Wall clock time and date at job start Tue Mar 31 2020 11:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46494 * 119.99636 * 2 1 4 4 C 1.39045 * 119.99712 * 179.97438 * 2 1 3 5 5 C 1.39209 * 119.93323 * 359.97438 * 4 2 1 6 6 C 1.37613 * 120.06861 * 180.02562 * 5 4 2 7 7 C 1.39797 * 119.93211 * 0.02562 * 6 5 4 8 8 C 1.47519 * 120.06935 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00333 * 337.82674 * 8 7 6 10 10 N 1.34778 * 120.00037 * 157.56087 * 8 7 6 11 11 C 1.46507 * 119.99752 * 355.52096 * 10 8 7 12 12 C 1.46500 * 120.00419 * 175.51949 * 10 8 7 13 13 C 1.53002 * 109.46728 * 84.68147 * 12 10 8 14 14 H 1.09004 * 112.96658 * 291.83586 * 13 12 10 15 15 C 1.53939 * 113.77089 * 63.51622 * 13 12 10 16 16 C 1.53948 * 86.29152 * 137.90815 * 15 13 12 17 17 N 1.47575 * 113.76926 * 160.16026 * 13 12 10 18 18 C 1.36946 * 134.49351 * 41.05955 * 17 13 12 19 19 H 1.07994 * 119.99597 * 4.22677 * 18 17 13 20 20 C 1.38810 * 119.99889 * 184.21569 * 18 17 13 21 21 N 1.31620 * 120.00215 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99638 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46707 * 90.00719 * 22 20 18 24 24 H 1.48500 * 109.47244 * 210.00353 * 22 20 18 25 25 H 1.48493 * 109.47567 * 330.00867 * 22 20 18 26 26 C 1.39800 * 119.85736 * 0.27336 * 7 6 5 27 27 C 1.37604 * 119.93007 * 359.47267 * 26 7 6 28 28 H 1.09004 * 109.47528 * 239.99629 * 1 2 3 29 29 H 1.09000 * 109.47678 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47476 * 120.00076 * 1 2 3 31 31 H 1.09003 * 109.47150 * 269.99794 * 3 2 1 32 32 H 1.08999 * 109.47636 * 30.00074 * 3 2 1 33 33 H 1.09003 * 109.46932 * 149.99673 * 3 2 1 34 34 H 1.07998 * 119.97287 * 0.02685 * 5 4 2 35 35 H 1.07997 * 120.04008 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47294 * 95.97881 * 11 10 8 37 37 H 1.09005 * 109.46529 * 215.97968 * 11 10 8 38 38 H 1.09005 * 109.47036 * 335.97449 * 11 10 8 39 39 H 1.08994 * 109.47129 * 204.68140 * 12 10 8 40 40 H 1.08998 * 109.46709 * 324.68546 * 12 10 8 41 41 H 1.09000 * 113.74137 * 252.25020 * 15 13 12 42 42 H 1.08997 * 113.74378 * 23.45470 * 15 13 12 43 43 H 1.08997 * 113.76951 * 90.69500 * 16 15 13 44 44 H 1.09004 * 113.76933 * 221.97934 * 16 15 13 45 45 H 0.97004 * 119.99649 * 179.97438 * 21 20 18 46 46 H 1.08005 * 120.03073 * 179.69703 * 26 7 6 47 47 H 1.08004 * 119.96238 * 180.23299 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1602 -1.2042 0.0005 5 6 1.4626 -2.4089 0.0016 6 6 2.1478 -3.6024 0.0027 7 6 3.5458 -3.6041 0.0032 8 6 4.2834 -4.8816 0.0038 9 8 3.7427 -5.8956 0.4012 10 7 5.5548 -4.9260 -0.4412 11 6 6.1717 -3.7280 -1.0164 12 6 6.3199 -6.1719 -0.3498 13 6 6.0118 -7.0498 -1.5644 14 1 4.9902 -7.4301 -1.5661 15 6 6.4449 -6.4289 -2.9048 16 6 6.9472 -7.8350 -3.2795 17 7 7.0318 -8.0840 -1.8250 18 6 7.7625 -8.9317 -1.0358 19 1 7.5862 -8.9644 0.0291 20 6 8.7296 -9.7489 -1.6048 21 7 8.9447 -9.7087 -2.9027 22 14 9.7268 -10.9047 -0.5281 23 1 9.0325 -12.2139 -0.4318 24 1 11.0721 -11.1006 -1.1256 25 1 9.8685 -10.3185 0.8288 26 6 4.2433 -2.3925 0.0085 27 6 3.5523 -1.2025 0.0021 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 2.3791 1.5834 -1.0277 32 1 1.6083 2.0284 0.5138 33 1 3.1498 1.1384 0.5139 34 1 0.3827 -2.4071 0.0016 35 1 1.6062 -4.5367 0.0039 36 1 6.7491 -3.2125 -0.2490 37 1 6.8312 -4.0164 -1.8350 38 1 5.3937 -3.0640 -1.3932 39 1 7.3854 -5.9432 -0.3278 40 1 6.0431 -6.7022 0.5614 41 1 5.6124 -6.0826 -3.5173 42 1 7.2389 -5.6884 -2.8092 43 1 6.2011 -8.4476 -3.7856 44 1 7.9127 -7.8363 -3.7854 45 1 9.6208 -10.2796 -3.3002 46 1 5.3233 -2.3906 0.0138 47 1 4.0907 -0.2662 0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085945667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:15 Heat of formation + Delta-G solvation = 89.894027 kcal Electronic energy + Delta-G solvation = -26408.850986 eV Core-core repulsion = 22788.122114 eV Total energy + Delta-G solvation = -3620.728871 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.44599 -39.10705 -37.68117 -36.23538 -35.17728 -32.11461 -31.45961 -30.65246 -28.73223 -28.11364 -27.76099 -26.66409 -25.18640 -23.28388 -22.73612 -22.28567 -21.23592 -19.60762 -18.89217 -17.55346 -17.06161 -16.50105 -16.28062 -15.53142 -15.46558 -15.33929 -14.84587 -14.72042 -14.16101 -13.94887 -13.78507 -13.62766 -13.53219 -13.08728 -12.91274 -12.69175 -12.60045 -12.46034 -12.32466 -12.20709 -12.11104 -11.65425 -11.33418 -10.98959 -10.80405 -10.73232 -10.59036 -10.40157 -10.03281 -9.75697 -9.66931 -9.55809 -9.38077 -9.05806 -8.69101 -8.23529 -7.56988 -6.76859 -5.67033 -2.99749 1.06425 1.31946 2.73811 3.05703 3.29855 3.45044 3.50251 3.51648 3.91344 4.53528 4.54041 4.55753 4.75388 4.75982 4.84332 4.92420 5.11517 5.15227 5.24252 5.26878 5.28869 5.36962 5.37591 5.42859 5.49094 5.54403 5.66652 5.78257 5.88796 5.90381 6.01252 6.10193 6.15839 6.28819 6.38153 6.41717 6.54442 6.58552 6.77744 6.82247 6.86625 6.94536 7.14899 7.35270 7.55297 7.68278 7.74094 8.08512 8.52590 9.14154 9.80567 10.71457 11.49415 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032878 B = 0.002462 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.418696 B =11368.294540 C =11488.940866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.634 5.634 3 C 0.090 3.910 4 C 0.232 3.768 5 C -0.207 4.207 6 C -0.012 4.012 7 C -0.188 4.188 8 C 0.557 3.443 9 O -0.541 6.541 10 N -0.603 5.603 11 C 0.062 3.938 12 C 0.121 3.879 13 C 0.132 3.868 14 H 0.049 0.951 15 C -0.157 4.157 16 C 0.156 3.844 17 N -0.604 5.604 18 C -0.218 4.218 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.910 3.090 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C -0.057 4.057 27 C -0.211 4.211 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.022 0.978 44 H 0.076 0.924 45 H 0.252 0.748 46 H 0.149 0.851 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.862 25.694 3.804 29.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.345 5.345 3 C -0.053 4.053 4 C 0.129 3.871 5 C -0.230 4.230 6 C -0.031 4.031 7 C -0.193 4.193 8 C 0.347 3.653 9 O -0.420 6.420 10 N -0.335 5.335 11 C -0.081 4.081 12 C -0.002 4.002 13 C 0.024 3.976 14 H 0.066 0.934 15 C -0.196 4.196 16 C 0.031 3.969 17 N -0.330 5.330 18 C -0.345 4.345 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.570 5.570 22 Si 0.740 3.260 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.076 4.076 27 C -0.233 4.233 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.040 0.960 44 H 0.095 0.905 45 H 0.062 0.938 46 H 0.166 0.834 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.972 25.082 4.077 28.999 hybrid contribution 0.449 -0.702 0.476 0.959 sum -13.523 24.380 4.553 28.249 Atomic orbital electron populations 1.21645 0.79337 1.02466 1.01537 1.46267 1.05231 1.03391 1.79577 1.21712 0.97465 0.84725 1.01363 1.18008 0.91378 0.85631 0.92083 1.20559 0.99673 0.90702 1.12029 1.20986 0.92681 0.97868 0.91609 1.19710 0.94139 0.93000 1.12419 1.18254 0.81192 0.88242 0.77634 1.90776 1.67329 1.35684 1.48170 1.47675 1.12951 1.12071 1.60816 1.22509 0.99015 0.88035 0.98536 1.21757 0.95130 0.83303 1.00045 1.22521 0.93604 0.89019 0.92491 0.93364 1.23742 0.99362 0.99003 0.97446 1.22289 0.99075 0.88707 0.86826 1.46092 1.42635 1.41698 1.02598 1.19032 1.11036 1.14328 0.90143 0.90427 1.24762 0.99523 1.00329 0.95962 1.69828 1.35875 1.42148 1.09100 0.86150 0.79459 0.81002 0.79360 1.21724 1.21731 1.20641 1.21971 1.01236 0.91007 0.93401 1.20619 0.91853 0.98595 1.12219 0.92567 0.90867 0.92521 0.93177 0.91515 0.91048 0.85763 0.85009 0.92485 0.90724 0.89566 0.89833 0.90877 0.93470 0.90995 0.96004 0.90530 0.93813 0.83354 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.49 9.38 59.85 0.56 1.05 16 2 N -0.63 -4.67 3.39 -187.56 -0.64 -5.30 16 3 C 0.09 0.44 10.15 59.84 0.61 1.05 16 4 C 0.23 2.25 6.55 -83.86 -0.55 1.70 16 5 C -0.21 -2.17 9.28 -39.45 -0.37 -2.53 16 6 C -0.01 -0.15 9.58 -39.23 -0.38 -0.53 16 7 C -0.19 -2.56 5.56 -104.95 -0.58 -3.14 16 8 C 0.56 9.52 7.47 -12.48 -0.09 9.43 16 9 O -0.54 -11.40 16.27 5.29 0.09 -11.32 16 10 N -0.60 -9.57 2.75 -182.81 -0.50 -10.07 16 11 C 0.06 0.70 8.46 59.85 0.51 1.21 16 12 C 0.12 2.33 5.27 -4.04 -0.02 2.31 16 13 C 0.13 2.90 4.55 -66.87 -0.30 2.60 16 14 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 15 C -0.16 -3.12 7.16 -25.80 -0.18 -3.30 16 16 C 0.16 3.85 7.63 -2.85 -0.02 3.83 16 17 N -0.60 -16.06 3.58 -169.75 -0.61 -16.67 16 18 C -0.22 -6.27 10.51 -15.06 -0.16 -6.43 16 19 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 20 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 21 N -0.92 -27.95 11.33 55.49 0.63 -27.33 16 22 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C -0.06 -0.62 7.52 -39.23 -0.30 -0.91 16 27 C -0.21 -1.97 9.18 -39.45 -0.36 -2.34 16 28 H 0.06 0.29 7.93 -51.93 -0.41 -0.12 16 29 H 0.07 0.24 7.79 -51.93 -0.40 -0.16 16 30 H 0.06 0.30 7.93 -51.93 -0.41 -0.12 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.22 7.92 -51.93 -0.41 -0.19 16 33 H 0.07 0.33 6.17 -51.93 -0.32 0.01 16 34 H 0.12 1.06 6.70 -52.49 -0.35 0.71 16 35 H 0.13 1.72 7.80 -52.49 -0.41 1.31 16 36 H 0.06 0.53 7.21 -51.93 -0.37 0.15 16 37 H 0.07 0.86 6.30 -51.93 -0.33 0.54 16 38 H 0.09 0.86 4.92 -51.93 -0.26 0.60 16 39 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 40 H 0.07 1.54 7.66 -51.93 -0.40 1.14 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.32 6.71 -51.93 -0.35 0.98 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.08 2.04 7.00 -51.93 -0.36 1.68 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.15 1.34 4.21 -52.48 -0.22 1.12 16 47 H 0.13 0.89 6.11 -52.48 -0.32 0.57 16 LS Contribution 371.04 15.07 5.59 5.59 Total: -1.00 -35.41 371.04 -9.18 -44.60 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.98 Total: -0.87 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.74 Total: 3.62 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -1.12 Total: -59.37 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.41 -9.18 -44.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085945667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.491 kcal (2) G-P(sol) polarization free energy of solvation -35.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds