Wall clock time and date at job start Tue Mar 31 2020 11:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99649 * 2 1 4 4 C 1.39707 * 120.00536 * 180.02562 * 2 1 3 5 5 C 1.39014 * 120.00770 * 180.02562 * 4 2 1 6 6 C 1.38204 * 120.22074 * 179.97438 * 5 4 2 7 7 C 1.38028 * 120.22861 * 359.76290 * 6 5 4 8 8 C 1.39584 * 120.00124 * 0.50947 * 7 6 5 9 9 C 1.47857 * 120.10786 * 179.74311 * 8 7 6 10 10 O 1.21550 * 119.99786 * 209.59628 * 9 8 7 11 11 N 1.34776 * 120.00035 * 29.59543 * 9 8 7 12 12 C 1.46501 * 120.00156 * 357.16888 * 11 9 8 13 13 C 1.46508 * 119.99747 * 177.16706 * 11 9 8 14 14 C 1.53004 * 109.46577 * 97.94459 * 13 11 9 15 15 H 1.08994 * 112.96937 * 53.85938 * 14 13 11 16 16 C 1.53946 * 113.76426 * 185.54378 * 14 13 11 17 17 C 1.53945 * 86.29060 * 137.90684 * 16 14 13 18 18 N 1.47574 * 86.11703 * 336.38873 * 17 16 14 19 19 C 1.36938 * 134.49261 * 204.64149 * 18 17 16 20 20 H 1.08005 * 119.99871 * 197.10833 * 19 18 17 21 21 C 1.38804 * 120.00297 * 17.10630 * 19 18 17 22 22 N 1.31619 * 119.99928 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00514 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46667 * 60.00071 * 23 21 19 25 25 H 1.48493 * 109.47547 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47195 * 300.00814 * 23 21 19 27 27 C 1.38643 * 119.99749 * 359.97438 * 4 2 1 28 28 H 1.09001 * 109.46853 * 240.00048 * 1 2 3 29 29 H 1.09001 * 109.47307 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46997 * 119.99611 * 1 2 3 31 31 H 1.09000 * 109.47181 * 270.00200 * 3 2 1 32 32 H 1.08995 * 109.47187 * 30.00643 * 3 2 1 33 33 H 1.09002 * 109.46783 * 150.00553 * 3 2 1 34 34 H 1.08001 * 119.89480 * 359.97438 * 5 4 2 35 35 H 1.08002 * 119.88702 * 180.02562 * 6 5 4 36 36 H 1.07997 * 120.00285 * 180.25372 * 7 6 5 37 37 H 1.08999 * 109.46958 * 264.63410 * 12 11 9 38 38 H 1.09001 * 109.46488 * 24.63716 * 12 11 9 39 39 H 1.08994 * 109.46944 * 144.63551 * 12 11 9 40 40 H 1.08990 * 109.46959 * 337.94482 * 13 11 9 41 41 H 1.08995 * 109.47077 * 217.93638 * 13 11 9 42 42 H 1.09002 * 113.73812 * 252.25019 * 16 14 13 43 43 H 1.08997 * 113.74827 * 23.44837 * 16 14 13 44 44 H 1.08999 * 113.76963 * 90.69453 * 17 16 14 45 45 H 1.09007 * 113.76764 * 221.97521 * 17 16 14 46 46 H 0.97005 * 120.00477 * 179.97438 * 22 21 19 47 47 H 1.08005 * 120.11601 * 0.04932 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1636 -1.2098 -0.0005 5 6 3.5538 -1.2099 0.0000 6 6 4.2494 -2.4041 0.0000 7 6 3.5686 -3.6048 0.0044 8 6 2.1728 -3.6158 -0.0019 9 6 1.4412 -4.9007 -0.0029 10 8 0.3474 -4.9767 -0.5276 11 7 1.9870 -5.9874 0.5779 12 6 3.3312 -5.9120 1.1556 13 6 1.2361 -7.2443 0.6316 14 6 1.6882 -8.1575 -0.5097 15 1 2.7663 -8.3170 -0.5253 16 6 0.8671 -9.4543 -0.6290 17 6 0.9010 -9.2176 -2.1498 18 7 1.1191 -7.7952 -1.8224 19 6 0.8868 -6.6138 -2.4746 20 1 1.3803 -5.7104 -2.1477 21 6 0.0171 -6.5772 -3.5558 22 7 -0.5847 -7.6780 -3.9539 23 14 -0.3004 -4.9654 -4.4451 24 1 0.9769 -4.4432 -4.9942 25 1 -1.2604 -5.1930 -5.5548 26 1 -0.8700 -3.9785 -3.4929 27 6 1.4705 -2.4105 -0.0005 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0277 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 2.3791 1.5835 -1.0277 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 4.0921 -0.2736 0.0004 35 1 5.3294 -2.3979 0.0008 36 1 4.1158 -4.5359 0.0085 37 1 4.0605 -6.2641 0.4260 38 1 3.5542 -4.8791 1.4230 39 1 3.3789 -6.5366 2.0475 40 1 0.1712 -7.0358 0.5301 41 1 1.4206 -7.7373 1.5860 42 1 1.4072 -10.3463 -0.3116 43 1 -0.1299 -9.3841 -0.1942 44 1 1.7478 -9.6884 -2.6490 45 1 -0.0491 -9.4153 -2.6464 46 1 -1.1927 -7.6524 -4.7093 47 1 0.3904 -2.4128 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085944629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:06 Heat of formation + Delta-G solvation = 99.548569 kcal Electronic energy + Delta-G solvation = -27745.488941 eV Core-core repulsion = 24125.178722 eV Total energy + Delta-G solvation = -3620.310219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.16044 -38.77824 -37.44167 -36.03015 -34.86667 -31.91145 -31.19400 -30.32213 -28.48299 -27.94768 -27.57389 -26.28898 -24.70840 -23.35766 -23.09141 -21.62660 -21.09431 -19.10859 -18.87062 -17.28257 -16.71634 -16.33507 -15.90033 -15.38674 -15.20641 -15.11560 -14.93929 -14.47354 -13.97013 -13.68456 -13.60663 -13.29594 -13.23925 -12.81492 -12.70378 -12.58929 -12.33052 -12.27225 -12.20897 -11.96924 -11.42935 -11.28977 -11.02178 -10.88918 -10.83234 -10.64244 -10.46555 -10.38226 -9.80270 -9.72324 -9.51220 -9.28204 -9.05450 -8.70462 -8.36873 -7.92862 -7.27067 -6.49699 -5.46641 -2.80203 1.24648 1.67247 3.03867 3.41479 3.59226 3.60334 3.62316 3.71020 4.14844 4.70172 4.78731 4.87225 4.96896 5.11483 5.12896 5.22346 5.25912 5.38324 5.48513 5.50069 5.55056 5.61352 5.64371 5.69947 5.70676 5.78821 5.80960 5.89883 5.92756 6.03410 6.10005 6.13006 6.29842 6.46942 6.53398 6.54659 6.65566 6.81956 6.83615 6.88746 7.16473 7.19851 7.43985 7.46285 7.70631 7.87867 8.02063 8.33100 8.93540 9.35161 10.03125 10.89173 11.68659 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.004916 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.580688 B = 5693.889549 C = 7041.812105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.641 5.641 3 C 0.096 3.904 4 C 0.203 3.797 5 C -0.185 4.185 6 C -0.084 4.084 7 C -0.163 4.163 8 C -0.069 4.069 9 C 0.537 3.463 10 O -0.478 6.478 11 N -0.607 5.607 12 C 0.064 3.936 13 C 0.120 3.880 14 C 0.123 3.877 15 H 0.041 0.959 16 C -0.154 4.154 17 C 0.139 3.861 18 N -0.593 5.593 19 C -0.181 4.181 20 H 0.078 0.922 21 C -0.007 4.007 22 N -0.926 5.926 23 Si 0.901 3.099 24 H -0.291 1.291 25 H -0.295 1.295 26 H -0.280 1.280 27 C -0.141 4.141 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.016 0.984 45 H 0.085 0.915 46 H 0.248 0.752 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.113 11.797 13.692 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.354 5.354 3 C -0.047 4.047 4 C 0.102 3.898 5 C -0.207 4.207 6 C -0.102 4.102 7 C -0.183 4.183 8 C -0.073 4.073 9 C 0.324 3.676 10 O -0.351 6.351 11 N -0.341 5.341 12 C -0.079 4.079 13 C -0.004 4.004 14 C 0.015 3.985 15 H 0.058 0.942 16 C -0.193 4.193 17 C 0.014 3.986 18 N -0.319 5.319 19 C -0.309 4.309 20 H 0.096 0.904 21 C -0.202 4.202 22 N -0.575 5.575 23 Si 0.732 3.268 24 H -0.219 1.219 25 H -0.221 1.221 26 H -0.206 1.206 27 C -0.164 4.164 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.159 0.841 37 H 0.072 0.928 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.109 0.891 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.034 0.966 45 H 0.104 0.896 46 H 0.057 0.943 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 8.222 12.144 13.149 19.697 hybrid contribution 0.048 0.890 -0.714 1.142 sum 8.270 13.034 12.435 19.822 Atomic orbital electron populations 1.21622 0.79341 1.02132 1.01775 1.46263 1.05007 1.02930 1.81228 1.21615 0.97163 0.84919 1.00995 1.17652 0.91135 0.85487 0.95486 1.20745 0.91917 0.98651 1.09421 1.20806 0.99388 0.91676 0.98361 1.21766 0.93405 0.99142 1.03975 1.19856 0.93728 0.93415 1.00296 1.18167 0.86514 0.83224 0.79713 1.90955 1.20114 1.83849 1.40150 1.47470 1.16821 1.10990 1.58819 1.22400 0.84419 1.03314 0.97802 1.21867 0.98029 0.83031 0.97442 1.22688 0.95615 0.92212 0.88023 0.94191 1.23729 0.99635 0.95520 1.00421 1.22441 1.00144 0.84656 0.91376 1.45866 1.71201 1.01599 1.13224 1.18992 1.18215 0.85104 1.08541 0.90414 1.24750 0.98657 0.96484 1.00354 1.69788 1.33234 1.25571 1.28867 0.86335 0.77376 0.84329 0.78729 1.21855 1.22132 1.20623 1.20683 1.00197 0.89700 1.05790 0.92724 0.91046 0.92416 0.93606 0.91744 0.91445 0.86134 0.85870 0.84112 0.92797 0.89274 0.92151 0.89087 0.91967 0.93503 0.90743 0.96597 0.89644 0.94254 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.02 9.40 59.85 0.56 1.58 16 2 N -0.64 -7.69 3.41 -187.59 -0.64 -8.33 16 3 C 0.10 0.81 10.16 59.85 0.61 1.42 16 4 C 0.20 2.91 6.55 -83.83 -0.55 2.36 16 5 C -0.18 -2.31 9.20 -39.31 -0.36 -2.67 16 6 C -0.08 -1.03 10.02 -39.67 -0.40 -1.43 16 7 C -0.16 -2.37 7.45 -39.16 -0.29 -2.66 16 8 C -0.07 -1.23 5.51 -104.99 -0.58 -1.80 16 9 C 0.54 11.17 5.80 -12.32 -0.07 11.09 16 10 O -0.48 -12.23 13.11 5.32 0.07 -12.16 16 11 N -0.61 -10.91 2.88 -182.69 -0.53 -11.43 16 12 C 0.06 0.82 8.80 59.85 0.53 1.35 16 13 C 0.12 2.25 5.39 -4.04 -0.02 2.22 16 14 C 0.12 2.57 4.52 -66.86 -0.30 2.27 16 15 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 16 C -0.15 -3.05 7.86 -25.81 -0.20 -3.25 16 17 C 0.14 3.44 7.97 -2.98 -0.02 3.42 16 18 N -0.59 -15.87 3.54 -170.77 -0.60 -16.48 16 19 C -0.18 -5.39 8.36 -15.06 -0.13 -5.52 16 20 H 0.08 2.35 4.98 -52.48 -0.26 2.09 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.93 -29.41 11.28 55.49 0.63 -28.79 16 23 Si 0.90 25.00 29.55 -169.99 -5.02 19.98 16 24 H -0.29 -7.96 7.11 56.52 0.40 -7.56 16 25 H -0.30 -8.10 7.11 56.52 0.40 -7.69 16 26 H -0.28 -7.85 7.11 56.52 0.40 -7.45 16 27 C -0.14 -2.39 8.86 -38.96 -0.35 -2.73 16 28 H 0.05 0.58 7.95 -51.93 -0.41 0.17 16 29 H 0.07 0.57 7.79 -51.93 -0.40 0.17 16 30 H 0.06 0.71 7.95 -51.93 -0.41 0.30 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 33 H 0.07 0.50 6.19 -51.93 -0.32 0.18 16 34 H 0.12 1.19 6.12 -52.49 -0.32 0.87 16 35 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.14 1.86 4.62 -52.49 -0.24 1.62 16 37 H 0.05 0.68 7.44 -51.93 -0.39 0.30 16 38 H 0.09 1.05 4.65 -51.93 -0.24 0.81 16 39 H 0.06 0.64 8.04 -51.93 -0.42 0.22 16 40 H 0.09 2.01 7.23 -51.93 -0.38 1.64 16 41 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 2.37 6.60 -51.92 -0.34 2.03 16 46 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.13 2.30 6.59 -52.48 -0.35 1.96 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -37.20 365.58 -9.24 -46.44 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.98 Total: -0.05 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.67 Total: 5.32 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: -1.14 Total: -65.03 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.07 Total: -12.16 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.02 Total: 19.98 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.20 -9.24 -46.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085944629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.989 kcal (2) G-P(sol) polarization free energy of solvation -37.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds