Wall clock time and date at job start Tue Mar 31 2020 11:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99687 * 2 1 4 4 C 1.38878 * 111.00403 * 123.95526 * 2 1 3 5 5 C 1.38952 * 120.17273 * 295.35561 * 4 2 1 6 6 C 1.37959 * 120.06286 * 179.72244 * 5 4 2 7 7 C 1.38613 * 120.42135 * 0.02562 * 6 5 4 8 8 C 1.37742 * 120.35231 * 359.97438 * 7 6 5 9 9 C 1.39738 * 119.92734 * 0.04177 * 8 7 6 10 10 C 1.47434 * 120.20898 * 180.02562 * 9 8 7 11 11 O 1.21596 * 120.00131 * 178.83738 * 10 9 8 12 12 N 1.34778 * 119.99629 * 358.84177 * 10 9 8 13 13 C 1.46499 * 119.99581 * 188.75777 * 12 10 9 14 14 C 1.46499 * 120.00384 * 8.76282 * 12 10 9 15 15 C 1.53001 * 109.46909 * 283.90307 * 14 12 10 16 16 H 1.09004 * 112.96156 * 54.60561 * 15 14 12 17 17 C 1.53946 * 113.77025 * 186.27519 * 15 14 12 18 18 C 1.53946 * 86.28822 * 137.91262 * 17 15 14 19 19 N 1.47571 * 113.77179 * 282.92174 * 15 14 12 20 20 C 1.36939 * 134.49577 * 41.06770 * 19 15 14 21 21 H 1.08000 * 119.99471 * 6.00453 * 20 19 15 22 22 C 1.38811 * 120.00515 * 186.00543 * 20 19 15 23 23 N 1.31621 * 119.99578 * 5.12564 * 22 20 19 24 24 Si 1.86800 * 120.00099 * 185.12045 * 22 20 19 25 25 H 1.48500 * 109.46894 * 95.00025 * 24 22 20 26 26 H 1.48500 * 109.47106 * 214.99795 * 24 22 20 27 27 H 1.48492 * 109.47339 * 334.99907 * 24 22 20 28 28 H 1.09003 * 109.46981 * 296.03778 * 1 2 3 29 29 H 1.08998 * 109.47254 * 56.04784 * 1 2 3 30 30 H 1.09007 * 109.46845 * 176.04291 * 1 2 3 31 31 H 1.08999 * 109.47611 * 188.69851 * 3 2 1 32 32 H 1.08998 * 109.47286 * 308.70869 * 3 2 1 33 33 H 1.09007 * 109.47037 * 68.70173 * 3 2 1 34 34 H 1.08003 * 119.97325 * 359.70252 * 5 4 2 35 35 H 1.08002 * 119.78991 * 179.97438 * 6 5 4 36 36 H 1.07997 * 119.82091 * 179.97438 * 7 6 5 37 37 H 1.08002 * 120.03786 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.47230 * 83.51312 * 13 12 10 39 39 H 1.09003 * 109.47199 * 203.50930 * 13 12 10 40 40 H 1.08992 * 109.47696 * 323.51130 * 13 12 10 41 41 H 1.09002 * 109.46963 * 43.90332 * 14 12 10 42 42 H 1.08998 * 109.47208 * 163.90767 * 14 12 10 43 43 H 1.08997 * 113.74305 * 252.26061 * 17 15 14 44 44 H 1.09005 * 113.74092 * 23.46107 * 17 15 14 45 45 H 1.08996 * 113.77133 * 90.69990 * 18 17 15 46 46 H 1.09000 * 113.76325 * 221.98005 * 18 17 15 47 47 H 0.97000 * 119.99527 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9668 -0.7242 1.0754 5 6 1.7369 -0.2909 2.3755 6 6 2.2275 -1.0151 3.4423 7 6 2.9522 -2.1771 3.2278 8 6 3.1903 -2.6224 1.9463 9 6 2.7004 -1.9000 0.8550 10 6 2.9511 -2.3713 -0.5194 11 8 2.5051 -1.7513 -1.4655 12 7 3.6746 -3.4893 -0.7269 13 6 4.0869 -3.8534 -2.0847 14 6 4.0486 -4.3405 0.4053 15 6 5.1963 -3.6868 1.1775 16 1 4.9709 -2.6678 1.4923 17 6 5.7714 -4.5698 2.2997 18 6 7.1573 -4.0954 1.8261 19 7 6.5113 -3.8303 0.5233 20 6 6.9535 -3.7504 -0.7702 21 1 6.2771 -3.4430 -1.5541 22 6 8.2710 -4.0646 -1.0740 23 7 9.0678 -4.5354 -0.1382 24 14 8.9130 -3.8192 -2.8110 25 1 9.5779 -2.4951 -2.9105 26 1 9.8908 -4.8895 -3.1331 27 1 7.7809 -3.8780 -3.7701 28 1 -0.3633 0.4511 0.9234 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0740 1.3468 -0.1554 32 1 1.5256 1.9410 -0.8019 33 1 1.7771 1.8445 0.9575 34 1 1.1738 0.6139 2.5511 35 1 2.0466 -0.6740 4.4509 36 1 3.3321 -2.7362 4.0700 37 1 3.7559 -3.5282 1.7850 38 1 4.9974 -3.3137 -2.3450 39 1 4.2743 -4.9262 -2.1321 40 1 3.2959 -3.5914 -2.7872 41 1 3.1904 -4.4645 1.0657 42 1 4.3676 -5.3156 0.0370 43 1 5.5105 -4.2309 3.3022 44 1 5.5967 -5.6357 2.1526 45 1 7.5099 -3.1960 2.3308 46 1 7.9058 -4.8871 1.7956 47 1 9.9886 -4.7546 -0.3504 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085998626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:19 Heat of formation + Delta-G solvation = 156.705928 kcal Electronic energy + Delta-G solvation = -28437.664746 eV Core-core repulsion = 24819.833056 eV Total energy + Delta-G solvation = -3617.831690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.94877 -38.89078 -37.90933 -36.41908 -34.73332 -32.49590 -31.44506 -29.99183 -28.46414 -27.71300 -27.55977 -26.51739 -24.45210 -23.37921 -22.96905 -22.60267 -21.07618 -19.35989 -18.99205 -17.25824 -16.95828 -16.52657 -15.93118 -15.42236 -15.08084 -14.90885 -14.76810 -14.57809 -14.09085 -13.66743 -13.60234 -13.51833 -13.27035 -12.80906 -12.41613 -12.39037 -12.27259 -12.02039 -11.93718 -11.67216 -11.64534 -11.52271 -11.39950 -11.20390 -10.94256 -10.74305 -10.56089 -10.18675 -9.98184 -9.75901 -9.34953 -9.26497 -8.88535 -8.65208 -8.52762 -8.16759 -8.01270 -6.81862 -5.74219 -3.07307 1.04805 1.37834 3.24568 3.39307 3.45331 3.46673 3.50310 3.90826 4.05697 4.39490 4.75376 4.85286 4.95021 5.10863 5.12342 5.26583 5.31834 5.36442 5.40157 5.51092 5.51204 5.55320 5.62096 5.66394 5.73878 5.79893 5.85763 5.92080 5.97058 6.03842 6.09631 6.16163 6.28920 6.36596 6.39476 6.42415 6.52565 6.58690 6.62399 6.84408 6.97587 7.02613 7.25273 7.41299 7.49506 7.64432 7.92374 8.03010 8.76845 9.07007 9.73688 10.61135 11.41079 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.004833 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.941074 B = 5792.046683 C = 6722.373098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.490 5.490 3 C 0.033 3.967 4 C 0.145 3.855 5 C -0.175 4.175 6 C -0.088 4.088 7 C -0.141 4.141 8 C -0.137 4.137 9 C -0.116 4.116 10 C 0.555 3.445 11 O -0.511 6.511 12 N -0.600 5.600 13 C 0.090 3.910 14 C 0.092 3.908 15 C 0.098 3.902 16 H 0.068 0.932 17 C -0.162 4.162 18 C 0.150 3.850 19 N -0.594 5.594 20 C -0.224 4.224 21 H 0.091 0.909 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.903 3.097 25 H -0.291 1.291 26 H -0.291 1.291 27 H -0.279 1.279 28 H 0.023 0.977 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.207 0.793 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.055 0.945 44 H 0.080 0.920 45 H 0.022 0.978 46 H 0.083 0.917 47 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.433 4.063 7.372 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.210 5.210 3 C -0.114 4.114 4 C 0.049 3.951 5 C -0.195 4.195 6 C -0.107 4.107 7 C -0.159 4.159 8 C -0.154 4.154 9 C -0.120 4.120 10 C 0.343 3.657 11 O -0.387 6.387 12 N -0.333 5.333 13 C -0.052 4.052 14 C -0.032 4.032 15 C -0.009 4.009 16 H 0.084 0.916 17 C -0.201 4.201 18 C 0.025 3.975 19 N -0.319 5.319 20 C -0.351 4.351 21 H 0.108 0.892 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.733 3.267 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.137 0.863 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.222 0.778 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.040 0.960 46 H 0.101 0.899 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.275 4.139 6.075 16.952 hybrid contribution 0.392 0.848 -0.007 0.934 sum -14.883 4.987 6.069 16.829 Atomic orbital electron populations 1.22356 0.86025 1.02437 1.00071 1.59207 1.07713 1.13496 1.40621 1.22415 1.01507 0.87486 0.99952 1.18709 0.94783 0.92923 0.88658 1.21528 1.03579 1.01320 0.93069 1.21167 0.96397 0.94771 0.98407 1.21172 1.00261 0.97241 0.97242 1.24391 0.95591 1.03439 0.91991 1.19969 1.01786 0.96469 0.93812 1.18003 0.78656 0.80431 0.88600 1.90771 1.49596 1.55245 1.43054 1.47532 1.53317 1.24259 1.08175 1.21809 1.00322 1.00834 0.82270 1.22543 0.96964 0.95326 0.88366 1.23478 0.88161 0.97311 0.91969 0.91576 1.23874 1.00510 0.99679 0.96002 1.22348 0.93153 0.97861 0.84184 1.46048 1.01478 1.82523 1.01891 1.19416 0.94929 1.38051 0.82684 0.89173 1.24758 0.96617 1.01614 0.97426 1.69819 1.06163 1.48946 1.31656 0.86238 0.78835 0.77411 0.84186 1.21801 1.21753 1.20421 0.95832 0.91043 0.91456 0.91183 0.91055 0.95642 0.86304 0.86218 0.85522 0.77752 0.91261 0.91170 0.91929 0.90073 0.89037 0.92666 0.90172 0.95973 0.89890 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 9.38 60.07 0.56 1.02 16 2 N -0.49 -7.43 2.92 -186.62 -0.55 -7.98 16 3 C 0.03 0.43 9.45 60.07 0.57 1.00 16 4 C 0.14 2.23 4.72 -83.62 -0.39 1.84 16 5 C -0.17 -2.22 8.50 -39.42 -0.34 -2.56 16 6 C -0.09 -1.02 10.03 -39.55 -0.40 -1.42 16 7 C -0.14 -1.74 10.02 -39.62 -0.40 -2.13 16 8 C -0.14 -2.00 5.54 -39.20 -0.22 -2.22 16 9 C -0.12 -1.96 5.72 -104.80 -0.60 -2.56 16 10 C 0.55 10.67 7.53 -12.51 -0.09 10.58 16 11 O -0.51 -10.96 14.68 5.28 0.08 -10.88 16 12 N -0.60 -10.97 2.93 -218.02 -0.64 -11.61 16 13 C 0.09 1.62 9.48 59.85 0.57 2.19 16 14 C 0.09 1.51 4.86 -4.04 -0.02 1.49 16 15 C 0.10 1.82 2.68 -66.87 -0.18 1.64 16 16 H 0.07 1.30 5.03 -51.93 -0.26 1.03 16 17 C -0.16 -2.70 7.60 -25.79 -0.20 -2.90 16 18 C 0.15 3.32 7.75 -2.85 -0.02 3.30 16 19 N -0.59 -14.15 3.58 -214.69 -0.77 -14.91 16 20 C -0.22 -5.92 10.31 -15.06 -0.16 -6.07 16 21 H 0.09 2.32 3.97 -52.49 -0.21 2.11 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -26.50 11.30 55.49 0.63 -25.87 16 24 Si 0.90 21.98 29.56 -169.99 -5.02 16.96 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H 0.02 0.24 7.38 -51.93 -0.38 -0.14 16 29 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.81 8.04 -51.93 -0.42 0.39 16 33 H 0.03 0.28 6.91 -51.92 -0.36 -0.08 16 34 H 0.12 1.29 6.99 -52.48 -0.37 0.92 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.21 2.98 1.19 -149.09 -0.18 2.80 16 38 H 0.07 1.42 5.46 -51.93 -0.28 1.14 16 39 H 0.07 1.16 7.73 -51.93 -0.40 0.75 16 40 H 0.06 1.08 7.51 -51.93 -0.39 0.69 16 41 H 0.08 1.11 5.77 -51.93 -0.30 0.81 16 42 H 0.09 1.52 7.70 -51.93 -0.40 1.12 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.08 2.05 6.85 -51.93 -0.36 1.70 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 359.03 15.07 5.41 5.41 Total: -1.00 -32.52 359.03 -9.08 -41.60 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.81 Total: 4.42 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -1.40 Total: 2.88 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -1.32 Total: -60.38 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.52 -9.08 -41.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085998626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.301 kcal (2) G-P(sol) polarization free energy of solvation -32.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds