Wall clock time and date at job start Tue Mar 31 2020 11:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46501 * 119.99935 * 2 1 4 4 C 1.53003 * 109.46870 * 275.32776 * 3 2 1 5 5 H 1.09002 * 112.96318 * 65.79859 * 4 3 2 6 6 C 1.53943 * 113.77080 * 294.12650 * 4 3 2 7 7 C 1.53947 * 86.29006 * 222.09160 * 6 4 3 8 8 N 1.47583 * 86.24063 * 23.54875 * 7 6 4 9 9 C 1.36934 * 134.49171 * 155.42700 * 8 7 6 10 10 H 1.07997 * 120.00169 * 185.15648 * 9 8 7 11 11 C 1.38816 * 119.99965 * 5.15895 * 9 8 7 12 12 N 1.31620 * 120.00038 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99783 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47390 * 90.00253 * 13 11 9 15 15 H 1.48498 * 109.47120 * 210.00110 * 13 11 9 16 16 H 1.48501 * 109.47259 * 330.00150 * 13 11 9 17 17 C 1.34776 * 120.00359 * 179.97438 * 2 1 3 18 18 O 1.21626 * 120.00452 * 185.36944 * 17 2 1 19 19 C 1.47266 * 119.99615 * 5.37228 * 17 2 1 20 20 C 1.46682 * 126.94234 * 34.76602 * 19 17 2 21 21 C 1.34487 * 106.33259 * 179.82724 * 20 19 17 22 22 N 1.36452 * 108.85507 * 0.43424 * 21 20 19 23 23 H 0.97006 * 124.85120 * 179.68747 * 22 21 20 24 24 C 1.34655 * 110.29831 * 359.70997 * 22 21 20 25 25 C 1.50697 * 125.80264 * 180.02562 * 24 22 21 26 26 C 1.53780 * 113.61477 * 37.47664 * 25 24 22 27 27 C 1.53772 * 87.08306 * 220.01556 * 26 25 24 28 28 C 1.53775 * 113.61815 * 299.97810 * 25 24 22 29 29 H 1.08997 * 109.47122 * 85.72263 * 1 2 3 30 30 H 1.09004 * 109.47328 * 205.72053 * 1 2 3 31 31 H 1.09002 * 109.47323 * 325.71887 * 1 2 3 32 32 H 1.08997 * 109.47441 * 155.33328 * 3 2 1 33 33 H 1.08997 * 109.47233 * 35.32644 * 3 2 1 34 34 H 1.08997 * 113.74629 * 107.74459 * 6 4 3 35 35 H 1.09005 * 113.84022 * 336.44617 * 6 4 3 36 36 H 1.08995 * 113.76865 * 137.90603 * 7 6 4 37 37 H 1.08998 * 113.76765 * 269.18940 * 7 6 4 38 38 H 0.97001 * 119.99830 * 180.02562 * 12 11 9 39 39 H 1.08004 * 126.83679 * 359.97438 * 20 19 17 40 40 H 1.08004 * 125.57284 * 180.14413 * 21 20 19 41 41 H 1.09006 * 112.85072 * 168.78111 * 25 24 22 42 42 H 1.09000 * 113.61008 * 334.56861 * 26 25 24 43 43 H 1.09000 * 113.61361 * 105.46673 * 26 25 24 44 44 H 1.08996 * 113.61690 * 270.88586 * 27 26 25 45 45 H 1.09004 * 113.61648 * 139.97815 * 27 26 25 46 46 H 1.09001 * 113.61770 * 254.52716 * 28 25 24 47 47 H 1.08999 * 113.61293 * 25.42976 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3364 1.7773 -1.4363 5 1 1.3807 2.0449 -1.8871 6 6 3.2146 0.8822 -2.3293 7 6 3.8156 2.1895 -2.8769 8 7 3.3843 2.8057 -1.6071 9 6 3.7922 3.8923 -0.8805 10 1 3.3532 4.0914 0.0860 11 6 4.7701 4.7380 -1.3861 12 7 5.3048 4.4956 -2.5641 13 14 5.3260 6.2206 -0.3951 14 1 6.4632 5.8342 0.4782 15 1 5.7563 7.3005 -1.3192 16 1 4.2006 6.7059 0.4434 17 6 2.1389 -1.1672 0.0005 18 8 3.3512 -1.1694 0.0991 19 6 1.4074 -2.4398 -0.1183 20 6 0.1915 -2.6880 -0.9003 21 6 -0.1174 -3.9841 -0.7180 22 7 0.8043 -4.5437 0.1183 23 1 0.7994 -5.4692 0.4089 24 6 1.7213 -3.6275 0.4829 25 6 2.8943 -3.8698 1.3973 26 6 3.5452 -5.2507 1.2117 27 6 3.6855 -5.3031 2.7422 28 6 2.4912 -4.3364 2.8060 29 1 -0.3633 0.0766 -1.0248 30 1 -0.3634 -0.9259 0.4460 31 1 -0.3634 0.8491 0.5788 32 1 3.1879 1.1165 0.4289 33 1 1.6530 2.0026 0.5942 34 1 2.6518 0.3140 -3.0699 35 1 3.9264 0.2702 -1.7753 36 1 4.8977 2.1561 -3.0037 37 1 3.2965 2.5786 -3.7527 38 1 5.9883 5.0864 -2.9172 39 1 -0.3471 -1.9729 -1.5045 40 1 -0.9602 -4.4970 -1.1574 41 1 3.6079 -3.0458 1.3978 42 1 2.8664 -6.0027 0.8094 43 1 4.4998 -5.2164 0.6867 44 1 4.6163 -4.8719 3.1103 45 1 3.4756 -6.2850 3.1665 46 1 2.5949 -3.5641 3.5682 47 1 1.5243 -4.8385 2.8397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085817211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:25 Heat of formation + Delta-G solvation = 70.110023 kcal Electronic energy + Delta-G solvation = -27103.342148 eV Core-core repulsion = 23481.755378 eV Total energy + Delta-G solvation = -3621.586770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.37413 -40.60807 -39.22079 -39.07919 -36.32500 -34.22867 -32.19748 -30.65087 -29.85454 -29.69283 -27.47886 -26.56317 -25.98219 -25.28905 -24.49997 -22.44629 -21.79477 -20.81851 -20.34155 -19.44922 -18.73097 -18.57669 -17.40283 -16.93632 -16.68830 -16.47087 -16.35507 -15.79912 -15.41596 -15.32930 -15.02669 -14.66319 -14.25150 -14.01649 -13.89628 -13.70868 -13.43400 -13.39011 -13.33294 -13.21328 -13.06511 -12.94295 -12.79900 -12.58336 -12.48576 -12.24860 -11.81957 -11.66658 -11.58423 -11.39863 -11.24725 -11.23262 -10.85059 -10.74928 -9.65748 -9.51747 -9.01549 -8.85989 -7.88251 -5.21237 0.89190 1.44093 1.47842 1.55645 1.64662 2.06617 2.42861 2.44770 2.55783 3.32486 3.44480 3.61070 3.69787 3.77074 3.86756 3.98996 4.01649 4.22066 4.26082 4.35661 4.39970 4.46565 4.50125 4.58760 4.69135 4.71983 4.76722 4.82068 4.84984 4.86816 4.99481 5.01520 5.03099 5.05000 5.06026 5.10311 5.14598 5.23421 5.32616 5.51022 5.52445 5.63796 5.75217 5.88954 5.95030 6.09870 6.61110 6.75521 6.92916 7.41206 7.62826 8.60356 9.30067 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018615 B = 0.003183 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.819668 B = 8795.150530 C = 9431.684350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.604 5.604 3 C 0.131 3.869 4 C 0.137 3.863 5 H 0.061 0.939 6 C -0.132 4.132 7 C 0.162 3.838 8 N -0.629 5.629 9 C -0.228 4.228 10 H 0.087 0.913 11 C -0.073 4.073 12 N -0.958 5.958 13 Si 0.980 3.020 14 H -0.289 1.289 15 H -0.294 1.294 16 H -0.264 1.264 17 C 0.582 3.418 18 O -0.590 6.590 19 C -0.255 4.255 20 C -0.185 4.185 21 C 0.005 3.995 22 N -0.535 5.535 23 H 0.429 0.571 24 C 0.105 3.895 25 C -0.068 4.068 26 C -0.129 4.129 27 C -0.133 4.133 28 C -0.127 4.127 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.029 0.971 37 H 0.022 0.978 38 H 0.247 0.753 39 H 0.155 0.845 40 H 0.210 0.790 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.062 0.938 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.125 -25.041 8.382 30.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.336 5.336 3 C 0.007 3.993 4 C 0.031 3.969 5 H 0.078 0.922 6 C -0.170 4.170 7 C 0.036 3.964 8 N -0.355 5.355 9 C -0.357 4.357 10 H 0.104 0.896 11 C -0.265 4.265 12 N -0.607 5.607 13 Si 0.808 3.192 14 H -0.216 1.216 15 H -0.220 1.220 16 H -0.188 1.188 17 C 0.373 3.627 18 O -0.472 6.472 19 C -0.265 4.265 20 C -0.208 4.208 21 C -0.123 4.123 22 N -0.132 5.132 23 H 0.269 0.731 24 C -0.014 4.014 25 C -0.088 4.088 26 C -0.167 4.167 27 C -0.170 4.170 28 C -0.164 4.164 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.040 0.960 38 H 0.056 0.944 39 H 0.173 0.827 40 H 0.227 0.773 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.081 0.919 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.400 -24.877 8.533 30.477 hybrid contribution 0.884 1.267 0.025 1.545 sum -14.516 -23.610 8.558 29.007 Atomic orbital electron populations 1.22131 0.77239 1.04141 1.02767 1.47612 1.08292 1.04591 1.73067 1.21338 0.96810 0.84476 0.96719 1.22682 0.92390 0.87210 0.94643 0.92196 1.23466 0.98903 0.95860 0.98753 1.22013 0.97310 0.88625 0.88435 1.46335 1.36319 1.30053 1.22841 1.19429 1.16724 1.00410 0.99090 0.89568 1.25693 1.00447 1.02224 0.98177 1.70048 1.30912 1.40157 1.19598 0.85055 0.78280 0.78585 0.77294 1.21600 1.22044 1.18838 1.18033 0.86077 0.83910 0.74664 1.90727 1.16019 1.87882 1.52580 1.20135 1.02538 0.92659 1.11188 1.22292 0.96597 0.97298 1.04622 1.22299 0.97403 0.93956 0.98667 1.41422 1.21316 1.12150 1.38278 0.73108 1.19914 0.93360 0.88444 0.99644 1.21395 0.93580 0.99396 0.94387 1.22982 1.01127 0.94899 0.97695 1.22786 0.98289 1.00527 0.95393 1.22993 0.99645 0.99192 0.94604 0.91518 0.88923 0.90673 0.92812 0.90312 0.91098 0.91926 0.95264 0.96016 0.94419 0.82709 0.77285 0.89521 0.88354 0.91885 0.90502 0.88915 0.91949 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.72 9.15 127.77 1.17 2.88 16 2 N -0.60 -19.49 2.80 -850.86 -2.38 -21.87 16 3 C 0.13 5.19 5.49 86.38 0.47 5.67 16 4 C 0.14 6.04 4.58 45.05 0.21 6.25 16 5 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 6 C -0.13 -5.94 7.31 31.25 0.23 -5.71 16 7 C 0.16 8.70 7.38 86.48 0.64 9.34 16 8 N -0.63 -34.91 3.58 -690.89 -2.48 -37.38 16 9 C -0.23 -13.52 10.52 84.03 0.88 -12.64 16 10 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 11 C -0.07 -4.41 5.50 84.86 0.47 -3.94 16 12 N -0.96 -61.63 11.52 21.65 0.25 -61.38 16 13 Si 0.98 48.13 29.55 68.60 2.03 50.16 16 14 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 15 H -0.29 -14.43 7.11 99.48 0.71 -13.73 16 16 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 17 C 0.58 20.63 7.01 86.62 0.61 21.24 16 18 O -0.59 -26.28 13.68 -4.11 -0.06 -26.34 16 19 C -0.25 -6.88 5.34 -19.04 -0.10 -6.98 16 20 C -0.18 -3.49 8.84 23.62 0.21 -3.28 16 21 C 0.00 0.05 11.89 83.12 0.99 1.04 16 22 N -0.54 -6.87 5.72 -182.72 -1.04 -7.91 16 23 H 0.43 2.49 8.21 -92.70 -0.76 1.73 16 24 C 0.11 2.30 6.22 41.78 0.26 2.56 16 25 C -0.07 -1.50 4.02 -11.02 -0.04 -1.54 16 26 C -0.13 -2.04 7.62 31.12 0.24 -1.80 16 27 C -0.13 -1.79 8.08 31.12 0.25 -1.54 16 28 C -0.13 -2.00 7.63 31.12 0.24 -1.76 16 29 H 0.07 1.27 7.53 -2.39 -0.02 1.25 16 30 H 0.09 1.73 5.81 -2.38 -0.01 1.72 16 31 H 0.07 1.45 8.00 -2.39 -0.02 1.43 16 32 H 0.05 2.56 7.21 -2.39 -0.02 2.54 16 33 H 0.08 2.86 8.00 -2.39 -0.02 2.84 16 34 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.06 3.12 6.88 -2.38 -0.02 3.10 16 36 H 0.03 1.75 7.40 -2.39 -0.02 1.73 16 37 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.16 2.55 6.79 -2.91 -0.02 2.53 16 40 H 0.21 0.72 8.06 -2.91 -0.02 0.69 16 41 H 0.09 2.70 6.47 -2.38 -0.02 2.68 16 42 H 0.10 1.02 7.21 -2.39 -0.02 1.00 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.10 1.11 8.09 -2.39 -0.02 1.09 16 Total: -1.00 -82.33 373.56 3.24 -79.08 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.21 Total: 15.88 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 6.71 Total: 9.77 kcal Atomic # 7 Polarization: -122.90 SS G_CDS: -5.65 Total: -128.55 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.06 Total: -26.34 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -82.33 3.24 -79.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085817211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.192 kcal (2) G-P(sol) polarization free energy of solvation -82.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds