Wall clock time and date at job start Tue Mar 31 2020 11:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00186 * 2 1 4 4 C 1.53003 * 109.46844 * 272.96044 * 3 2 1 5 5 H 1.08995 * 112.96431 * 65.56752 * 4 3 2 6 6 C 1.53946 * 113.76853 * 293.88783 * 4 3 2 7 7 C 1.53943 * 86.29178 * 222.09423 * 6 4 3 8 8 N 1.47581 * 113.76560 * 197.24577 * 4 3 2 9 9 C 1.36942 * 134.49528 * 318.93075 * 8 4 3 10 10 H 1.07995 * 119.99290 * 5.48993 * 9 8 4 11 11 C 1.38807 * 119.99911 * 185.49574 * 9 8 4 12 12 N 1.31623 * 120.00170 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99899 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47053 * 89.99596 * 13 11 9 15 15 H 1.48495 * 109.47174 * 209.99434 * 13 11 9 16 16 H 1.48501 * 109.47160 * 329.99841 * 13 11 9 17 17 C 1.34774 * 120.00029 * 179.97438 * 2 1 3 18 18 O 1.21695 * 120.00314 * 179.64199 * 17 2 1 19 19 C 1.46685 * 119.99916 * 359.63848 * 17 2 1 20 20 C 1.38052 * 126.20330 * 170.16366 * 19 17 2 21 21 C 1.39246 * 106.97770 * 180.02562 * 20 19 17 22 22 C 1.35967 * 108.03455 * 0.05772 * 21 20 19 23 23 N 1.35107 * 108.76831 * 359.89905 * 22 21 20 24 24 H 0.97001 * 125.68435 * 180.08147 * 23 22 21 25 25 C 1.51027 * 123.84542 * 179.90117 * 22 21 20 26 26 C 1.53323 * 108.41582 * 343.33423 * 25 22 21 27 27 C 1.53106 * 109.52776 * 50.16719 * 26 25 22 28 28 C 1.50839 * 127.70582 * 180.18150 * 21 20 19 29 29 H 1.09000 * 109.47781 * 263.84044 * 1 2 3 30 30 H 1.09002 * 109.47228 * 23.83755 * 1 2 3 31 31 H 1.09004 * 109.46980 * 143.83868 * 1 2 3 32 32 H 1.08999 * 109.46837 * 32.95282 * 3 2 1 33 33 H 1.09001 * 109.47360 * 152.95574 * 3 2 1 34 34 H 1.09010 * 113.73916 * 336.43832 * 6 4 3 35 35 H 1.08996 * 113.74060 * 107.63582 * 6 4 3 36 36 H 1.09000 * 113.77008 * 137.90643 * 7 6 4 37 37 H 1.08995 * 113.77035 * 269.19429 * 7 6 4 38 38 H 0.96996 * 119.99928 * 180.02562 * 12 11 9 39 39 H 1.07998 * 126.51433 * 359.97438 * 20 19 17 40 40 H 1.08994 * 109.67845 * 223.60115 * 25 22 21 41 41 H 1.09004 * 109.67685 * 103.06335 * 25 22 21 42 42 H 1.09005 * 109.45764 * 290.15763 * 26 25 22 43 43 H 1.08997 * 109.45285 * 170.18578 * 26 25 22 44 44 H 1.09008 * 109.47121 * 49.59054 * 27 26 25 45 45 H 1.08993 * 109.47498 * 169.59449 * 27 26 25 46 46 H 1.09003 * 109.68863 * 43.67593 * 28 21 20 47 47 H 1.09000 * 109.68101 * 283.12896 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3880 1.7476 -1.4406 5 1 1.4488 2.0016 -1.9320 6 6 3.3018 0.8376 -2.2813 7 6 3.9184 2.1355 -2.8337 8 7 3.4357 2.7759 -1.5920 9 6 3.8095 3.8785 -0.8710 10 1 3.3364 4.0898 0.0765 11 6 4.7964 4.7244 -1.3581 12 7 5.3732 4.4664 -2.5128 13 14 5.3059 6.2288 -0.3750 14 1 6.4163 5.8677 0.5426 15 1 5.7578 7.2966 -1.3027 16 1 4.1487 6.7179 0.4168 17 6 2.1388 -1.1672 0.0005 18 8 3.3558 -1.1672 -0.0061 19 6 1.4054 -2.4375 0.0091 20 6 1.9472 -3.6931 -0.1796 21 6 0.8989 -4.6055 -0.0929 22 6 -0.2459 -3.9104 0.1415 23 7 0.0506 -2.5938 0.2066 24 1 -0.5844 -1.8780 0.3655 25 6 -1.6037 -4.5533 0.2961 26 6 -1.5297 -5.9807 -0.2587 27 6 -0.3231 -6.7032 0.3464 28 6 0.9690 -6.1065 -0.2250 29 1 -0.3635 -0.1103 1.0217 30 1 -0.3634 0.9400 -0.4153 31 1 -0.3633 -0.8297 -0.6064 32 1 1.6324 2.0145 0.5590 33 1 3.1719 1.1257 0.4673 34 1 3.9941 0.2412 -1.6868 35 1 2.7686 0.2501 -3.0287 36 1 5.0045 2.1041 -2.9196 37 1 3.4309 2.5040 -3.7362 38 1 6.0631 5.0573 -2.8530 39 1 2.9865 -3.9239 -0.3610 40 1 -2.3461 -3.9813 -0.2602 41 1 -1.8776 -4.5833 1.3508 42 1 -1.4245 -5.9438 -1.3431 43 1 -2.4420 -6.5183 -0.0004 44 1 -0.3319 -6.5807 1.4296 45 1 -0.3736 -7.7637 0.1003 46 1 1.8259 -6.4846 0.3325 47 1 1.0654 -6.3784 -1.2761 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085909738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:03 Heat of formation + Delta-G solvation = 53.564760 kcal Electronic energy + Delta-G solvation = -26810.408165 eV Core-core repulsion = 23188.103939 eV Total energy + Delta-G solvation = -3622.304227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.73729 -40.76700 -39.30399 -37.24029 -36.58494 -34.25561 -33.13962 -31.09683 -29.88797 -29.86077 -29.22584 -27.63132 -25.44818 -25.16458 -23.85897 -22.81195 -22.01087 -20.94028 -20.75671 -19.55758 -18.72001 -18.34496 -17.40734 -17.23747 -16.73677 -16.53440 -16.00120 -15.76289 -15.34819 -15.06701 -14.77497 -14.69276 -14.48979 -14.21290 -14.14653 -13.97357 -13.91383 -13.45532 -13.38041 -13.22285 -13.03597 -12.92260 -12.61167 -12.58565 -12.54661 -12.27750 -11.85314 -11.62847 -11.61919 -11.50519 -11.31487 -11.29908 -11.09082 -10.87390 -9.89370 -9.66003 -8.93589 -8.84559 -7.90686 -5.24146 0.45988 1.42976 1.46700 1.54322 1.69302 1.79542 2.16303 2.38155 2.48398 3.28561 3.38104 3.58452 3.81260 3.88728 3.97925 4.01901 4.12724 4.16407 4.21880 4.25019 4.38186 4.43764 4.47244 4.56288 4.65648 4.71309 4.73881 4.75353 4.77082 4.81244 4.98791 5.02320 5.04104 5.13005 5.16694 5.18295 5.26258 5.34733 5.41420 5.42771 5.51039 5.57306 5.70872 5.88730 5.91544 5.97351 6.34242 6.53774 6.89710 7.11347 7.60423 8.57312 9.27854 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033511 B = 0.002618 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.335524 B =10691.190379 C =10945.644214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.606 5.606 3 C 0.132 3.868 4 C 0.136 3.864 5 H 0.061 0.939 6 C -0.136 4.136 7 C 0.161 3.839 8 N -0.628 5.628 9 C -0.228 4.228 10 H 0.089 0.911 11 C -0.074 4.074 12 N -0.959 5.959 13 Si 0.980 3.020 14 H -0.289 1.289 15 H -0.295 1.295 16 H -0.262 1.262 17 C 0.580 3.420 18 O -0.571 6.571 19 C -0.071 4.071 20 C -0.119 4.119 21 C -0.193 4.193 22 C 0.058 3.942 23 N -0.524 5.524 24 H 0.431 0.569 25 C -0.052 4.052 26 C -0.112 4.112 27 C -0.117 4.117 28 C -0.049 4.049 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.029 0.971 37 H 0.022 0.978 38 H 0.247 0.753 39 H 0.129 0.871 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.869 -22.460 6.668 32.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.338 5.338 3 C 0.008 3.992 4 C 0.030 3.970 5 H 0.079 0.921 6 C -0.174 4.174 7 C 0.035 3.965 8 N -0.355 5.355 9 C -0.356 4.356 10 H 0.107 0.893 11 C -0.266 4.266 12 N -0.608 5.608 13 Si 0.808 3.192 14 H -0.216 1.216 15 H -0.222 1.222 16 H -0.187 1.187 17 C 0.371 3.629 18 O -0.450 6.450 19 C -0.184 4.184 20 C -0.147 4.147 21 C -0.198 4.198 22 C -0.062 4.062 23 N -0.129 5.129 24 H 0.280 0.720 25 C -0.090 4.090 26 C -0.150 4.150 27 C -0.154 4.154 28 C -0.087 4.087 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.040 0.960 38 H 0.056 0.944 39 H 0.147 0.853 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.189 -21.943 6.780 31.248 hybrid contribution 1.001 1.725 0.040 1.995 sum -20.188 -20.218 6.820 29.374 Atomic orbital electron populations 1.22485 0.77826 1.05472 1.03281 1.47681 1.08052 1.04942 1.73152 1.21433 0.96900 0.83969 0.96924 1.22651 0.92444 0.87263 0.94684 0.92126 1.23554 0.98989 0.95867 0.99005 1.22055 0.97198 0.88459 0.88770 1.46326 1.34569 1.28736 1.25860 1.19433 1.16292 0.99334 1.00556 0.89280 1.25715 1.00273 1.02283 0.98360 1.70047 1.29446 1.39928 1.21350 0.85055 0.78300 0.78610 0.77238 1.21638 1.22160 1.18693 1.17497 0.86470 0.82905 0.76027 1.90827 1.14788 1.87091 1.52315 1.20001 0.84169 0.93980 1.20214 1.21130 0.99466 0.90696 1.03359 1.19590 0.91766 0.96710 1.11764 1.21145 0.98244 0.82710 1.04054 1.42835 1.06871 1.08516 1.54628 0.72006 1.20512 0.88945 0.96170 1.03351 1.21548 0.99105 0.93711 1.00613 1.21596 0.93416 1.00014 1.00395 1.20128 0.99023 0.88304 1.01234 0.89616 0.88120 0.89680 0.89213 0.92559 0.91261 0.91454 0.95269 0.96032 0.94395 0.85261 0.88633 0.88640 0.91779 0.88919 0.91816 0.90160 0.91524 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.84 8.89 127.77 1.14 1.97 16 2 N -0.61 -17.51 2.82 -851.49 -2.40 -19.91 16 3 C 0.13 4.80 5.36 86.38 0.46 5.27 16 4 C 0.14 5.72 4.57 45.09 0.21 5.92 16 5 H 0.06 2.34 8.14 -2.39 -0.02 2.33 16 6 C -0.14 -6.00 7.15 31.25 0.22 -5.77 16 7 C 0.16 8.50 7.39 86.43 0.64 9.14 16 8 N -0.63 -33.94 3.58 -690.85 -2.47 -36.41 16 9 C -0.23 -13.15 10.51 84.03 0.88 -12.27 16 10 H 0.09 4.79 7.83 -2.91 -0.02 4.77 16 11 C -0.07 -4.39 5.50 84.86 0.47 -3.93 16 12 N -0.96 -61.06 11.55 21.65 0.25 -60.81 16 13 Si 0.98 47.32 29.55 68.60 2.03 49.35 16 14 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 15 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 16 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 17 C 0.58 19.70 7.20 86.45 0.62 20.32 16 18 O -0.57 -25.04 14.56 -4.33 -0.06 -25.10 16 19 C -0.07 -1.95 6.66 40.37 0.27 -1.68 16 20 C -0.12 -3.31 10.64 22.47 0.24 -3.07 16 21 C -0.19 -4.04 5.91 -20.11 -0.12 -4.16 16 22 C 0.06 0.96 7.02 41.63 0.29 1.25 16 23 N -0.52 -9.42 5.04 -171.30 -0.86 -10.28 16 24 H 0.43 5.04 4.92 -92.71 -0.46 4.58 16 25 C -0.05 -0.42 6.30 30.06 0.19 -0.23 16 26 C -0.11 -0.83 5.89 30.74 0.18 -0.65 16 27 C -0.12 -1.14 5.90 30.75 0.18 -0.96 16 28 C -0.05 -0.76 6.28 30.01 0.19 -0.57 16 29 H 0.09 0.93 7.71 -2.39 -0.02 0.92 16 30 H 0.10 1.44 8.03 -2.39 -0.02 1.42 16 31 H 0.09 1.14 5.21 -2.38 -0.01 1.12 16 32 H 0.09 2.88 8.09 -2.39 -0.02 2.86 16 33 H 0.06 2.51 7.34 -2.39 -0.02 2.49 16 34 H 0.07 3.38 6.37 -2.38 -0.02 3.36 16 35 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.03 1.73 7.43 -2.39 -0.02 1.71 16 37 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 40 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.06 0.56 8.11 -2.38 -0.02 0.54 16 43 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.06 0.65 8.11 -2.38 -0.02 0.63 16 45 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -80.77 368.39 3.05 -77.72 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.51 Total: 14.86 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.06 Total: 10.58 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -5.49 Total: -127.41 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.06 Total: -25.10 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -80.77 3.05 -77.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085909738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.286 kcal (2) G-P(sol) polarization free energy of solvation -80.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds