Wall clock time and date at job start Tue Mar 31 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 119.99989 * 2 1 4 4 C 1.52993 * 109.47345 * 83.90613 * 3 2 1 5 5 H 1.09004 * 112.96498 * 293.28531 * 4 3 2 6 6 C 1.53949 * 113.77128 * 64.96384 * 4 3 2 7 7 C 1.53950 * 86.28993 * 137.91004 * 6 4 3 8 8 N 1.47588 * 113.77504 * 161.60552 * 4 3 2 9 9 C 1.36939 * 134.48480 * 41.06595 * 8 4 3 10 10 H 1.07997 * 120.00093 * 4.63287 * 9 8 4 11 11 C 1.38812 * 119.99705 * 184.63679 * 9 8 4 12 12 N 1.31621 * 119.99726 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00010 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47066 * 90.00300 * 13 11 9 15 15 H 1.48496 * 109.46952 * 209.99755 * 13 11 9 16 16 H 1.48499 * 109.47241 * 329.99644 * 13 11 9 17 17 C 1.34773 * 120.00087 * 179.97438 * 2 1 3 18 18 O 1.21624 * 120.00281 * 179.85610 * 17 2 1 19 19 C 1.47269 * 119.99675 * 359.85260 * 17 2 1 20 20 C 1.46740 * 126.92498 * 350.55734 * 19 17 2 21 21 C 1.34068 * 106.31218 * 179.85658 * 20 19 17 22 22 N 1.37089 * 109.04202 * 0.43112 * 21 20 19 23 23 C 1.34583 * 109.94510 * 359.69289 * 22 21 20 24 24 C 1.47031 * 123.95595 * 179.63372 * 22 21 20 25 25 C 1.53140 * 108.84326 * 342.49911 * 24 22 21 26 26 C 1.53132 * 109.60141 * 51.17597 * 25 24 22 27 27 C 1.51090 * 126.73106 * 180.20561 * 21 20 19 28 28 H 1.09006 * 109.47023 * 263.77155 * 1 2 3 29 29 H 1.09000 * 109.47594 * 143.76869 * 1 2 3 30 30 H 1.09006 * 109.47075 * 23.76923 * 1 2 3 31 31 H 1.09004 * 109.47116 * 203.90542 * 3 2 1 32 32 H 1.08998 * 109.47045 * 323.90276 * 3 2 1 33 33 H 1.09003 * 113.74283 * 252.25423 * 6 4 3 34 34 H 1.08999 * 113.74009 * 23.45878 * 6 4 3 35 35 H 1.09003 * 113.76489 * 90.69495 * 7 6 4 36 36 H 1.08995 * 113.76557 * 221.97820 * 7 6 4 37 37 H 0.97004 * 119.99523 * 180.02562 * 12 11 9 38 38 H 1.08000 * 126.84293 * 359.97422 * 20 19 17 39 39 H 1.07998 * 125.72257 * 180.02562 * 23 22 21 40 40 H 1.08993 * 109.57641 * 102.30343 * 24 22 21 41 41 H 1.08999 * 109.57624 * 222.69090 * 24 22 21 42 42 H 1.09004 * 109.44914 * 291.13417 * 25 24 22 43 43 H 1.09000 * 109.42834 * 171.20041 * 25 24 22 44 44 H 1.08998 * 109.52501 * 169.93813 * 26 25 24 45 45 H 1.08997 * 109.57968 * 49.76659 * 26 25 24 46 46 H 1.08997 * 109.71874 * 284.17671 * 27 21 20 47 47 H 1.08995 * 109.71735 * 44.82639 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3199 1.7870 1.4343 5 1 1.3608 2.0725 1.8666 6 6 3.1694 0.8863 2.3492 7 6 3.7807 2.1890 2.8964 8 7 3.3779 2.8004 1.6125 9 6 3.8113 3.8740 0.8811 10 1 3.2863 4.1625 -0.0175 11 6 4.9254 4.5913 1.2949 12 7 5.5648 4.2398 2.3903 13 14 5.5162 6.0562 0.2977 14 1 4.8490 7.2894 0.7869 15 1 6.9869 6.1964 0.4478 16 1 5.1825 5.8474 -1.1341 17 6 2.1388 -1.1672 0.0005 18 8 3.3551 -1.1672 -0.0021 19 6 1.4024 -2.4425 0.0044 20 6 -0.0401 -2.6270 0.2004 21 6 -0.2650 -3.9464 0.1225 22 7 0.9251 -4.5908 -0.0962 23 6 1.9262 -3.6943 -0.1681 24 6 1.0572 -6.0493 -0.2272 25 6 -0.2001 -6.7130 0.3418 26 6 -1.4448 -6.0742 -0.2808 27 6 -1.5980 -4.6451 0.2549 28 1 -0.3633 -0.1115 1.0217 29 1 -0.3634 -0.8289 -0.6074 30 1 -0.3633 0.9405 -0.4142 31 1 3.1928 1.1136 -0.4165 32 1 1.6600 1.9985 -0.6054 33 1 2.5857 0.3326 3.0846 34 1 3.8794 0.2588 1.8105 35 1 3.2515 2.5940 3.7590 36 1 4.8595 2.1399 3.0437 37 1 6.3431 4.7413 2.6796 38 1 -0.7745 -1.8538 0.3712 39 1 2.9682 -3.9246 -0.3339 40 1 1.1651 -6.3131 -1.2792 41 1 1.9320 -6.3881 0.3278 42 1 -0.2246 -6.5770 1.4231 43 1 -0.1843 -7.7780 0.1103 44 1 -2.3256 -6.6590 -0.0159 45 1 -1.3379 -6.0473 -1.3652 46 1 -1.8950 -4.6752 1.3032 47 1 -2.3513 -4.1133 -0.3262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086007830.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:11 Heat of formation + Delta-G solvation = 84.939259 kcal Electronic energy + Delta-G solvation = -26793.796359 eV Core-core repulsion = 23172.852633 eV Total energy + Delta-G solvation = -3620.943726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.68945 -39.26677 -37.43530 -36.07436 -35.01715 -33.00785 -32.00511 -30.05015 -28.41691 -27.66995 -27.47917 -26.31028 -24.64539 -23.17359 -22.87746 -21.80715 -21.19839 -19.38108 -18.79916 -18.19033 -17.06174 -16.60715 -16.08954 -15.95097 -15.48892 -15.20837 -14.63418 -14.53726 -14.20498 -13.99586 -13.93908 -13.80485 -13.51254 -13.29731 -12.86884 -12.74833 -12.40101 -12.14089 -12.01958 -11.84420 -11.55621 -11.41805 -11.26690 -11.22555 -11.05062 -10.88627 -10.66650 -10.51940 -10.31422 -9.68737 -9.55130 -9.45171 -9.26849 -8.62683 -8.60181 -8.27324 -7.98808 -6.69436 -5.60476 -2.93204 1.90277 2.34244 2.62248 3.47826 3.49748 3.53991 3.55650 3.86285 4.07639 4.20847 4.28469 4.46797 4.59390 4.79739 4.88306 4.99486 5.02380 5.14399 5.21847 5.29860 5.34313 5.38481 5.40888 5.45878 5.53160 5.58504 5.64695 5.70849 5.79980 5.82688 5.90816 5.99148 6.13555 6.17594 6.32752 6.58290 6.74352 6.76758 6.92575 6.95719 6.99494 7.07893 7.15359 7.44964 7.68690 7.79239 7.92456 8.15774 8.75872 9.19350 9.86492 10.78871 11.55959 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032453 B = 0.002622 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.571497 B =10675.877999 C =10841.917960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.603 5.603 3 C 0.117 3.883 4 C 0.130 3.870 5 H 0.040 0.960 6 C -0.155 4.155 7 C 0.155 3.845 8 N -0.601 5.601 9 C -0.218 4.218 10 H 0.077 0.923 11 C -0.010 4.010 12 N -0.920 5.920 13 Si 0.909 3.091 14 H -0.291 1.291 15 H -0.291 1.291 16 H -0.281 1.281 17 C 0.587 3.413 18 O -0.544 6.544 19 C -0.221 4.221 20 C -0.180 4.180 21 C 0.009 3.991 22 N -0.445 5.445 23 C 0.072 3.928 24 C 0.102 3.898 25 C -0.134 4.134 26 C -0.125 4.125 27 C -0.051 4.051 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.020 0.980 36 H 0.076 0.924 37 H 0.252 0.748 38 H 0.162 0.838 39 H 0.172 0.828 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.363 -24.345 -5.155 30.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.336 5.336 3 C -0.006 4.006 4 C 0.022 3.978 5 H 0.057 0.943 6 C -0.193 4.193 7 C 0.030 3.970 8 N -0.328 5.328 9 C -0.346 4.346 10 H 0.095 0.905 11 C -0.206 4.206 12 N -0.568 5.568 13 Si 0.740 3.260 14 H -0.218 1.218 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.376 3.624 18 O -0.423 6.423 19 C -0.231 4.231 20 C -0.203 4.203 21 C -0.098 4.098 22 N -0.122 5.122 23 C -0.062 4.062 24 C -0.019 4.019 25 C -0.171 4.171 26 C -0.163 4.163 27 C -0.089 4.089 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.105 0.895 35 H 0.038 0.962 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.179 0.821 39 H 0.189 0.811 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.098 0.902 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -16.467 -24.409 -5.270 29.913 hybrid contribution 0.245 1.036 -0.368 1.127 sum -16.222 -23.373 -5.638 29.004 Atomic orbital electron populations 1.22385 0.80675 1.03041 1.01460 1.47525 1.06446 1.06162 1.73454 1.21810 0.97872 0.82432 0.98476 1.22517 0.92792 0.89313 0.93209 0.94301 1.23768 0.99500 0.97478 0.98572 1.22298 1.00048 0.86785 0.87849 1.45966 1.35263 1.30832 1.20710 1.18984 1.07803 1.03528 1.04262 0.90512 1.24772 0.98005 0.99834 0.97972 1.69839 1.21481 1.41500 1.23935 0.86154 0.77912 0.82536 0.79385 1.21819 1.21718 1.20670 1.17344 0.86430 0.82609 0.75972 1.90783 1.13348 1.87244 1.50907 1.20383 0.93688 0.92639 1.16351 1.22434 0.94991 0.94464 1.08416 1.20371 0.87509 0.92007 1.09961 1.43919 1.06576 1.06288 1.55408 1.21644 0.93557 0.87674 1.03336 1.22057 1.00102 0.77377 1.02404 1.21845 0.93558 1.00231 1.01515 1.21633 0.97904 0.95927 1.00804 1.20344 0.91937 0.94447 1.02166 0.92797 0.89710 0.91631 0.88894 0.91793 0.94161 0.89542 0.96225 0.90624 0.93829 0.82114 0.81064 0.90050 0.89262 0.90649 0.89685 0.90686 0.91377 0.90183 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 8.76 59.84 0.52 1.34 16 2 N -0.60 -10.15 2.79 -182.91 -0.51 -10.66 16 3 C 0.12 2.36 5.43 -4.05 -0.02 2.34 16 4 C 0.13 2.90 4.57 -66.86 -0.31 2.60 16 5 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 6 C -0.15 -3.51 7.28 -25.79 -0.19 -3.70 16 7 C 0.16 4.07 7.64 -2.85 -0.02 4.05 16 8 N -0.60 -16.51 3.58 -169.73 -0.61 -17.12 16 9 C -0.22 -6.40 10.51 -15.06 -0.16 -6.56 16 10 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 11 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 12 N -0.92 -28.81 11.32 55.49 0.63 -28.18 16 13 Si 0.91 23.15 29.55 -169.99 -5.02 18.12 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 15 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 C 0.59 10.60 7.25 -12.59 -0.09 10.51 16 18 O -0.54 -11.94 14.91 5.26 0.08 -11.87 16 19 C -0.22 -3.20 6.07 -103.32 -0.63 -3.83 16 20 C -0.18 -2.05 8.75 -37.62 -0.33 -2.38 16 21 C 0.01 0.09 6.53 -81.52 -0.53 -0.44 16 22 N -0.44 -4.35 3.11 -111.87 -0.35 -4.70 16 23 C 0.07 0.91 11.20 -16.87 -0.19 0.72 16 24 C 0.10 0.61 6.89 -3.68 -0.03 0.58 16 25 C -0.13 -0.60 5.91 -26.59 -0.16 -0.75 16 26 C -0.12 -0.58 5.96 -26.46 -0.16 -0.74 16 27 C -0.05 -0.32 6.26 -27.49 -0.17 -0.49 16 28 H 0.05 0.60 7.65 -51.93 -0.40 0.21 16 29 H 0.08 0.88 4.82 -51.93 -0.25 0.63 16 30 H 0.06 0.72 7.89 -51.93 -0.41 0.31 16 31 H 0.09 2.18 7.24 -51.93 -0.38 1.80 16 32 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 33 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 2.12 6.62 -51.93 -0.34 1.78 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 2.18 6.98 -51.93 -0.36 1.82 16 37 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 38 H 0.16 1.53 4.81 -52.49 -0.25 1.28 16 39 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.07 0.34 8.12 -51.93 -0.42 -0.08 16 46 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 368.77 15.07 5.56 5.56 Total: -1.00 -36.63 368.77 -10.20 -46.83 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -7.42 Total: -0.86 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.55 Total: 2.88 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: -0.84 Total: -60.66 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.87 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.63 -10.20 -46.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086007830.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.769 kcal (2) G-P(sol) polarization free energy of solvation -36.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds