Wall clock time and date at job start Tue Mar 31 2020 11:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99687 * 2 1 4 4 C 1.38878 * 111.00403 * 123.95526 * 2 1 3 5 5 C 1.38952 * 120.17273 * 295.35561 * 4 2 1 6 6 C 1.37959 * 120.06286 * 179.72244 * 5 4 2 7 7 C 1.38613 * 120.42135 * 0.02562 * 6 5 4 8 8 C 1.37742 * 120.35231 * 359.97438 * 7 6 5 9 9 C 1.39738 * 119.92734 * 0.04177 * 8 7 6 10 10 C 1.47434 * 120.20898 * 180.02562 * 9 8 7 11 11 O 1.21596 * 120.00131 * 178.83738 * 10 9 8 12 12 N 1.34778 * 119.99629 * 358.84177 * 10 9 8 13 13 C 1.46499 * 119.99581 * 188.75777 * 12 10 9 14 14 C 1.46499 * 120.00384 * 8.76282 * 12 10 9 15 15 C 1.53001 * 109.46909 * 283.90307 * 14 12 10 16 16 H 1.09004 * 112.96156 * 54.60561 * 15 14 12 17 17 C 1.53946 * 113.77025 * 186.27519 * 15 14 12 18 18 C 1.53946 * 86.28822 * 137.91262 * 17 15 14 19 19 N 1.47571 * 113.77179 * 282.92174 * 15 14 12 20 20 C 1.36939 * 134.49577 * 41.06770 * 19 15 14 21 21 H 1.08000 * 119.99471 * 6.00453 * 20 19 15 22 22 C 1.38811 * 120.00515 * 186.00543 * 20 19 15 23 23 N 1.31621 * 119.99578 * 5.12564 * 22 20 19 24 24 Si 1.86800 * 120.00099 * 185.12045 * 22 20 19 25 25 H 1.48500 * 109.46894 * 95.00025 * 24 22 20 26 26 H 1.48500 * 109.47106 * 214.99795 * 24 22 20 27 27 H 1.48492 * 109.47339 * 334.99907 * 24 22 20 28 28 H 1.09003 * 109.46981 * 296.03778 * 1 2 3 29 29 H 1.08998 * 109.47254 * 56.04784 * 1 2 3 30 30 H 1.09007 * 109.46845 * 176.04291 * 1 2 3 31 31 H 1.08999 * 109.47611 * 188.69851 * 3 2 1 32 32 H 1.08998 * 109.47286 * 308.70869 * 3 2 1 33 33 H 1.09007 * 109.47037 * 68.70173 * 3 2 1 34 34 H 1.08003 * 119.97325 * 359.70252 * 5 4 2 35 35 H 1.08002 * 119.78991 * 179.97438 * 6 5 4 36 36 H 1.07997 * 119.82091 * 179.97438 * 7 6 5 37 37 H 1.08002 * 120.03786 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.47230 * 83.51312 * 13 12 10 39 39 H 1.09003 * 109.47199 * 203.50930 * 13 12 10 40 40 H 1.08992 * 109.47696 * 323.51130 * 13 12 10 41 41 H 1.09002 * 109.46963 * 43.90332 * 14 12 10 42 42 H 1.08998 * 109.47208 * 163.90767 * 14 12 10 43 43 H 1.08997 * 113.74305 * 252.26061 * 17 15 14 44 44 H 1.09005 * 113.74092 * 23.46107 * 17 15 14 45 45 H 1.08996 * 113.77133 * 90.69990 * 18 17 15 46 46 H 1.09000 * 113.76325 * 221.98005 * 18 17 15 47 47 H 0.97000 * 119.99527 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9668 -0.7242 1.0754 5 6 1.7369 -0.2909 2.3755 6 6 2.2275 -1.0151 3.4423 7 6 2.9522 -2.1771 3.2278 8 6 3.1903 -2.6224 1.9463 9 6 2.7004 -1.9000 0.8550 10 6 2.9511 -2.3713 -0.5194 11 8 2.5051 -1.7513 -1.4655 12 7 3.6746 -3.4893 -0.7269 13 6 4.0869 -3.8534 -2.0847 14 6 4.0486 -4.3405 0.4053 15 6 5.1963 -3.6868 1.1775 16 1 4.9709 -2.6678 1.4923 17 6 5.7714 -4.5698 2.2997 18 6 7.1573 -4.0954 1.8261 19 7 6.5113 -3.8303 0.5233 20 6 6.9535 -3.7504 -0.7702 21 1 6.2771 -3.4430 -1.5541 22 6 8.2710 -4.0646 -1.0740 23 7 9.0678 -4.5354 -0.1382 24 14 8.9130 -3.8192 -2.8110 25 1 9.5779 -2.4951 -2.9105 26 1 9.8908 -4.8895 -3.1331 27 1 7.7809 -3.8780 -3.7701 28 1 -0.3633 0.4511 0.9234 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0740 1.3468 -0.1554 32 1 1.5256 1.9410 -0.8019 33 1 1.7771 1.8445 0.9575 34 1 1.1738 0.6139 2.5511 35 1 2.0466 -0.6740 4.4509 36 1 3.3321 -2.7362 4.0700 37 1 3.7559 -3.5282 1.7850 38 1 4.9974 -3.3137 -2.3450 39 1 4.2743 -4.9262 -2.1321 40 1 3.2959 -3.5914 -2.7872 41 1 3.1904 -4.4645 1.0657 42 1 4.3676 -5.3156 0.0370 43 1 5.5105 -4.2309 3.3022 44 1 5.5967 -5.6357 2.1526 45 1 7.5099 -3.1960 2.3308 46 1 7.9058 -4.8871 1.7956 47 1 9.9886 -4.7546 -0.3504 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085998626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:18 Heat of formation + Delta-G solvation = 136.372696 kcal Electronic energy + Delta-G solvation = -28438.546461 eV Core-core repulsion = 24819.833056 eV Total energy + Delta-G solvation = -3618.713405 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.20713 -40.13529 -39.37056 -37.54257 -36.17447 -34.35059 -32.74702 -31.10908 -29.91944 -29.39682 -28.52538 -27.90436 -25.50501 -25.20362 -24.31921 -23.86510 -22.25522 -20.75510 -20.44547 -18.86905 -18.23049 -17.88737 -17.22284 -16.79011 -16.54365 -16.08541 -15.99021 -15.82991 -15.71335 -15.20017 -15.11015 -14.66229 -14.45916 -14.19798 -13.77431 -13.53095 -13.49045 -13.27164 -13.21189 -13.10148 -12.98586 -12.91416 -12.67888 -12.59360 -12.48052 -12.43141 -12.24251 -11.73549 -11.48796 -11.33395 -11.06869 -10.78394 -10.70819 -9.79424 -9.66404 -9.43810 -9.18425 -8.71680 -7.81149 -5.12332 -0.03978 0.38310 1.42215 1.44974 1.51470 1.98851 2.15976 2.48680 2.90530 2.91802 3.26557 3.39912 3.62700 3.94207 3.97857 4.06174 4.16096 4.19135 4.24238 4.33230 4.34536 4.42212 4.49092 4.56408 4.61176 4.63345 4.67843 4.72284 4.75796 4.83870 4.89468 4.91661 4.93105 4.99751 5.08304 5.12942 5.37063 5.42726 5.49607 5.55279 5.60529 5.73648 5.81222 5.88601 6.02150 6.07249 6.43951 6.57543 7.03441 7.34772 7.72593 8.67110 9.33858 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.004833 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.941074 B = 5792.046683 C = 6722.373098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.522 5.522 3 C 0.037 3.963 4 C 0.131 3.869 5 C -0.174 4.174 6 C -0.077 4.077 7 C -0.138 4.138 8 C -0.142 4.142 9 C -0.151 4.151 10 C 0.547 3.453 11 O -0.547 6.547 12 N -0.606 5.606 13 C 0.094 3.906 14 C 0.096 3.904 15 C 0.103 3.897 16 H 0.066 0.934 17 C -0.128 4.128 18 C 0.136 3.864 19 N -0.623 5.623 20 C -0.215 4.215 21 H 0.093 0.907 22 C -0.067 4.067 23 N -0.949 5.949 24 Si 0.952 3.048 25 H -0.300 1.300 26 H -0.294 1.294 27 H -0.267 1.267 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.140 0.860 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.203 0.797 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.118 0.882 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.094 0.906 45 H 0.012 0.988 46 H 0.051 0.949 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.842 4.438 10.009 20.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.243 5.243 3 C -0.110 4.110 4 C 0.035 3.965 5 C -0.194 4.194 6 C -0.096 4.096 7 C -0.156 4.156 8 C -0.159 4.159 9 C -0.155 4.155 10 C 0.337 3.663 11 O -0.425 6.425 12 N -0.337 5.337 13 C -0.048 4.048 14 C -0.027 4.027 15 C -0.003 4.003 16 H 0.082 0.918 17 C -0.166 4.166 18 C 0.011 3.989 19 N -0.349 5.349 20 C -0.343 4.343 21 H 0.110 0.890 22 C -0.260 4.260 23 N -0.600 5.600 24 Si 0.782 3.218 25 H -0.228 1.228 26 H -0.221 1.221 27 H -0.192 1.192 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.158 0.842 35 H 0.175 0.825 36 H 0.177 0.823 37 H 0.219 0.781 38 H 0.058 0.942 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.136 0.864 42 H 0.108 0.892 43 H 0.118 0.882 44 H 0.113 0.887 45 H 0.030 0.970 46 H 0.069 0.931 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -17.729 4.509 8.731 20.270 hybrid contribution 1.033 0.828 -0.745 1.519 sum -16.695 5.337 7.985 19.261 Atomic orbital electron populations 1.22339 0.84579 1.02001 1.01521 1.59111 1.09224 1.14366 1.41604 1.22377 0.99913 0.87130 1.01568 1.18932 0.94889 0.92746 0.89902 1.21778 1.03406 1.02072 0.92152 1.21627 0.94421 0.93770 0.99783 1.21566 0.99459 0.97547 0.97006 1.24280 0.95898 1.03235 0.92521 1.19994 1.04407 0.98280 0.92853 1.18569 0.78003 0.80081 0.89658 1.90730 1.51170 1.56238 1.44407 1.47675 1.53034 1.24562 1.08476 1.21696 0.99003 1.01203 0.82945 1.22622 0.97506 0.94371 0.88177 1.23649 0.86662 0.97848 0.92105 0.91756 1.23648 0.95324 1.00120 0.97541 1.22349 0.95494 0.96704 0.84328 1.46457 1.04419 1.82485 1.01547 1.19773 0.94763 1.35315 0.84481 0.88970 1.25381 0.97356 1.03089 1.00139 1.69982 1.05846 1.51231 1.32913 0.85435 0.78349 0.76441 0.81573 1.22822 1.22114 1.19171 0.93671 0.90267 0.92742 0.93759 0.89900 0.93513 0.84230 0.82514 0.82251 0.78101 0.94154 0.89727 0.91659 0.86430 0.89225 0.88182 0.88746 0.97046 0.93107 0.94810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.95 9.38 127.69 1.20 2.15 16 2 N -0.52 -15.39 2.92 -744.35 -2.17 -17.57 16 3 C 0.04 0.92 9.45 127.69 1.21 2.12 16 4 C 0.13 3.81 4.72 38.71 0.18 3.99 16 5 C -0.17 -3.79 8.50 22.37 0.19 -3.60 16 6 C -0.08 -1.40 10.03 22.29 0.22 -1.17 16 7 C -0.14 -2.72 10.02 22.24 0.22 -2.49 16 8 C -0.14 -3.72 5.54 22.51 0.12 -3.59 16 9 C -0.15 -4.91 5.72 -19.98 -0.11 -5.03 16 10 C 0.55 21.09 7.53 86.67 0.65 21.75 16 11 O -0.55 -24.09 14.68 -4.02 -0.06 -24.15 16 12 N -0.61 -21.97 2.93 -961.94 -2.82 -24.79 16 13 C 0.09 3.46 9.48 127.77 1.21 4.67 16 14 C 0.10 2.99 4.86 86.38 0.42 3.41 16 15 C 0.10 3.63 2.68 45.09 0.12 3.75 16 16 H 0.07 2.39 5.03 -2.39 -0.01 2.38 16 17 C -0.13 -3.87 7.60 31.25 0.24 -3.63 16 18 C 0.14 6.02 7.75 86.44 0.67 6.69 16 19 N -0.62 -29.68 3.58 -833.16 -2.98 -32.66 16 20 C -0.21 -11.57 10.31 84.03 0.87 -10.70 16 21 H 0.09 4.85 3.97 -2.91 -0.01 4.84 16 22 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 23 N -0.95 -56.61 11.30 21.65 0.24 -56.36 16 24 Si 0.95 46.51 29.56 68.60 2.03 48.54 16 25 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 26 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 28 H 0.04 0.81 7.38 -2.39 -0.02 0.80 16 29 H 0.08 1.63 8.07 -2.39 -0.02 1.61 16 30 H 0.05 1.35 8.14 -2.38 -0.02 1.34 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.80 8.04 -2.39 -0.02 1.78 16 33 H 0.05 0.93 6.91 -2.38 -0.02 0.92 16 34 H 0.14 2.40 6.99 -2.91 -0.02 2.38 16 35 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 36 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.20 5.17 1.19 -93.65 -0.11 5.06 16 38 H 0.04 1.71 5.46 -2.39 -0.01 1.70 16 39 H 0.08 2.79 7.73 -2.39 -0.02 2.77 16 40 H 0.06 2.32 7.51 -2.39 -0.02 2.31 16 41 H 0.12 2.84 5.77 -2.39 -0.01 2.83 16 42 H 0.09 2.82 7.70 -2.39 -0.02 2.80 16 43 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.09 2.64 8.10 -2.38 -0.02 2.62 16 45 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.05 2.57 6.85 -2.39 -0.02 2.55 16 47 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -74.67 359.03 3.00 -71.67 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.88 Total: 20.33 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 7.88 Total: 14.99 kcal Atomic # 7 Polarization: -123.66 SS G_CDS: -7.73 Total: -131.38 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.06 Total: -24.15 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -74.67 3.00 -71.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085998626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.043 kcal (2) G-P(sol) polarization free energy of solvation -74.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds