Wall clock time and date at job start Tue Mar 31 2020 11:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 111.00273 * 2 1 4 4 C 1.38875 * 111.00323 * 123.96015 * 2 1 3 5 5 C 1.38961 * 120.17193 * 300.02221 * 4 2 1 6 6 C 1.37952 * 120.06208 * 179.97438 * 5 4 2 7 7 C 1.38602 * 120.42380 * 359.97438 * 6 5 4 8 8 C 1.37746 * 120.35656 * 0.02562 * 7 6 5 9 9 C 1.39739 * 119.92519 * 0.02562 * 8 7 6 10 10 C 1.47433 * 120.20917 * 179.97438 * 9 8 7 11 11 O 1.21604 * 119.99894 * 131.81195 * 10 9 8 12 12 N 1.34774 * 119.99975 * 311.80775 * 10 9 8 13 13 C 1.46500 * 119.99821 * 4.40369 * 12 10 9 14 14 C 1.46495 * 120.00186 * 184.40494 * 12 10 9 15 15 C 1.53000 * 109.47238 * 95.47846 * 14 12 10 16 16 H 1.09007 * 112.96454 * 65.65466 * 15 14 12 17 17 C 1.53947 * 113.77126 * 293.97585 * 15 14 12 18 18 C 1.53938 * 86.29190 * 222.09143 * 17 15 14 19 19 N 1.47577 * 86.12084 * 23.60318 * 18 17 15 20 20 C 1.36935 * 134.49831 * 155.35545 * 19 18 17 21 21 H 1.07998 * 120.00479 * 185.98577 * 20 19 18 22 22 C 1.38816 * 119.99677 * 5.98746 * 20 19 18 23 23 N 1.31627 * 120.00099 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00006 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47191 * 60.00172 * 24 22 20 26 26 H 1.48503 * 109.46793 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47086 * 299.99920 * 24 22 20 28 28 H 1.09006 * 109.46660 * 296.04346 * 1 2 3 29 29 H 1.08997 * 109.47043 * 56.03742 * 1 2 3 30 30 H 1.08999 * 109.47303 * 176.04529 * 1 2 3 31 31 H 1.09000 * 109.47148 * 183.95026 * 3 2 1 32 32 H 1.08994 * 109.47195 * 303.95776 * 3 2 1 33 33 H 1.08999 * 109.46727 * 63.95922 * 3 2 1 34 34 H 1.07998 * 119.96504 * 359.97438 * 5 4 2 35 35 H 1.08003 * 119.78751 * 179.97438 * 6 5 4 36 36 H 1.08002 * 119.82370 * 180.28456 * 7 6 5 37 37 H 1.08001 * 120.04044 * 180.02562 * 8 7 6 38 38 H 1.09007 * 109.47081 * 85.12421 * 13 12 10 39 39 H 1.09000 * 109.47466 * 205.11932 * 13 12 10 40 40 H 1.08995 * 109.47463 * 325.12409 * 13 12 10 41 41 H 1.08998 * 109.47311 * 215.47960 * 14 12 10 42 42 H 1.09004 * 109.47217 * 335.48231 * 14 12 10 43 43 H 1.09004 * 113.73711 * 336.43863 * 17 15 14 44 44 H 1.09004 * 113.74023 * 107.63518 * 17 15 14 45 45 H 1.08996 * 113.77200 * 137.90939 * 18 17 15 46 46 H 1.09004 * 113.76774 * 269.19188 * 18 17 15 47 47 H 0.96989 * 119.99971 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9667 -0.7242 1.0753 5 6 1.6559 -0.3461 2.3759 6 6 2.1512 -1.0674 3.4424 7 6 2.9599 -2.1723 3.2274 8 6 3.2790 -2.5626 1.9455 9 6 2.7863 -1.8419 0.8543 10 6 3.1243 -2.2537 -0.5204 11 8 2.2486 -2.3516 -1.3584 12 7 4.4038 -2.5216 -0.8482 13 6 5.4445 -2.4976 0.1827 14 6 4.7540 -2.8367 -2.2353 15 6 5.2332 -1.5668 -2.9414 16 1 6.1659 -1.1786 -2.5319 17 6 4.1372 -0.4988 -3.1092 18 6 4.6972 -0.2904 -4.5279 19 7 5.2227 -1.6648 -4.4140 20 6 5.5634 -2.6396 -5.3133 21 1 5.8436 -3.6224 -4.9641 22 6 5.5488 -2.3645 -6.6738 23 7 5.2079 -1.1664 -7.0994 24 14 6.0144 -3.6940 -7.9006 25 1 5.0881 -4.8458 -7.7576 26 1 5.9199 -3.1503 -9.2793 27 1 7.4059 -4.1425 -7.6402 28 1 -0.3633 0.4512 0.9234 29 1 -0.3633 0.5741 -0.8523 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9164 -0.8523 33 1 1.7045 1.8723 0.9233 34 1 1.0260 0.5134 2.5518 35 1 1.9071 -0.7693 4.4514 36 1 3.3386 -2.7328 4.0693 37 1 3.9093 -3.4245 1.7838 38 1 5.4820 -3.4650 0.6837 39 1 6.4095 -2.2905 -0.2799 40 1 5.2163 -1.7198 0.9113 41 1 5.5492 -3.5821 -2.2490 42 1 3.8780 -3.2304 -2.7508 43 1 3.1248 -0.9026 -3.0919 44 1 4.2617 0.3643 -2.4552 45 1 3.9279 -0.1761 -5.2915 46 1 5.4716 0.4744 -4.5865 47 1 5.1981 -0.9741 -8.0500 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085998627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:23 Heat of formation + Delta-G solvation = 77.451024 kcal Electronic energy + Delta-G solvation = -27679.288336 eV Core-core repulsion = 24058.019896 eV Total energy + Delta-G solvation = -3621.268441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.59539 -38.91138 -37.41814 -36.68322 -34.96674 -32.10922 -31.48021 -30.08783 -28.28678 -27.70594 -27.62136 -26.39776 -24.75740 -23.68297 -23.11995 -22.10019 -21.10893 -19.38106 -18.81840 -17.33946 -16.79147 -16.42924 -16.18363 -15.68428 -15.23008 -14.99383 -14.92362 -14.58557 -14.26555 -13.88698 -13.76386 -13.44378 -13.30221 -12.84601 -12.64877 -12.48968 -12.41252 -12.25081 -12.14592 -11.97546 -11.73480 -11.71292 -11.31787 -11.24772 -10.91196 -10.72945 -10.59200 -10.32630 -9.76374 -9.60457 -9.50581 -9.33195 -9.07962 -8.86014 -8.66789 -8.48201 -8.15768 -6.72680 -5.64997 -2.96126 0.87796 1.06776 3.00630 3.25788 3.46797 3.50647 3.51896 3.66702 3.74803 4.54176 4.59676 4.66157 4.75153 4.97313 5.13459 5.16019 5.18620 5.22559 5.37278 5.41431 5.44118 5.47670 5.51267 5.58360 5.61773 5.74734 5.76813 5.83422 5.88359 6.01343 6.05246 6.10514 6.18365 6.21061 6.28521 6.53380 6.55242 6.71621 6.82568 6.88909 6.92119 6.97569 7.28652 7.41147 7.63359 7.73763 7.77071 8.11388 8.60033 9.16664 9.83246 10.75775 11.52764 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020847 B = 0.003571 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.771871 B = 7839.125327 C = 8560.340823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.502 5.502 3 C 0.031 3.969 4 C 0.140 3.860 5 C -0.158 4.158 6 C -0.096 4.096 7 C -0.130 4.130 8 C -0.088 4.088 9 C -0.099 4.099 10 C 0.564 3.436 11 O -0.504 6.504 12 N -0.609 5.609 13 C 0.078 3.922 14 C 0.118 3.882 15 C 0.128 3.872 16 H 0.038 0.962 17 C -0.151 4.151 18 C 0.165 3.835 19 N -0.600 5.600 20 C -0.221 4.221 21 H 0.077 0.923 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.908 3.092 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.025 0.975 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.026 0.974 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.039 0.961 45 H 0.064 0.936 46 H 0.023 0.977 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.199 2.475 24.243 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.222 5.222 3 C -0.115 4.115 4 C 0.044 3.956 5 C -0.178 4.178 6 C -0.115 4.115 7 C -0.148 4.148 8 C -0.107 4.107 9 C -0.104 4.104 10 C 0.351 3.649 11 O -0.377 6.377 12 N -0.343 5.343 13 C -0.065 4.065 14 C -0.005 4.005 15 C 0.020 3.980 16 H 0.055 0.945 17 C -0.189 4.189 18 C 0.040 3.960 19 N -0.326 5.326 20 C -0.349 4.349 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.739 3.261 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.041 0.959 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.475 2.083 22.949 23.685 hybrid contribution 0.353 -0.206 0.100 0.421 sum -5.122 1.877 23.049 23.686 Atomic orbital electron populations 1.22387 0.85255 1.03034 1.00315 1.59157 1.08777 1.13878 1.40414 1.22454 1.01235 0.87177 1.00654 1.18682 0.94557 0.93431 0.88895 1.21635 1.02072 1.01154 0.92955 1.21115 0.96635 0.95063 0.98679 1.21067 0.99373 0.97625 0.96778 1.21420 0.98339 0.99254 0.91730 1.20039 0.99707 0.96626 0.93984 1.17905 0.82512 0.77467 0.87039 1.90805 1.46946 1.50014 1.49978 1.47698 1.06909 1.70194 1.09504 1.21885 0.92020 1.00922 0.91693 1.21780 1.01450 0.97949 0.79325 1.22509 0.95395 0.93350 0.86740 0.94485 1.23750 0.99509 0.97143 0.98505 1.22091 0.94973 0.86210 0.92775 1.45951 1.75909 1.12156 0.98578 1.18941 1.39105 0.90539 0.86300 0.90522 1.24783 1.02230 0.96686 0.96704 1.69834 1.53711 1.19609 1.13580 0.86257 0.78260 0.80919 0.80680 1.21117 1.21662 1.21314 0.95670 0.90660 0.90894 0.91145 0.90468 0.95509 0.85901 0.85913 0.85539 0.84949 0.93021 0.90862 0.91461 0.91680 0.88840 0.89525 0.94189 0.91811 0.95896 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 9.34 60.06 0.56 0.98 16 2 N -0.50 -6.73 3.88 -186.63 -0.72 -7.45 16 3 C 0.03 0.35 9.38 60.07 0.56 0.91 16 4 C 0.14 1.77 4.70 -83.61 -0.39 1.38 16 5 C -0.16 -1.56 8.55 -39.42 -0.34 -1.90 16 6 C -0.10 -0.79 10.03 -39.55 -0.40 -1.19 16 7 C -0.13 -1.08 10.02 -39.63 -0.40 -1.48 16 8 C -0.09 -0.91 7.75 -39.20 -0.30 -1.21 16 9 C -0.10 -1.34 4.93 -104.80 -0.52 -1.85 16 10 C 0.56 9.46 6.50 -12.52 -0.08 9.38 16 11 O -0.50 -10.46 14.65 5.27 0.08 -10.39 16 12 N -0.61 -9.50 2.80 -182.85 -0.51 -10.01 16 13 C 0.08 0.87 9.07 59.85 0.54 1.41 16 14 C 0.12 2.25 5.40 -4.04 -0.02 2.22 16 15 C 0.13 2.76 4.58 -66.86 -0.31 2.45 16 16 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 17 C -0.15 -3.25 7.31 -25.81 -0.19 -3.44 16 18 C 0.16 4.20 7.37 -2.98 -0.02 4.18 16 19 N -0.60 -16.03 3.57 -170.75 -0.61 -16.64 16 20 C -0.22 -6.37 10.51 -15.06 -0.16 -6.53 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.92 -28.37 11.55 55.49 0.64 -27.73 16 24 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H 0.02 0.23 7.11 -51.93 -0.37 -0.14 16 29 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 33 H 0.03 0.25 7.33 -51.93 -0.38 -0.13 16 34 H 0.12 1.03 7.01 -52.49 -0.37 0.66 16 35 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.13 1.16 6.23 -52.49 -0.33 0.84 16 38 H 0.05 0.46 7.05 -51.92 -0.37 0.10 16 39 H 0.07 0.79 8.03 -51.93 -0.42 0.38 16 40 H 0.07 0.68 6.24 -51.93 -0.32 0.35 16 41 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 42 H 0.09 2.08 7.21 -51.93 -0.37 1.71 16 43 H 0.09 2.03 6.84 -51.93 -0.36 1.67 16 44 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.78 7.44 -51.93 -0.39 1.40 16 46 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -34.84 376.07 -9.47 -44.32 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.44 Total: -0.57 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: -1.55 Total: 5.01 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: -1.21 Total: -61.83 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.84 -9.47 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085998627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.768 kcal (2) G-P(sol) polarization free energy of solvation -34.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds