942 34 1 2.6518 0.3140 -3.0699 35 1 3.9264 0.2702 -1.7753 36 1 4.8977 2.1561 -3.0037 37 1 3.2965 2.5786 -3.7527 38 1 5.9883 5.0864 -2.9172 39 1 -0.3471 -1.9729 -1.5045 40 1 -0.9602 -4.4970 -1.1574 41 1 3.6079 -3.0458 1.3978 42 1 2.8664 -6.0027 0.8094 43 1 4.4998 -5.2164 0.6867 44 1 4.6163 -4.8719 3.1103 45 1 3.4756 -6.2850 3.1665 46 1 2.5949 -3.5641 3.5682 47 1 1.5243 -4.8385 2.8397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085817211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:26 Heat of formation + Delta-G solvation = 92.163742 kcal Electronic energy + Delta-G solvation = -27102.385827 eV Core-core repulsion = 23481.755378 eV Total energy + Delta-G solvation = -3620.630449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55670 -39.18599 -38.39770 -37.39627 -34.94731 -32.06581 -31.21446 -29.88431 -28.26440 -27.68024 -26.37383 -25.89052 -25.09586 -23.21359 -22.94924 -21.20916 -20.96612 -19.62105 -18.84247 -18.39192 -17.83974 -16.58787 -16.00073 -15.71942 -15.52757 -15.20197 -14.72528 -14.64024 -14.31737 -13.89752 -13.57968 -13.33805 -13.14719 -12.88797 -12.79620 -12.54122 -12.42945 -12.31254 -12.22931 -12.12149 -11.69169 -11.25797 -10.96717 -10.90852 -10.72969 -10.69796 -10.59873 -10.52928 -10.30249 -9.73922 -9.59389 -9.48245 -9.25201 -8.79794 -8.66482 -8.26605 -8.05883 -6.71632 -5.63680 -2.94698 1.85974 2.40952 3.00745 3.47404 3.48825 3.52681 3.53678 3.61131 4.32292 4.41630 4.43962 4.57983 4.71193 4.86070 4.95018 5.09006 5.30150 5.33438 5.38164 5.41752 5.45232 5.55923 5.59137 5.62776 5.67304 5.72712 5.75016 5.78529 5.86311 5.90001 5.99784 6.10423 6.14973 6.24960 6.28651 6.54965 6.70029 6.72851 6.86482 6.93931 6.94237 7.02131 7.33059 7.42369 7.64454 7.74487 7.87756 8.12273 8.69226 9.17893 9.84330 10.77008 11.54124 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018615 B = 0.003183 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.819668 B = 8795.150530 C = 9431.684350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.604 5.604 3 C 0.117 3.883 4 C 0.129 3.871 5 H 0.040 0.960 6 C -0.157 4.157 7 C 0.165 3.835 8 N -0.601 5.601 9 C -0.219 4.219 10 H 0.078 0.922 11 C -0.009 4.009 12 N -0.921 5.921 13 Si 0.909 3.091 14 H -0.289 1.289 15 H -0.292 1.292 16 H -0.282 1.282 17 C 0.589 3.411 18 O -0.540 6.540 19 C -0.216 4.216 20 C -0.165 4.165 21 C -0.021 4.021 22 N -0.553 5.553 23 H 0.411 0.589 24 C 0.105 3.895 25 C -0.052 4.052 26 C -0.136 4.136 27 C -0.140 4.140 28 C -0.135 4.135 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.024 0.976 38 H 0.252 0.748 39 H 0.146 0.854 40 H 0.167 0.833 41 H 0.130 0.870 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.086 0.914 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.807 -22.707 7.505 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.337 5.337 3 C -0.006 4.006 4 C 0.021 3.979 5 H 0.058 0.942 6 C -0.195 4.195 7 C 0.039 3.961 8 N -0.327 5.327 9 C -0.347 4.347 10 H 0.096 0.904 11 C -0.205 4.205 12 N -0.568 5.568 13 Si 0.739 3.261 14 H -0.216 1.216 15 H -0.218 1.218 16 H -0.208 1.208 17 C 0.378 3.622 18 O -0.418 6.418 19 C -0.226 4.226 20 C -0.190 4.190 21 C -0.148 4.148 22 N -0.148 5.148 23 H 0.247 0.753 24 C -0.012 4.012 25 C -0.071 4.071 26 C -0.173 4.173 27 C -0.178 4.178 28 C -0.173 4.173 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.062 0.938 39 H 0.164 0.836 40 H 0.184 0.816 41 H 0.148 0.852 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.104 0.896 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.006 -22.496 7.632 26.617 hybrid contribution -0.109 0.644 0.305 0.721 sum -12.114 -21.851 7.937 26.215 Atomic orbital electron populations 1.21881 0.80264 1.02645 1.01394 1.47572 1.06595 1.06145 1.73395 1.21784 0.97834 0.82485 0.98545 1.22549 0.92881 0.89339 0.93126 0.94232 1.23778 0.99485 0.97495 0.98766 1.22099 0.99291 0.86337 0.88333 1.46005 1.34470 1.29661 1.22595 1.18990 1.16956 1.00196 0.98544 0.90433 1.24782 0.99915 0.98988 0.96849 1.69846 1.30160 1.39059 1.17727 0.86167 0.78550 0.82518 0.78823 1.21612 1.21783 1.20774 1.17378 0.86411 0.82558 0.75815 1.90756 1.13626 1.87093 1.50285 1.20226 1.00556 0.93607 1.08224 1.22149 0.97274 0.95630 1.03919 1.21681 0.97540 0.94863 1.00755 1.41439 1.22436 1.11774 1.39136 0.75271 1.19926 0.92962 0.88289 0.99978 1.21470 0.93835 0.99451 0.92379 1.22952 1.01468 0.96021 0.96897 1.22824 0.99099 0.99687 0.96152 1.22999 0.98203 0.99302 0.96791 0.92990 0.90618 0.91863 0.88898 0.91709 0.93987 0.89802 0.91683 0.95797 0.93801 0.83591 0.81583 0.85186 0.90920 0.90519 0.89560 0.91372 0.90762 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 9.15 59.84 0.55 1.52 16 2 N -0.60 -9.80 2.80 -182.91 -0.51 -10.31 16 3 C 0.12 2.27 5.49 -4.04 -0.02 2.25 16 4 C 0.13 2.83 4.58 -66.74 -0.31 2.52 16 5 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 6 C -0.16 -3.46 7.31 -25.79 -0.19 -3.65 16 7 C 0.16 4.26 7.38 -2.97 -0.02 4.24 16 8 N -0.60 -16.26 3.58 -169.73 -0.61 -16.86 16 9 C -0.22 -6.36 10.52 -15.06 -0.16 -6.52 16 10 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 11 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 12 N -0.92 -28.57 11.52 55.49 0.64 -27.93 16 13 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.59 10.16 7.01 -12.59 -0.09 10.07 16 18 O -0.54 -11.18 13.68 5.25 0.07 -11.11 16 19 C -0.22 -3.00 5.34 -103.35 -0.55 -3.55 16 20 C -0.17 -1.81 8.84 -37.50 -0.33 -2.14 16 21 C -0.02 -0.17 11.89 -16.82 -0.20 -0.37 16 22 N -0.55 -4.57 5.72 -9.10 -0.05 -4.62 16 23 H 0.41 2.16 8.21 -40.82 -0.34 1.82 16 24 C 0.11 1.22 6.22 -81.88 -0.51 0.71 16 25 C -0.05 -0.57 4.02 -90.96 -0.37 -0.94 16 26 C -0.14 -1.15 7.62 -25.92 -0.20 -1.35 16 27 C -0.14 -1.05 8.08 -25.92 -0.21 -1.26 16 28 C -0.14 -1.15 7.63 -25.92 -0.20 -1.35 16 29 H 0.05 0.57 7.53 -51.93 -0.39 0.18 16 30 H 0.08 0.80 5.81 -51.93 -0.30 0.50 16 31 H 0.06 0.69 8.00 -51.93 -0.42 0.28 16 32 H 0.09 2.09 7.21 -51.93 -0.37 1.72 16 33 H 0.06 1.18 8.00 -51.93 -0.42 0.77 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.99 6.88 -51.93 -0.36 1.63 16 36 H 0.06 1.84 7.40 -51.93 -0.38 1.46 16 37 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.15 1.43 6.79 -52.48 -0.36 1.08 16 40 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.13 1.83 6.47 -51.93 -0.34 1.49 16 42 H 0.07 0.49 7.21 -51.93 -0.37 0.12 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 LS Contribution 373.56 15.07 5.63 5.63 Total: -1.00 -35.35 373.56 -10.14 -45.49 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.39 Total: 1.97 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: -2.90 Total: -0.16 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.53 Total: -59.73 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.07 Total: -11.11 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.35 -10.14 -45.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085817211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.654 kcal (2) G-P(sol) polarization free energy of solvation -35.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds