Wall clock time and date at job start Tue Mar 31 2020 11:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99649 * 2 1 4 4 C 1.39707 * 120.00536 * 180.02562 * 2 1 3 5 5 C 1.39014 * 120.00770 * 180.02562 * 4 2 1 6 6 C 1.38204 * 120.22074 * 179.97438 * 5 4 2 7 7 C 1.38028 * 120.22861 * 359.76290 * 6 5 4 8 8 C 1.39584 * 120.00124 * 0.50947 * 7 6 5 9 9 C 1.47857 * 120.10786 * 179.74311 * 8 7 6 10 10 O 1.21550 * 119.99786 * 209.59628 * 9 8 7 11 11 N 1.34776 * 120.00035 * 29.59543 * 9 8 7 12 12 C 1.46501 * 120.00156 * 357.16888 * 11 9 8 13 13 C 1.46508 * 119.99747 * 177.16706 * 11 9 8 14 14 C 1.53004 * 109.46577 * 97.94459 * 13 11 9 15 15 H 1.08994 * 112.96937 * 53.85938 * 14 13 11 16 16 C 1.53946 * 113.76426 * 185.54378 * 14 13 11 17 17 C 1.53945 * 86.29060 * 137.90684 * 16 14 13 18 18 N 1.47574 * 86.11703 * 336.38873 * 17 16 14 19 19 C 1.36938 * 134.49261 * 204.64149 * 18 17 16 20 20 H 1.08005 * 119.99871 * 197.10833 * 19 18 17 21 21 C 1.38804 * 120.00297 * 17.10630 * 19 18 17 22 22 N 1.31619 * 119.99928 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00514 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46667 * 60.00071 * 23 21 19 25 25 H 1.48493 * 109.47547 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47195 * 300.00814 * 23 21 19 27 27 C 1.38643 * 119.99749 * 359.97438 * 4 2 1 28 28 H 1.09001 * 109.46853 * 240.00048 * 1 2 3 29 29 H 1.09001 * 109.47307 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.46997 * 119.99611 * 1 2 3 31 31 H 1.09000 * 109.47181 * 270.00200 * 3 2 1 32 32 H 1.08995 * 109.47187 * 30.00643 * 3 2 1 33 33 H 1.09002 * 109.46783 * 150.00553 * 3 2 1 34 34 H 1.08001 * 119.89480 * 359.97438 * 5 4 2 35 35 H 1.08002 * 119.88702 * 180.02562 * 6 5 4 36 36 H 1.07997 * 120.00285 * 180.25372 * 7 6 5 37 37 H 1.08999 * 109.46958 * 264.63410 * 12 11 9 38 38 H 1.09001 * 109.46488 * 24.63716 * 12 11 9 39 39 H 1.08994 * 109.46944 * 144.63551 * 12 11 9 40 40 H 1.08990 * 109.46959 * 337.94482 * 13 11 9 41 41 H 1.08995 * 109.47077 * 217.93638 * 13 11 9 42 42 H 1.09002 * 113.73812 * 252.25019 * 16 14 13 43 43 H 1.08997 * 113.74827 * 23.44837 * 16 14 13 44 44 H 1.08999 * 113.76963 * 90.69453 * 17 16 14 45 45 H 1.09007 * 113.76764 * 221.97521 * 17 16 14 46 46 H 0.97005 * 120.00477 * 179.97438 * 22 21 19 47 47 H 1.08005 * 120.11601 * 0.04932 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1636 -1.2098 -0.0005 5 6 3.5538 -1.2099 0.0000 6 6 4.2494 -2.4041 0.0000 7 6 3.5686 -3.6048 0.0044 8 6 2.1728 -3.6158 -0.0019 9 6 1.4412 -4.9007 -0.0029 10 8 0.3474 -4.9767 -0.5276 11 7 1.9870 -5.9874 0.5779 12 6 3.3312 -5.9120 1.1556 13 6 1.2361 -7.2443 0.6316 14 6 1.6882 -8.1575 -0.5097 15 1 2.7663 -8.3170 -0.5253 16 6 0.8671 -9.4543 -0.6290 17 6 0.9010 -9.2176 -2.1498 18 7 1.1191 -7.7952 -1.8224 19 6 0.8868 -6.6138 -2.4746 20 1 1.3803 -5.7104 -2.1477 21 6 0.0171 -6.5772 -3.5558 22 7 -0.5847 -7.6780 -3.9539 23 14 -0.3004 -4.9654 -4.4451 24 1 0.9769 -4.4432 -4.9942 25 1 -1.2604 -5.1930 -5.5548 26 1 -0.8700 -3.9785 -3.4929 27 6 1.4705 -2.4105 -0.0005 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3634 1.0277 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 2.3791 1.5835 -1.0277 32 1 1.6084 2.0284 0.5139 33 1 3.1499 1.1384 0.5138 34 1 4.0921 -0.2736 0.0004 35 1 5.3294 -2.3979 0.0008 36 1 4.1158 -4.5359 0.0085 37 1 4.0605 -6.2641 0.4260 38 1 3.5542 -4.8791 1.4230 39 1 3.3789 -6.5366 2.0475 40 1 0.1712 -7.0358 0.5301 41 1 1.4206 -7.7373 1.5860 42 1 1.4072 -10.3463 -0.3116 43 1 -0.1299 -9.3841 -0.1942 44 1 1.7478 -9.6884 -2.6490 45 1 -0.0491 -9.4153 -2.6464 46 1 -1.1927 -7.6524 -4.7093 47 1 0.3904 -2.4128 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085944629.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:05 Heat of formation + Delta-G solvation = 74.518217 kcal Electronic energy + Delta-G solvation = -27746.574339 eV Core-core repulsion = 24125.178722 eV Total energy + Delta-G solvation = -3621.395617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47355 -40.10695 -39.13261 -37.13783 -36.31118 -34.11619 -32.35632 -31.42832 -29.85504 -29.50671 -28.97496 -27.58127 -25.64932 -25.19383 -24.81343 -23.04091 -22.14433 -20.76898 -20.40948 -18.78423 -18.40836 -17.58027 -17.16109 -16.87194 -16.49327 -16.41723 -16.21541 -15.97590 -15.72132 -15.23497 -14.95285 -14.65449 -14.48049 -14.29220 -13.95301 -13.57008 -13.53844 -13.42444 -13.19429 -13.13177 -13.05551 -12.94895 -12.88889 -12.61972 -12.38651 -12.38488 -12.05851 -11.90869 -11.67819 -11.40596 -11.31873 -10.86254 -10.64793 -10.46137 -9.89499 -9.44061 -8.61790 -8.26014 -7.77573 -5.09281 0.06180 0.59408 1.29606 1.35789 1.45178 2.03340 2.09206 2.31533 2.52056 2.94001 3.41403 3.46054 3.69028 3.97497 4.03349 4.09796 4.14172 4.24657 4.32805 4.35681 4.41754 4.44172 4.53577 4.53859 4.59911 4.73023 4.73223 4.74142 4.79546 4.81635 4.88682 4.95183 4.96617 4.96954 5.09851 5.16597 5.24525 5.44976 5.45995 5.54564 5.67502 5.75988 5.83763 5.89567 6.15598 6.28244 6.47826 6.58997 7.08067 7.43814 7.77368 8.70766 9.37482 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013422 B = 0.004916 C = 0.003975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.580688 B = 5693.889549 C = 7041.812105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.646 5.646 3 C 0.090 3.910 4 C 0.197 3.803 5 C -0.176 4.176 6 C -0.072 4.072 7 C -0.165 4.165 8 C -0.097 4.097 9 C 0.530 3.470 10 O -0.548 6.548 11 N -0.606 5.606 12 C 0.057 3.943 13 C 0.123 3.877 14 C 0.126 3.874 15 H 0.064 0.936 16 C -0.125 4.125 17 C 0.127 3.873 18 N -0.626 5.626 19 C -0.158 4.158 20 H 0.070 0.930 21 C -0.073 4.073 22 N -0.956 5.956 23 Si 0.947 3.053 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.295 1.295 27 C -0.171 4.171 28 H 0.048 0.952 29 H 0.104 0.896 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.155 0.845 35 H 0.166 0.834 36 H 0.156 0.844 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.070 0.930 44 H 0.021 0.979 45 H 0.047 0.953 46 H 0.239 0.761 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.037 13.024 16.089 24.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.358 5.358 3 C -0.052 4.052 4 C 0.095 3.905 5 C -0.199 4.199 6 C -0.090 4.090 7 C -0.185 4.185 8 C -0.101 4.101 9 C 0.319 3.681 10 O -0.426 6.426 11 N -0.338 5.338 12 C -0.084 4.084 13 C 0.000 4.000 14 C 0.019 3.981 15 H 0.082 0.918 16 C -0.164 4.164 17 C 0.002 3.998 18 N -0.352 5.352 19 C -0.288 4.288 20 H 0.088 0.912 21 C -0.264 4.264 22 N -0.609 5.609 23 Si 0.778 3.222 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.223 1.223 27 C -0.195 4.195 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.173 0.827 35 H 0.183 0.817 36 H 0.173 0.827 37 H 0.081 0.919 38 H 0.120 0.880 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.132 0.868 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.039 0.961 45 H 0.065 0.935 46 H 0.048 0.952 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.218 13.381 15.602 23.911 hybrid contribution -1.052 0.586 -1.300 1.772 sum 11.166 13.967 14.302 22.898 Atomic orbital electron populations 1.21647 0.79423 1.03689 1.00269 1.46557 1.05399 1.03477 1.80383 1.21870 0.97910 0.83593 1.01804 1.17844 0.92239 0.85390 0.95076 1.21191 0.90977 1.00388 1.07312 1.21279 1.01363 0.90459 0.95945 1.21956 0.91802 1.01000 1.03783 1.19777 0.95216 0.91932 1.03183 1.18840 0.85892 0.84875 0.78497 1.90910 1.23086 1.85139 1.43477 1.47641 1.18529 1.09870 1.57790 1.22702 0.81490 1.05174 0.99014 1.21743 0.95838 0.83472 0.98969 1.22931 0.96571 0.92689 0.85893 0.91819 1.23462 0.99962 0.96988 0.95956 1.22457 0.98387 0.84131 0.94830 1.46269 1.71717 1.01367 1.15886 1.19111 1.16262 0.86182 1.07242 0.91195 1.25329 1.00170 0.98595 1.02312 1.69946 1.34789 1.26566 1.29576 0.85587 0.77344 0.81661 0.77563 1.21084 1.21811 1.22293 1.20609 0.99170 0.91242 1.08440 0.93327 0.87789 0.95063 0.93206 0.89565 0.89917 0.82717 0.81664 0.82655 0.91865 0.88005 0.88815 0.93379 0.86838 0.88665 0.91149 0.96103 0.93481 0.95218 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.05 9.40 127.77 1.20 3.26 16 2 N -0.65 -14.73 3.41 -747.41 -2.55 -17.28 16 3 C 0.09 1.23 10.16 127.77 1.30 2.53 16 4 C 0.20 5.45 6.55 38.17 0.25 5.70 16 5 C -0.18 -3.80 9.20 22.45 0.21 -3.59 16 6 C -0.07 -1.49 10.02 22.21 0.22 -1.27 16 7 C -0.17 -4.44 7.45 22.54 0.17 -4.28 16 8 C -0.10 -3.50 5.51 -20.10 -0.11 -3.62 16 9 C 0.53 22.79 5.80 86.79 0.50 23.29 16 10 O -0.55 -30.09 13.11 -3.87 -0.05 -30.14 16 11 N -0.61 -21.15 2.88 -850.18 -2.45 -23.60 16 12 C 0.06 1.27 8.80 127.77 1.12 2.40 16 13 C 0.12 4.47 5.39 86.38 0.47 4.93 16 14 C 0.13 5.02 4.52 45.09 0.20 5.22 16 15 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 16 C -0.13 -4.70 7.86 31.25 0.25 -4.45 16 17 C 0.13 6.36 7.97 86.48 0.69 7.05 16 18 N -0.63 -34.00 3.54 -694.19 -2.46 -36.46 16 19 C -0.16 -9.80 8.36 84.03 0.70 -9.10 16 20 H 0.07 4.40 4.98 -2.91 -0.01 4.38 16 21 C -0.07 -4.74 5.50 84.86 0.47 -4.27 16 22 N -0.96 -63.84 11.28 21.65 0.24 -63.59 16 23 Si 0.95 54.19 29.55 68.60 2.03 56.22 16 24 H -0.28 -15.62 7.11 99.48 0.71 -14.91 16 25 H -0.29 -16.32 7.11 99.48 0.71 -15.61 16 26 H -0.30 -17.42 7.11 99.48 0.71 -16.71 16 27 C -0.17 -6.08 8.86 22.67 0.20 -5.88 16 28 H 0.05 1.11 7.95 -2.39 -0.02 1.09 16 29 H 0.10 1.55 7.79 -2.39 -0.02 1.53 16 30 H 0.03 0.84 7.95 -2.39 -0.02 0.82 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.82 7.92 -2.39 -0.02 0.80 16 33 H 0.08 0.88 6.19 -2.39 -0.01 0.87 16 34 H 0.16 2.25 6.12 -2.91 -0.02 2.23 16 35 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.16 3.60 4.62 -2.91 -0.01 3.59 16 37 H 0.06 1.34 7.44 -2.39 -0.02 1.32 16 38 H 0.10 2.06 4.65 -2.39 -0.01 2.05 16 39 H 0.09 1.50 8.04 -2.39 -0.02 1.48 16 40 H 0.05 2.18 7.23 -2.39 -0.02 2.16 16 41 H 0.11 2.94 8.05 -2.39 -0.02 2.92 16 42 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 43 H 0.07 2.71 8.10 -2.39 -0.02 2.69 16 44 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.05 2.72 6.60 -2.38 -0.02 2.70 16 46 H 0.24 15.65 8.31 -92.70 -0.77 14.88 16 47 H 0.10 4.02 6.59 -2.91 -0.02 4.00 16 Total: -1.00 -89.51 365.58 3.58 -85.93 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.97 Total: 10.98 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: 7.84 Total: 17.94 kcal Atomic # 7 Polarization: -133.72 SS G_CDS: -7.21 Total: -140.93 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.05 Total: -30.14 kcal Atomic # 14 Polarization: 54.19 SS G_CDS: 2.03 Total: 56.22 kcal Total: -89.51 3.58 -85.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085944629.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.444 kcal (2) G-P(sol) polarization free energy of solvation -89.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds