Wall clock time and date at job start Tue Mar 31 2020 11:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 111.00273 * 2 1 4 4 C 1.38875 * 111.00323 * 123.96015 * 2 1 3 5 5 C 1.38961 * 120.17193 * 300.02221 * 4 2 1 6 6 C 1.37952 * 120.06208 * 179.97438 * 5 4 2 7 7 C 1.38602 * 120.42380 * 359.97438 * 6 5 4 8 8 C 1.37746 * 120.35656 * 0.02562 * 7 6 5 9 9 C 1.39739 * 119.92519 * 0.02562 * 8 7 6 10 10 C 1.47433 * 120.20917 * 179.97438 * 9 8 7 11 11 O 1.21604 * 119.99894 * 131.81195 * 10 9 8 12 12 N 1.34774 * 119.99975 * 311.80775 * 10 9 8 13 13 C 1.46500 * 119.99821 * 4.40369 * 12 10 9 14 14 C 1.46495 * 120.00186 * 184.40494 * 12 10 9 15 15 C 1.53000 * 109.47238 * 95.47846 * 14 12 10 16 16 H 1.09007 * 112.96454 * 65.65466 * 15 14 12 17 17 C 1.53947 * 113.77126 * 293.97585 * 15 14 12 18 18 C 1.53938 * 86.29190 * 222.09143 * 17 15 14 19 19 N 1.47577 * 86.12084 * 23.60318 * 18 17 15 20 20 C 1.36935 * 134.49831 * 155.35545 * 19 18 17 21 21 H 1.07998 * 120.00479 * 185.98577 * 20 19 18 22 22 C 1.38816 * 119.99677 * 5.98746 * 20 19 18 23 23 N 1.31627 * 120.00099 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00006 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47191 * 60.00172 * 24 22 20 26 26 H 1.48503 * 109.46793 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47086 * 299.99920 * 24 22 20 28 28 H 1.09006 * 109.46660 * 296.04346 * 1 2 3 29 29 H 1.08997 * 109.47043 * 56.03742 * 1 2 3 30 30 H 1.08999 * 109.47303 * 176.04529 * 1 2 3 31 31 H 1.09000 * 109.47148 * 183.95026 * 3 2 1 32 32 H 1.08994 * 109.47195 * 303.95776 * 3 2 1 33 33 H 1.08999 * 109.46727 * 63.95922 * 3 2 1 34 34 H 1.07998 * 119.96504 * 359.97438 * 5 4 2 35 35 H 1.08003 * 119.78751 * 179.97438 * 6 5 4 36 36 H 1.08002 * 119.82370 * 180.28456 * 7 6 5 37 37 H 1.08001 * 120.04044 * 180.02562 * 8 7 6 38 38 H 1.09007 * 109.47081 * 85.12421 * 13 12 10 39 39 H 1.09000 * 109.47466 * 205.11932 * 13 12 10 40 40 H 1.08995 * 109.47463 * 325.12409 * 13 12 10 41 41 H 1.08998 * 109.47311 * 215.47960 * 14 12 10 42 42 H 1.09004 * 109.47217 * 335.48231 * 14 12 10 43 43 H 1.09004 * 113.73711 * 336.43863 * 17 15 14 44 44 H 1.09004 * 113.74023 * 107.63518 * 17 15 14 45 45 H 1.08996 * 113.77200 * 137.90939 * 18 17 15 46 46 H 1.09004 * 113.76774 * 269.19188 * 18 17 15 47 47 H 0.96989 * 119.99971 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9667 -0.7242 1.0753 5 6 1.6559 -0.3461 2.3759 6 6 2.1512 -1.0674 3.4424 7 6 2.9599 -2.1723 3.2274 8 6 3.2790 -2.5626 1.9455 9 6 2.7863 -1.8419 0.8543 10 6 3.1243 -2.2537 -0.5204 11 8 2.2486 -2.3516 -1.3584 12 7 4.4038 -2.5216 -0.8482 13 6 5.4445 -2.4976 0.1827 14 6 4.7540 -2.8367 -2.2353 15 6 5.2332 -1.5668 -2.9414 16 1 6.1659 -1.1786 -2.5319 17 6 4.1372 -0.4988 -3.1092 18 6 4.6972 -0.2904 -4.5279 19 7 5.2227 -1.6648 -4.4140 20 6 5.5634 -2.6396 -5.3133 21 1 5.8436 -3.6224 -4.9641 22 6 5.5488 -2.3645 -6.6738 23 7 5.2079 -1.1664 -7.0994 24 14 6.0144 -3.6940 -7.9006 25 1 5.0881 -4.8458 -7.7576 26 1 5.9199 -3.1503 -9.2793 27 1 7.4059 -4.1425 -7.6402 28 1 -0.3633 0.4512 0.9234 29 1 -0.3633 0.5741 -0.8523 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9164 -0.8523 33 1 1.7045 1.8723 0.9233 34 1 1.0260 0.5134 2.5518 35 1 1.9071 -0.7693 4.4514 36 1 3.3386 -2.7328 4.0693 37 1 3.9093 -3.4245 1.7838 38 1 5.4820 -3.4650 0.6837 39 1 6.4095 -2.2905 -0.2799 40 1 5.2163 -1.7198 0.9113 41 1 5.5492 -3.5821 -2.2490 42 1 3.8780 -3.2304 -2.7508 43 1 3.1248 -0.9026 -3.0919 44 1 4.2617 0.3643 -2.4552 45 1 3.9279 -0.1761 -5.2915 46 1 5.4716 0.4744 -4.5865 47 1 5.1981 -0.9741 -8.0500 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085998627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:22 Heat of formation + Delta-G solvation = 55.403620 kcal Electronic energy + Delta-G solvation = -27680.244383 eV Core-core repulsion = 24058.019896 eV Total energy + Delta-G solvation = -3622.224488 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59720 -40.20731 -39.10531 -37.51942 -36.28180 -34.22551 -32.44967 -30.85403 -29.83715 -29.67634 -28.52010 -27.48887 -25.68490 -25.27840 -24.76660 -23.46110 -22.01755 -20.88123 -20.36870 -18.69998 -18.24964 -17.65159 -17.29863 -16.97433 -16.74086 -16.09087 -15.98827 -15.79367 -15.76520 -15.31164 -14.89595 -14.78793 -14.44042 -14.10043 -13.89987 -13.73173 -13.53729 -13.32649 -13.20939 -13.18898 -12.90404 -12.86583 -12.66738 -12.65468 -12.55352 -12.45456 -12.28019 -12.06271 -11.80819 -11.57485 -11.23696 -10.82802 -10.76091 -9.85330 -9.66714 -9.52524 -9.33798 -8.86118 -7.87807 -5.20727 0.06991 0.35102 1.44243 1.49113 1.54555 1.83896 2.13069 2.51328 2.80302 2.91366 3.32204 3.43091 3.67307 3.94126 3.96691 4.13138 4.19736 4.24567 4.32864 4.34896 4.35832 4.40286 4.47507 4.52193 4.58349 4.63804 4.66718 4.71426 4.81196 4.86229 4.91693 4.95777 4.96136 4.99576 5.07263 5.11166 5.24489 5.36798 5.43531 5.51711 5.52930 5.60704 5.77659 5.85836 5.95895 5.97403 6.43184 6.57576 6.93386 7.36585 7.63694 8.61179 9.30376 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020847 B = 0.003571 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.771871 B = 7839.125327 C = 8560.340823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.534 5.534 3 C 0.035 3.965 4 C 0.121 3.879 5 C -0.160 4.160 6 C -0.085 4.085 7 C -0.122 4.122 8 C -0.087 4.087 9 C -0.129 4.129 10 C 0.561 3.439 11 O -0.559 6.559 12 N -0.607 5.607 13 C 0.073 3.927 14 C 0.133 3.867 15 C 0.136 3.864 16 H 0.056 0.944 17 C -0.121 4.121 18 C 0.162 3.838 19 N -0.627 5.627 20 C -0.230 4.230 21 H 0.087 0.913 22 C -0.072 4.072 23 N -0.957 5.957 24 Si 0.979 3.021 25 H -0.278 1.278 26 H -0.296 1.296 27 H -0.272 1.272 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.138 0.862 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.146 0.854 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.027 0.973 46 H 0.019 0.981 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.180 1.799 28.181 28.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.255 5.255 3 C -0.111 4.111 4 C 0.026 3.974 5 C -0.180 4.180 6 C -0.104 4.104 7 C -0.140 4.140 8 C -0.106 4.106 9 C -0.133 4.133 10 C 0.351 3.649 11 O -0.436 6.436 12 N -0.341 5.341 13 C -0.068 4.068 14 C 0.009 3.991 15 C 0.029 3.971 16 H 0.074 0.926 17 C -0.159 4.159 18 C 0.036 3.964 19 N -0.354 5.354 20 C -0.358 4.358 21 H 0.104 0.896 22 C -0.264 4.264 23 N -0.606 5.606 24 Si 0.807 3.193 25 H -0.205 1.205 26 H -0.222 1.222 27 H -0.198 1.198 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.155 0.845 35 H 0.174 0.826 36 H 0.179 0.821 37 H 0.163 0.837 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.046 0.954 46 H 0.037 0.963 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.424 1.396 26.965 27.361 hybrid contribution 0.008 0.024 -0.980 0.981 sum -4.416 1.421 25.985 26.396 Atomic orbital electron populations 1.22315 0.84824 1.01901 1.01473 1.59071 1.09533 1.14920 1.41958 1.22408 1.00359 0.86665 1.01666 1.18856 0.95071 0.93640 0.89827 1.21788 1.02292 1.01882 0.92085 1.21558 0.94991 0.94101 0.99708 1.21463 0.98328 0.97423 0.96768 1.21593 0.98176 0.99113 0.91677 1.19917 1.02308 0.98499 0.92616 1.18542 0.82056 0.76171 0.88178 1.90771 1.48531 1.52321 1.52022 1.47735 1.07890 1.69688 1.08747 1.22173 0.90668 1.03133 0.90841 1.21312 0.99959 0.96694 0.81170 1.22641 0.95742 0.94416 0.84273 0.92617 1.23383 0.98291 0.98012 0.96241 1.22002 0.94159 0.86198 0.94005 1.46276 1.76091 1.12097 1.00912 1.19391 1.37820 0.91510 0.87086 0.89577 1.25683 1.02973 0.99045 0.98701 1.70040 1.55485 1.21761 1.13355 0.85146 0.78460 0.78104 0.77607 1.20453 1.22201 1.19823 0.93217 0.90863 0.92948 0.92292 0.90835 0.93238 0.84464 0.82583 0.82097 0.83651 0.90194 0.90309 0.90010 0.90134 0.92767 0.91705 0.91591 0.95438 0.96277 0.94435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.96 9.34 127.69 1.19 2.15 16 2 N -0.53 -14.37 3.88 -744.39 -2.89 -17.26 16 3 C 0.04 0.77 9.38 127.69 1.20 1.97 16 4 C 0.12 2.93 4.70 38.71 0.18 3.11 16 5 C -0.16 -2.69 8.55 22.38 0.19 -2.50 16 6 C -0.09 -1.01 10.03 22.29 0.22 -0.79 16 7 C -0.12 -1.45 10.02 22.24 0.22 -1.22 16 8 C -0.09 -1.51 7.75 22.52 0.17 -1.33 16 9 C -0.13 -3.33 4.93 -19.98 -0.10 -3.43 16 10 C 0.56 18.98 6.50 86.67 0.56 19.54 16 11 O -0.56 -24.45 14.65 -4.04 -0.06 -24.51 16 12 N -0.61 -18.48 2.80 -850.67 -2.38 -20.86 16 13 C 0.07 1.43 9.07 127.77 1.16 2.59 16 14 C 0.13 5.09 5.40 86.38 0.47 5.56 16 15 C 0.14 5.87 4.58 45.09 0.21 6.07 16 16 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 17 C -0.12 -5.36 7.31 31.25 0.23 -5.13 16 18 C 0.16 8.62 7.37 86.48 0.64 9.26 16 19 N -0.63 -34.38 3.57 -694.13 -2.48 -36.86 16 20 C -0.23 -13.48 10.51 84.03 0.88 -12.59 16 21 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 22 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 23 N -0.96 -61.20 11.55 21.65 0.25 -60.95 16 24 Si 0.98 47.79 29.55 68.60 2.03 49.82 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 27 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 28 H 0.05 0.87 7.11 -2.38 -0.02 0.85 16 29 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.60 8.12 -2.39 -0.02 1.58 16 33 H 0.05 0.83 7.33 -2.39 -0.02 0.81 16 34 H 0.14 1.84 7.01 -2.91 -0.02 1.81 16 35 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 36 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 37 H 0.15 2.04 6.23 -2.91 -0.02 2.02 16 38 H 0.08 1.13 7.05 -2.38 -0.02 1.11 16 39 H 0.08 1.46 8.03 -2.39 -0.02 1.44 16 40 H 0.08 1.39 6.24 -2.39 -0.01 1.38 16 41 H 0.08 2.80 8.11 -2.39 -0.02 2.78 16 42 H 0.05 2.52 7.21 -2.39 -0.02 2.50 16 43 H 0.06 3.20 6.84 -2.39 -0.02 3.18 16 44 H 0.07 2.56 8.14 -2.38 -0.02 2.54 16 45 H 0.03 1.63 7.44 -2.39 -0.02 1.62 16 46 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.25 15.33 8.31 -92.72 -0.77 14.56 16 Total: -1.00 -80.49 376.07 3.31 -77.18 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.95 Total: 14.02 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 7.90 Total: 19.43 kcal Atomic # 7 Polarization: -128.43 SS G_CDS: -7.50 Total: -135.93 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.06 Total: -24.51 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -80.49 3.31 -77.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085998627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.579 kcal (2) G-P(sol) polarization free energy of solvation -80.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds