Wall clock time and date at job start Tue Mar 31 2020 11:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46501 * 119.99897 * 2 1 4 4 C 1.52999 * 109.47560 * 277.96145 * 3 2 1 5 5 H 1.08998 * 112.96435 * 50.03791 * 4 3 2 6 6 C 1.53944 * 113.77190 * 181.71956 * 4 3 2 7 7 C 1.53940 * 86.28988 * 137.90720 * 6 4 3 8 8 N 1.47579 * 86.24340 * 336.33705 * 7 6 4 9 9 C 1.36934 * 134.49540 * 204.69075 * 8 7 6 10 10 H 1.08000 * 120.00227 * 187.27652 * 9 8 7 11 11 C 1.38815 * 119.99948 * 7.28482 * 9 8 7 12 12 N 1.31617 * 120.00098 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00011 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47130 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47265 * 119.99604 * 13 11 9 16 16 H 1.48495 * 109.47103 * 239.99568 * 13 11 9 17 17 C 1.34774 * 120.00264 * 180.02562 * 2 1 3 18 18 O 1.21695 * 120.00489 * 185.77428 * 17 2 1 19 19 C 1.46678 * 119.99632 * 5.76756 * 17 2 1 20 20 C 1.38052 * 126.20447 * 185.87851 * 19 17 2 21 21 C 1.39247 * 106.97975 * 179.84417 * 20 19 17 22 22 C 1.35966 * 108.03687 * 0.46324 * 21 20 19 23 23 N 1.35112 * 108.76475 * 359.66977 * 22 21 20 24 24 H 0.97000 * 125.68741 * 180.10570 * 23 22 21 25 25 C 1.51013 * 123.85289 * 179.58721 * 22 21 20 26 26 C 1.53321 * 108.41402 * 343.33325 * 25 22 21 27 27 C 1.53103 * 109.53367 * 50.15952 * 26 25 22 28 28 C 1.50832 * 127.70745 * 180.23634 * 21 20 19 29 29 H 1.09003 * 109.47321 * 95.91680 * 1 2 3 30 30 H 1.08997 * 109.47393 * 215.91445 * 1 2 3 31 31 H 1.09000 * 109.47265 * 335.92116 * 1 2 3 32 32 H 1.09004 * 109.47051 * 157.96307 * 3 2 1 33 33 H 1.09003 * 109.47059 * 37.96699 * 3 2 1 34 34 H 1.09001 * 113.73858 * 23.56289 * 6 4 3 35 35 H 1.08991 * 113.84133 * 252.26730 * 6 4 3 36 36 H 1.09002 * 113.77239 * 90.69769 * 7 6 4 37 37 H 1.09006 * 113.77350 * 221.97959 * 7 6 4 38 38 H 0.96995 * 120.00298 * 180.02562 * 12 11 9 39 39 H 1.08006 * 126.50758 * 359.95383 * 20 19 17 40 40 H 1.08997 * 109.67979 * 103.06746 * 25 22 21 41 41 H 1.09007 * 109.67978 * 223.60634 * 25 22 21 42 42 H 1.09000 * 109.46409 * 290.13943 * 26 25 22 43 43 H 1.09003 * 109.44879 * 170.17174 * 26 25 22 44 44 H 1.09001 * 109.47688 * 169.60365 * 27 26 25 45 45 H 1.09002 * 109.47699 * 49.59657 * 27 26 25 46 46 H 1.09000 * 109.68301 * 283.50068 * 28 21 20 47 47 H 1.08995 * 109.68530 * 44.02280 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.2795 1.8104 -1.4285 5 1 1.3129 1.8304 -1.9319 6 6 3.0691 3.1264 -1.5488 7 6 3.6942 2.5188 -2.8176 8 7 3.3617 1.2044 -2.2347 9 6 3.8574 -0.0636 -2.3814 10 1 3.3533 -0.8977 -1.9161 11 6 5.0080 -0.2769 -3.1281 12 7 5.6222 0.7395 -3.6955 13 14 5.6847 -2.0066 -3.3276 14 1 4.8171 -2.9649 -2.5967 15 1 5.7131 -2.3638 -4.7687 16 1 7.0619 -2.0661 -2.7756 17 6 2.1389 -1.1671 -0.0005 18 8 3.3512 -1.1699 0.1055 19 6 1.4110 -2.4341 -0.1287 20 6 1.9537 -3.6998 -0.0311 21 6 0.9107 -4.6045 -0.2120 22 6 -0.2298 -3.8952 -0.4239 23 7 0.0626 -2.5771 -0.3745 24 1 -0.5711 -1.8521 -0.4918 25 6 -1.5792 -4.5264 -0.6716 26 6 -1.3639 -5.9957 -1.0531 27 6 -0.4403 -6.6605 -0.0289 28 6 0.9822 -6.1109 -0.1914 29 1 -0.3634 -0.1059 -1.0222 30 1 -0.3634 -0.8323 0.6028 31 1 -0.3634 0.9382 0.4193 32 1 3.2041 1.1071 0.3856 33 1 1.6774 1.9885 0.6322 34 1 3.7830 3.2852 -0.7406 35 1 2.4448 3.9987 -1.7417 36 1 3.1441 2.7464 -3.7307 37 1 4.7651 2.7002 -2.9100 38 1 6.4260 0.5904 -4.2175 39 1 2.9900 -3.9421 0.1527 40 1 -2.1838 -4.4670 0.2333 41 1 -2.0840 -4.0061 -1.4856 42 1 -0.9090 -6.0512 -2.0421 43 1 -2.3238 -6.5119 -1.0654 44 1 -0.4342 -7.7384 -0.1908 45 1 -0.7998 -6.4463 0.9776 46 1 1.4101 -6.4710 -1.1270 47 1 1.6003 -6.4378 0.6447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085909737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:59 Heat of formation + Delta-G solvation = 56.683585 kcal Electronic energy + Delta-G solvation = -27798.969428 eV Core-core repulsion = 24176.800443 eV Total energy + Delta-G solvation = -3622.168984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.73040 -40.65598 -39.23031 -37.24602 -36.51367 -34.16358 -33.16222 -31.03924 -29.91989 -29.75554 -29.17510 -27.56637 -25.29147 -25.23384 -23.78206 -22.78912 -21.98806 -20.83625 -20.78969 -19.57686 -18.79308 -18.38823 -17.19475 -17.17179 -16.66777 -16.55525 -15.93516 -15.75716 -15.32945 -15.10017 -14.72776 -14.71396 -14.49660 -14.42698 -14.14000 -13.93743 -13.51259 -13.44264 -13.26379 -13.19214 -13.01119 -12.97836 -12.67927 -12.61678 -12.41583 -12.32785 -11.80908 -11.66163 -11.53916 -11.44659 -11.34427 -11.30007 -10.98420 -10.72733 -9.85974 -9.59883 -8.87941 -8.75681 -7.82186 -5.11059 0.48485 1.30983 1.35082 1.47380 1.67212 1.91379 2.22541 2.44426 2.49072 3.34916 3.41785 3.68966 3.77867 3.96486 3.98497 4.03629 4.08666 4.18116 4.23487 4.33733 4.40066 4.43893 4.50000 4.57086 4.63477 4.70688 4.71436 4.73975 4.74219 4.91452 4.96302 5.06360 5.07803 5.11900 5.14059 5.21712 5.32569 5.37831 5.40892 5.53161 5.56457 5.70777 5.79035 5.85745 5.94329 6.07061 6.41397 6.54456 7.05383 7.26468 7.72823 8.64215 9.34186 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014036 B = 0.004694 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.378540 B = 5963.656536 C = 7310.086774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.614 5.614 3 C 0.122 3.878 4 C 0.125 3.875 5 H 0.063 0.937 6 C -0.125 4.125 7 C 0.137 3.863 8 N -0.630 5.630 9 C -0.176 4.176 10 H 0.083 0.917 11 C -0.079 4.079 12 N -0.959 5.959 13 Si 0.949 3.051 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.297 1.297 17 C 0.573 3.427 18 O -0.553 6.553 19 C -0.070 4.070 20 C -0.133 4.133 21 C -0.194 4.194 22 C 0.055 3.945 23 N -0.521 5.521 24 H 0.430 0.570 25 C -0.049 4.049 26 C -0.113 4.113 27 C -0.112 4.112 28 C -0.051 4.051 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.053 0.947 33 H 0.120 0.880 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.018 0.982 37 H 0.041 0.959 38 H 0.240 0.760 39 H 0.117 0.883 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.056 0.944 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.364 -7.088 10.083 26.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.346 5.346 3 C -0.001 4.001 4 C 0.019 3.981 5 H 0.080 0.920 6 C -0.164 4.164 7 C 0.012 3.988 8 N -0.356 5.356 9 C -0.305 4.305 10 H 0.101 0.899 11 C -0.270 4.270 12 N -0.612 5.612 13 Si 0.781 3.219 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.225 1.225 17 C 0.363 3.637 18 O -0.430 6.430 19 C -0.183 4.183 20 C -0.160 4.160 21 C -0.200 4.200 22 C -0.064 4.064 23 N -0.126 5.126 24 H 0.279 0.721 25 C -0.086 4.086 26 C -0.151 4.151 27 C -0.150 4.150 28 C -0.088 4.088 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.138 0.862 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.036 0.964 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.135 0.865 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.641 -7.128 10.041 25.773 hybrid contribution 1.390 -0.457 -0.738 1.639 sum -21.252 -7.585 9.303 24.407 Atomic orbital electron populations 1.22355 0.78107 1.05884 1.02134 1.47663 1.07855 1.05368 1.73730 1.21839 0.97253 0.83995 0.97043 1.22986 0.92295 0.91196 0.91616 0.91990 1.23496 0.98923 0.96105 0.97871 1.22316 0.98643 0.84084 0.93743 1.46494 1.36568 1.03945 1.48564 1.19553 1.03887 0.84514 1.22583 0.89945 1.25302 0.99122 0.99570 1.02979 1.69976 1.21163 1.29421 1.40606 0.85373 0.78003 0.82068 0.76490 1.20589 1.21896 1.22504 1.17410 0.86394 0.83212 0.76730 1.90891 1.14951 1.86878 1.50311 1.20239 0.84623 0.94400 1.19017 1.21095 0.99040 0.91384 1.04518 1.19580 0.91881 0.96673 1.11830 1.21182 0.98476 0.82520 1.04247 1.42732 1.07174 1.08271 1.54403 0.72149 1.20510 0.88731 0.95851 1.03555 1.21563 1.01021 0.93591 0.98918 1.21573 0.93042 1.00391 0.99958 1.20142 0.98951 0.88279 1.01464 0.91934 0.90140 0.86240 0.92792 0.86207 0.90607 0.88432 0.96450 0.94031 0.95122 0.86464 0.87818 0.88992 0.92523 0.88324 0.89987 0.91150 0.92029 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.09 8.82 127.77 1.13 2.21 16 2 N -0.61 -20.15 2.88 -851.51 -2.45 -22.60 16 3 C 0.12 4.17 5.43 86.38 0.47 4.64 16 4 C 0.13 4.83 4.53 45.02 0.20 5.03 16 5 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 6 C -0.13 -4.49 7.86 31.25 0.25 -4.25 16 7 C 0.14 6.80 7.70 86.48 0.67 7.46 16 8 N -0.63 -33.76 3.58 -690.64 -2.47 -36.23 16 9 C -0.18 -10.86 9.43 84.03 0.79 -10.07 16 10 H 0.08 5.17 4.41 -2.91 -0.01 5.16 16 11 C -0.08 -5.09 5.50 84.86 0.47 -4.62 16 12 N -0.96 -63.59 11.27 21.65 0.24 -63.35 16 13 Si 0.95 53.91 29.55 68.60 2.03 55.94 16 14 H -0.28 -15.96 7.11 99.48 0.71 -15.25 16 15 H -0.29 -16.03 7.11 99.48 0.71 -15.32 16 16 H -0.30 -16.90 7.11 99.48 0.71 -16.20 16 17 C 0.57 24.10 6.03 86.45 0.52 24.62 16 18 O -0.55 -29.52 13.86 -4.33 -0.06 -29.58 16 19 C -0.07 -2.55 6.66 40.36 0.27 -2.28 16 20 C -0.13 -5.03 10.63 22.47 0.24 -4.79 16 21 C -0.19 -5.61 5.91 -20.11 -0.12 -5.73 16 22 C 0.06 1.28 7.02 41.63 0.29 1.58 16 23 N -0.52 -13.26 5.08 -171.31 -0.87 -14.13 16 24 H 0.43 7.92 4.86 -92.71 -0.45 7.47 16 25 C -0.05 -0.64 6.30 30.05 0.19 -0.45 16 26 C -0.11 -1.40 5.89 30.74 0.18 -1.22 16 27 C -0.11 -1.62 5.90 30.75 0.18 -1.44 16 28 C -0.05 -1.13 6.28 30.01 0.19 -0.94 16 29 H 0.06 1.12 7.54 -2.39 -0.02 1.10 16 30 H 0.08 1.30 5.55 -2.39 -0.01 1.29 16 31 H 0.12 1.42 7.92 -2.39 -0.02 1.40 16 32 H 0.05 2.35 7.14 -2.38 -0.02 2.34 16 33 H 0.12 2.79 7.99 -2.39 -0.02 2.77 16 34 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 35 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.04 2.37 6.85 -2.38 -0.02 2.35 16 38 H 0.24 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 42 H 0.06 0.86 8.11 -2.39 -0.02 0.84 16 43 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.07 0.94 8.11 -2.39 -0.02 0.92 16 46 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -89.94 363.65 2.86 -87.08 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.53 Total: 13.12 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.91 Total: 9.75 kcal Atomic # 7 Polarization: -130.76 SS G_CDS: -5.55 Total: -136.32 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.06 Total: -29.58 kcal Atomic # 14 Polarization: 53.91 SS G_CDS: 2.03 Total: 55.94 kcal Total: -89.94 2.86 -87.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085909737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.765 kcal (2) G-P(sol) polarization free energy of solvation -89.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds