Wall clock time and date at job start Tue Mar 31 2020 11:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 119.99897 * 2 1 4 4 C 1.52999 * 109.47560 * 277.96145 * 3 2 1 5 5 H 1.08998 * 112.96435 * 50.03791 * 4 3 2 6 6 C 1.53944 * 113.77190 * 181.71956 * 4 3 2 7 7 C 1.53940 * 86.28988 * 137.90720 * 6 4 3 8 8 N 1.47579 * 86.24340 * 336.33705 * 7 6 4 9 9 C 1.36934 * 134.49540 * 204.69075 * 8 7 6 10 10 H 1.08000 * 120.00227 * 187.27652 * 9 8 7 11 11 C 1.38815 * 119.99948 * 7.28482 * 9 8 7 12 12 N 1.31617 * 120.00098 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00011 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47130 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47265 * 119.99604 * 13 11 9 16 16 H 1.48495 * 109.47103 * 239.99568 * 13 11 9 17 17 C 1.34774 * 120.00264 * 180.02562 * 2 1 3 18 18 O 1.21695 * 120.00489 * 185.77428 * 17 2 1 19 19 C 1.46678 * 119.99632 * 5.76756 * 17 2 1 20 20 C 1.38052 * 126.20447 * 185.87851 * 19 17 2 21 21 C 1.39247 * 106.97975 * 179.84417 * 20 19 17 22 22 C 1.35966 * 108.03687 * 0.46324 * 21 20 19 23 23 N 1.35112 * 108.76475 * 359.66977 * 22 21 20 24 24 H 0.97000 * 125.68741 * 180.10570 * 23 22 21 25 25 C 1.51013 * 123.85289 * 179.58721 * 22 21 20 26 26 C 1.53321 * 108.41402 * 343.33325 * 25 22 21 27 27 C 1.53103 * 109.53367 * 50.15952 * 26 25 22 28 28 C 1.50832 * 127.70745 * 180.23634 * 21 20 19 29 29 H 1.09003 * 109.47321 * 95.91680 * 1 2 3 30 30 H 1.08997 * 109.47393 * 215.91445 * 1 2 3 31 31 H 1.09000 * 109.47265 * 335.92116 * 1 2 3 32 32 H 1.09004 * 109.47051 * 157.96307 * 3 2 1 33 33 H 1.09003 * 109.47059 * 37.96699 * 3 2 1 34 34 H 1.09001 * 113.73858 * 23.56289 * 6 4 3 35 35 H 1.08991 * 113.84133 * 252.26730 * 6 4 3 36 36 H 1.09002 * 113.77239 * 90.69769 * 7 6 4 37 37 H 1.09006 * 113.77350 * 221.97959 * 7 6 4 38 38 H 0.96995 * 120.00298 * 180.02562 * 12 11 9 39 39 H 1.08006 * 126.50758 * 359.95383 * 20 19 17 40 40 H 1.08997 * 109.67979 * 103.06746 * 25 22 21 41 41 H 1.09007 * 109.67978 * 223.60634 * 25 22 21 42 42 H 1.09000 * 109.46409 * 290.13943 * 26 25 22 43 43 H 1.09003 * 109.44879 * 170.17174 * 26 25 22 44 44 H 1.09001 * 109.47688 * 169.60365 * 27 26 25 45 45 H 1.09002 * 109.47699 * 49.59657 * 27 26 25 46 46 H 1.09000 * 109.68301 * 283.50068 * 28 21 20 47 47 H 1.08995 * 109.68530 * 44.02280 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.2795 1.8104 -1.4285 5 1 1.3129 1.8304 -1.9319 6 6 3.0691 3.1264 -1.5488 7 6 3.6942 2.5188 -2.8176 8 7 3.3617 1.2044 -2.2347 9 6 3.8574 -0.0636 -2.3814 10 1 3.3533 -0.8977 -1.9161 11 6 5.0080 -0.2769 -3.1281 12 7 5.6222 0.7395 -3.6955 13 14 5.6847 -2.0066 -3.3276 14 1 4.8171 -2.9649 -2.5967 15 1 5.7131 -2.3638 -4.7687 16 1 7.0619 -2.0661 -2.7756 17 6 2.1389 -1.1671 -0.0005 18 8 3.3512 -1.1699 0.1055 19 6 1.4110 -2.4341 -0.1287 20 6 1.9537 -3.6998 -0.0311 21 6 0.9107 -4.6045 -0.2120 22 6 -0.2298 -3.8952 -0.4239 23 7 0.0626 -2.5771 -0.3745 24 1 -0.5711 -1.8521 -0.4918 25 6 -1.5792 -4.5264 -0.6716 26 6 -1.3639 -5.9957 -1.0531 27 6 -0.4403 -6.6605 -0.0289 28 6 0.9822 -6.1109 -0.1914 29 1 -0.3634 -0.1059 -1.0222 30 1 -0.3634 -0.8323 0.6028 31 1 -0.3634 0.9382 0.4193 32 1 3.2041 1.1071 0.3856 33 1 1.6774 1.9885 0.6322 34 1 3.7830 3.2852 -0.7406 35 1 2.4448 3.9987 -1.7417 36 1 3.1441 2.7464 -3.7307 37 1 4.7651 2.7002 -2.9100 38 1 6.4260 0.5904 -4.2175 39 1 2.9900 -3.9421 0.1527 40 1 -2.1838 -4.4670 0.2333 41 1 -2.0840 -4.0061 -1.4856 42 1 -0.9090 -6.0512 -2.0421 43 1 -2.3238 -6.5119 -1.0654 44 1 -0.4342 -7.7384 -0.1908 45 1 -0.7998 -6.4463 0.9776 46 1 1.4101 -6.4710 -1.1270 47 1 1.6003 -6.4378 0.6447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085909737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:00 Heat of formation + Delta-G solvation = 81.324058 kcal Electronic energy + Delta-G solvation = -27797.900937 eV Core-core repulsion = 24176.800443 eV Total energy + Delta-G solvation = -3621.100493 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55897 -39.17796 -37.50917 -36.30878 -35.12096 -32.15882 -31.91975 -29.83517 -28.78169 -28.03779 -27.65993 -26.35032 -24.10239 -23.15308 -22.45166 -21.83622 -20.76933 -19.51756 -18.96742 -18.57093 -17.19431 -16.72651 -15.92369 -15.69002 -15.28633 -14.98722 -14.56489 -14.09976 -13.93171 -13.86174 -13.64194 -13.45133 -13.28050 -13.08472 -12.76585 -12.67296 -12.43876 -12.28807 -12.11083 -11.77547 -11.48048 -11.31643 -10.99352 -10.96882 -10.81197 -10.76334 -10.57941 -10.55100 -10.35524 -9.89534 -9.54943 -9.43623 -9.13013 -8.61196 -8.53117 -8.16391 -7.71697 -6.64070 -5.50698 -2.82383 1.79349 2.84572 3.15122 3.40776 3.57344 3.63480 3.71137 3.88172 4.58819 4.64674 4.71861 4.74448 4.81422 4.95219 5.11236 5.22096 5.23731 5.29753 5.37285 5.43403 5.46366 5.52948 5.58952 5.61945 5.70918 5.76985 5.81278 5.88359 5.91544 5.97591 6.04115 6.08537 6.22335 6.31346 6.39265 6.41763 6.45770 6.73491 6.78827 6.91507 7.03290 7.17816 7.39894 7.52819 7.58308 7.78789 7.86042 8.26376 8.73323 9.32786 9.98324 10.81417 11.65780 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014036 B = 0.004694 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.378540 B = 5963.656536 C = 7310.086774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.615 5.615 3 C 0.118 3.882 4 C 0.123 3.877 5 H 0.040 0.960 6 C -0.157 4.157 7 C 0.150 3.850 8 N -0.596 5.596 9 C -0.194 4.194 10 H 0.090 0.910 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.902 3.098 14 H -0.275 1.275 15 H -0.297 1.297 16 H -0.292 1.292 17 C 0.581 3.419 18 O -0.485 6.485 19 C -0.038 4.038 20 C -0.105 4.105 21 C -0.174 4.174 22 C 0.031 3.969 23 N -0.538 5.538 24 H 0.416 0.584 25 C -0.049 4.049 26 C -0.113 4.113 27 C -0.117 4.117 28 C -0.047 4.047 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.019 0.981 37 H 0.080 0.920 38 H 0.247 0.753 39 H 0.144 0.856 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.068 0.932 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.265 -7.096 9.156 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.350 5.350 3 C -0.006 4.006 4 C 0.014 3.986 5 H 0.057 0.943 6 C -0.196 4.196 7 C 0.025 3.975 8 N -0.322 5.322 9 C -0.322 4.322 10 H 0.107 0.893 11 C -0.208 4.208 12 N -0.579 5.579 13 Si 0.734 3.266 14 H -0.200 1.200 15 H -0.225 1.225 16 H -0.219 1.219 17 C 0.369 3.631 18 O -0.357 6.357 19 C -0.151 4.151 20 C -0.131 4.131 21 C -0.181 4.181 22 C -0.086 4.086 23 N -0.141 5.141 24 H 0.261 0.739 25 C -0.087 4.087 26 C -0.151 4.151 27 C -0.155 4.155 28 C -0.085 4.085 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.162 0.838 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.440 -7.177 9.096 20.938 hybrid contribution -0.044 -0.441 -0.526 0.688 sum -17.485 -7.618 8.570 20.909 Atomic orbital electron populations 1.21989 0.81939 1.03024 1.00813 1.47560 1.05432 1.06733 1.75245 1.21968 0.98113 0.82525 0.97950 1.22709 0.92992 0.91636 0.91221 0.94286 1.23768 0.99370 0.95066 1.01395 1.22301 1.00422 0.83679 0.91143 1.46095 1.34417 1.04540 1.47141 1.19374 1.04710 0.82834 1.25253 0.89263 1.24699 0.97812 0.97082 1.01236 1.69826 1.20693 1.28494 1.38882 0.86122 0.79053 0.84809 0.76633 1.19960 1.22525 1.21949 1.16945 0.86825 0.81593 0.77728 1.90942 1.12136 1.85767 1.46903 1.20616 0.82739 0.95612 1.16139 1.20984 0.99128 0.89705 1.03254 1.19214 0.92261 0.95232 1.11368 1.20403 0.97019 0.83223 1.08002 1.42797 1.08660 1.07259 1.55403 0.73891 1.20242 0.91219 0.95787 1.01499 1.21509 0.99798 0.93829 0.99925 1.21578 0.95242 0.99381 0.99281 1.20041 0.96507 0.90089 1.01825 0.92909 0.91670 0.90050 0.88508 0.91691 0.90662 0.93289 0.96327 0.90141 0.94288 0.83781 0.90613 0.90971 0.91334 0.91397 0.91755 0.91856 0.91339 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 8.82 59.84 0.53 1.30 16 2 N -0.62 -10.57 2.88 -183.13 -0.53 -11.10 16 3 C 0.12 2.12 5.43 -4.04 -0.02 2.10 16 4 C 0.12 2.50 4.53 -66.67 -0.30 2.20 16 5 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 6 C -0.16 -3.02 7.86 -25.80 -0.20 -3.22 16 7 C 0.15 3.68 7.70 -2.98 -0.02 3.65 16 8 N -0.60 -15.80 3.58 -169.65 -0.61 -16.41 16 9 C -0.19 -5.78 9.43 -15.06 -0.14 -5.92 16 10 H 0.09 2.68 4.41 -52.49 -0.23 2.45 16 11 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 12 N -0.93 -29.44 11.27 55.49 0.63 -28.81 16 13 Si 0.90 24.85 29.55 -169.99 -5.02 19.83 16 14 H -0.27 -7.51 7.11 56.52 0.40 -7.11 16 15 H -0.30 -8.11 7.11 56.52 0.40 -7.71 16 16 H -0.29 -8.07 7.11 56.52 0.40 -7.67 16 17 C 0.58 11.90 6.03 -12.85 -0.08 11.83 16 18 O -0.49 -12.14 13.86 5.19 0.07 -12.07 16 19 C -0.04 -0.69 6.66 -81.84 -0.55 -1.23 16 20 C -0.10 -1.86 10.63 -39.27 -0.42 -2.28 16 21 C -0.17 -2.54 5.91 -105.00 -0.62 -3.16 16 22 C 0.03 0.40 7.02 -81.81 -0.57 -0.18 16 23 N -0.54 -7.39 5.08 -5.50 -0.03 -7.42 16 24 H 0.42 4.55 4.86 -40.82 -0.20 4.35 16 25 C -0.05 -0.44 6.30 -27.56 -0.17 -0.61 16 26 C -0.11 -0.93 5.89 -26.51 -0.16 -1.09 16 27 C -0.12 -1.03 5.90 -26.49 -0.16 -1.18 16 28 C -0.05 -0.54 6.28 -27.63 -0.17 -0.71 16 29 H 0.05 0.59 7.54 -51.93 -0.39 0.20 16 30 H 0.07 0.65 5.55 -51.93 -0.29 0.37 16 31 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 32 H 0.10 2.09 7.14 -51.93 -0.37 1.71 16 33 H 0.06 0.91 7.99 -51.93 -0.41 0.50 16 34 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 2.21 6.85 -51.93 -0.36 1.85 16 38 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.14 2.66 8.06 -52.48 -0.42 2.23 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 42 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -37.18 363.65 -10.45 -47.63 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.29 Total: 1.90 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: -3.15 Total: 0.97 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: -0.54 Total: -63.74 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.07 Total: -12.07 kcal Atomic # 14 Polarization: 24.85 SS G_CDS: -5.02 Total: 19.83 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.18 -10.45 -47.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085909737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.956 kcal (2) G-P(sol) polarization free energy of solvation -37.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds