Wall clock time and date at job start Tue Mar 31 2020 11:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46494 * 119.99636 * 2 1 4 4 C 1.39045 * 119.99712 * 179.97438 * 2 1 3 5 5 C 1.39209 * 119.93323 * 359.97438 * 4 2 1 6 6 C 1.37613 * 120.06861 * 180.02562 * 5 4 2 7 7 C 1.39797 * 119.93211 * 0.02562 * 6 5 4 8 8 C 1.47519 * 120.06935 * 180.02562 * 7 6 5 9 9 O 1.21589 * 120.00333 * 337.82674 * 8 7 6 10 10 N 1.34778 * 120.00037 * 157.56087 * 8 7 6 11 11 C 1.46507 * 119.99752 * 355.52096 * 10 8 7 12 12 C 1.46500 * 120.00419 * 175.51949 * 10 8 7 13 13 C 1.53002 * 109.46728 * 84.68147 * 12 10 8 14 14 H 1.09004 * 112.96658 * 291.83586 * 13 12 10 15 15 C 1.53939 * 113.77089 * 63.51622 * 13 12 10 16 16 C 1.53948 * 86.29152 * 137.90815 * 15 13 12 17 17 N 1.47575 * 113.76926 * 160.16026 * 13 12 10 18 18 C 1.36946 * 134.49351 * 41.05955 * 17 13 12 19 19 H 1.07994 * 119.99597 * 4.22677 * 18 17 13 20 20 C 1.38810 * 119.99889 * 184.21569 * 18 17 13 21 21 N 1.31620 * 120.00215 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99638 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.46707 * 90.00719 * 22 20 18 24 24 H 1.48500 * 109.47244 * 210.00353 * 22 20 18 25 25 H 1.48493 * 109.47567 * 330.00867 * 22 20 18 26 26 C 1.39800 * 119.85736 * 0.27336 * 7 6 5 27 27 C 1.37604 * 119.93007 * 359.47267 * 26 7 6 28 28 H 1.09004 * 109.47528 * 239.99629 * 1 2 3 29 29 H 1.09000 * 109.47678 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47476 * 120.00076 * 1 2 3 31 31 H 1.09003 * 109.47150 * 269.99794 * 3 2 1 32 32 H 1.08999 * 109.47636 * 30.00074 * 3 2 1 33 33 H 1.09003 * 109.46932 * 149.99673 * 3 2 1 34 34 H 1.07998 * 119.97287 * 0.02685 * 5 4 2 35 35 H 1.07997 * 120.04008 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.47294 * 95.97881 * 11 10 8 37 37 H 1.09005 * 109.46529 * 215.97968 * 11 10 8 38 38 H 1.09005 * 109.47036 * 335.97449 * 11 10 8 39 39 H 1.08994 * 109.47129 * 204.68140 * 12 10 8 40 40 H 1.08998 * 109.46709 * 324.68546 * 12 10 8 41 41 H 1.09000 * 113.74137 * 252.25020 * 15 13 12 42 42 H 1.08997 * 113.74378 * 23.45470 * 15 13 12 43 43 H 1.08997 * 113.76951 * 90.69500 * 16 15 13 44 44 H 1.09004 * 113.76933 * 221.97934 * 16 15 13 45 45 H 0.97004 * 119.99649 * 179.97438 * 21 20 18 46 46 H 1.08005 * 120.03073 * 179.69703 * 26 7 6 47 47 H 1.08004 * 119.96238 * 180.23299 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1602 -1.2042 0.0005 5 6 1.4626 -2.4089 0.0016 6 6 2.1478 -3.6024 0.0027 7 6 3.5458 -3.6041 0.0032 8 6 4.2834 -4.8816 0.0038 9 8 3.7427 -5.8956 0.4012 10 7 5.5548 -4.9260 -0.4412 11 6 6.1717 -3.7280 -1.0164 12 6 6.3199 -6.1719 -0.3498 13 6 6.0118 -7.0498 -1.5644 14 1 4.9902 -7.4301 -1.5661 15 6 6.4449 -6.4289 -2.9048 16 6 6.9472 -7.8350 -3.2795 17 7 7.0318 -8.0840 -1.8250 18 6 7.7625 -8.9317 -1.0358 19 1 7.5862 -8.9644 0.0291 20 6 8.7296 -9.7489 -1.6048 21 7 8.9447 -9.7087 -2.9027 22 14 9.7268 -10.9047 -0.5281 23 1 9.0325 -12.2139 -0.4318 24 1 11.0721 -11.1006 -1.1256 25 1 9.8685 -10.3185 0.8288 26 6 4.2433 -2.3925 0.0085 27 6 3.5523 -1.2025 0.0021 28 1 -0.3634 -0.5139 0.8900 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 2.3791 1.5834 -1.0277 32 1 1.6083 2.0284 0.5138 33 1 3.1498 1.1384 0.5139 34 1 0.3827 -2.4071 0.0016 35 1 1.6062 -4.5367 0.0039 36 1 6.7491 -3.2125 -0.2490 37 1 6.8312 -4.0164 -1.8350 38 1 5.3937 -3.0640 -1.3932 39 1 7.3854 -5.9432 -0.3278 40 1 6.0431 -6.7022 0.5614 41 1 5.6124 -6.0826 -3.5173 42 1 7.2389 -5.6884 -2.8092 43 1 6.2011 -8.4476 -3.7856 44 1 7.9127 -7.8363 -3.7854 45 1 9.6208 -10.2796 -3.3002 46 1 5.3233 -2.3906 0.0138 47 1 4.0907 -0.2662 0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085945667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:14 Heat of formation + Delta-G solvation = 67.716386 kcal Electronic energy + Delta-G solvation = -26409.812680 eV Core-core repulsion = 22788.122114 eV Total energy + Delta-G solvation = -3621.690566 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52218 -40.18676 -39.33895 -37.04944 -36.47314 -34.23589 -32.33800 -31.56972 -29.86078 -29.64598 -28.91708 -27.73992 -26.04129 -25.31777 -24.16990 -23.16041 -22.17150 -21.05658 -20.48293 -18.76743 -18.29431 -17.86598 -17.39885 -16.98627 -16.62638 -16.25505 -15.96865 -15.91903 -15.63107 -15.30853 -15.09664 -14.70300 -14.49339 -14.14369 -13.94004 -13.82823 -13.55494 -13.44161 -13.32672 -13.27873 -13.16473 -12.94586 -12.83962 -12.61707 -12.50906 -12.28338 -12.21855 -11.79387 -11.58746 -11.54874 -11.33294 -10.90808 -10.83381 -10.65643 -9.87918 -9.62146 -8.89706 -8.24869 -7.88487 -5.23314 0.15085 0.52006 1.44228 1.46798 1.55338 1.90167 2.05889 2.21885 2.49646 2.98189 3.30477 3.43762 3.68866 3.85512 3.91151 4.00673 4.19860 4.22266 4.29077 4.31329 4.40666 4.48087 4.52852 4.55168 4.63930 4.64398 4.73443 4.78236 4.81772 4.88730 4.92343 4.95593 4.96575 5.03073 5.06314 5.11863 5.24078 5.27464 5.34838 5.46365 5.56629 5.59612 5.73201 5.80705 5.96062 6.30612 6.46930 6.51709 6.93461 7.25004 7.61596 8.58400 9.27541 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032878 B = 0.002462 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.418696 B =11368.294540 C =11488.940866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.633 5.633 3 C 0.082 3.918 4 C 0.236 3.764 5 C -0.212 4.212 6 C -0.026 4.026 7 C -0.215 4.215 8 C 0.551 3.449 9 O -0.598 6.598 10 N -0.600 5.600 11 C 0.054 3.946 12 C 0.138 3.862 13 C 0.131 3.869 14 H 0.022 0.978 15 C -0.121 4.121 16 C 0.148 3.852 17 N -0.629 5.629 18 C -0.231 4.231 19 H 0.076 0.924 20 C -0.066 4.066 21 N -0.952 5.952 22 Si 0.977 3.023 23 H -0.291 1.291 24 H -0.289 1.289 25 H -0.268 1.268 26 C -0.049 4.049 27 C -0.208 4.208 28 H 0.056 0.944 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.095 0.905 43 H 0.007 0.993 44 H 0.054 0.946 45 H 0.249 0.751 46 H 0.169 0.831 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.815 29.692 4.233 33.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.341 5.341 3 C -0.060 4.060 4 C 0.130 3.870 5 C -0.235 4.235 6 C -0.046 4.046 7 C -0.221 4.221 8 C 0.344 3.656 9 O -0.481 6.481 10 N -0.331 5.331 11 C -0.087 4.087 12 C 0.013 3.987 13 C 0.024 3.976 14 H 0.040 0.960 15 C -0.159 4.159 16 C 0.023 3.977 17 N -0.356 5.356 18 C -0.359 4.359 19 H 0.094 0.906 20 C -0.259 4.259 21 N -0.601 5.601 22 Si 0.805 3.195 23 H -0.219 1.219 24 H -0.215 1.215 25 H -0.192 1.192 26 C -0.067 4.067 27 C -0.230 4.230 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.156 0.844 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.124 0.876 39 H 0.108 0.892 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.113 0.887 43 H 0.025 0.975 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.186 0.814 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.946 29.174 4.504 32.648 hybrid contribution 0.273 -1.793 0.337 1.845 sum -13.674 27.381 4.841 30.986 Atomic orbital electron populations 1.21830 0.78246 1.04109 1.01546 1.46596 1.06227 1.03409 1.77848 1.21943 0.97910 0.83870 1.02274 1.18205 0.91930 0.86243 0.90662 1.20651 1.00418 0.90344 1.12042 1.20949 0.92729 0.98183 0.92775 1.19487 0.94201 0.92252 1.16127 1.18900 0.81281 0.88939 0.76520 1.90734 1.68622 1.37925 1.50771 1.47693 1.12607 1.12097 1.60716 1.22856 0.99789 0.86553 0.99471 1.21296 0.95651 0.84427 0.97307 1.22560 0.91289 0.88519 0.95280 0.96008 1.23495 1.00380 0.96603 0.95410 1.22281 0.97763 0.91791 0.85903 1.46501 1.43278 1.42343 1.03494 1.19347 1.11303 1.14731 0.90544 0.90621 1.25599 1.00842 1.02089 0.97331 1.70008 1.36472 1.42960 1.10622 0.85101 0.77608 0.78558 0.78211 1.21851 1.21515 1.19240 1.22114 1.02123 0.90133 0.92352 1.20925 0.91816 0.99209 1.11079 0.92565 0.88489 0.92532 0.92361 0.89613 0.90467 0.84377 0.86899 0.89495 0.90404 0.87619 0.89198 0.93634 0.90721 0.88689 0.97473 0.92773 0.94232 0.81445 0.82647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 9.38 127.77 1.20 1.83 16 2 N -0.63 -7.06 3.39 -747.32 -2.53 -9.60 16 3 C 0.08 0.45 10.15 127.77 1.30 1.75 16 4 C 0.24 3.90 6.55 38.47 0.25 4.15 16 5 C -0.21 -4.19 9.28 22.36 0.21 -3.99 16 6 C -0.03 -0.69 9.58 22.50 0.22 -0.47 16 7 C -0.22 -5.80 5.56 -20.08 -0.11 -5.91 16 8 C 0.55 19.28 7.47 86.69 0.65 19.93 16 9 O -0.60 -26.84 16.27 -4.00 -0.07 -26.90 16 10 N -0.60 -18.70 2.75 -850.54 -2.34 -21.05 16 11 C 0.05 1.07 8.46 127.77 1.08 2.15 16 12 C 0.14 5.39 5.27 86.38 0.46 5.85 16 13 C 0.13 5.90 4.55 45.09 0.21 6.11 16 14 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 15 C -0.12 -4.69 7.16 31.25 0.22 -4.47 16 16 C 0.15 7.46 7.63 86.44 0.66 8.12 16 17 N -0.63 -34.39 3.58 -690.98 -2.48 -36.87 16 18 C -0.23 -13.63 10.51 84.03 0.88 -12.75 16 19 H 0.08 4.37 7.83 -2.91 -0.02 4.34 16 20 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 21 N -0.95 -59.04 11.33 21.65 0.25 -58.79 16 22 Si 0.98 47.54 29.55 68.60 2.03 49.56 16 23 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 C -0.05 -0.91 7.52 22.50 0.17 -0.74 16 27 C -0.21 -3.15 9.18 22.36 0.21 -2.94 16 28 H 0.06 0.44 7.93 -2.39 -0.02 0.42 16 29 H 0.10 0.27 7.79 -2.39 -0.02 0.26 16 30 H 0.06 0.45 7.93 -2.39 -0.02 0.43 16 31 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.09 0.19 7.92 -2.39 -0.02 0.17 16 33 H 0.08 0.36 6.17 -2.39 -0.01 0.35 16 34 H 0.14 2.21 6.70 -2.91 -0.02 2.19 16 35 H 0.11 3.23 7.80 -2.91 -0.02 3.21 16 36 H 0.09 1.25 7.21 -2.39 -0.02 1.23 16 37 H 0.08 1.53 6.30 -2.38 -0.02 1.51 16 38 H 0.11 1.73 4.92 -2.38 -0.01 1.72 16 39 H 0.09 3.39 8.03 -2.39 -0.02 3.37 16 40 H 0.05 2.01 7.66 -2.39 -0.02 2.00 16 41 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.09 3.27 6.71 -2.39 -0.02 3.26 16 43 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.05 2.97 7.00 -2.39 -0.02 2.95 16 45 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 46 H 0.17 2.38 4.21 -2.91 -0.01 2.37 16 47 H 0.16 1.40 6.11 -2.91 -0.02 1.39 16 Total: -1.00 -81.01 371.04 3.88 -77.12 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.97 Total: 11.33 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 8.05 Total: 15.19 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -7.11 Total: -126.30 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.07 Total: -26.90 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.56 kcal Total: -81.01 3.88 -77.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085945667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.840 kcal (2) G-P(sol) polarization free energy of solvation -81.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds