Wall clock time and date at job start Tue Mar 31 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 119.99989 * 2 1 4 4 C 1.52993 * 109.47345 * 83.90613 * 3 2 1 5 5 H 1.09004 * 112.96498 * 293.28531 * 4 3 2 6 6 C 1.53949 * 113.77128 * 64.96384 * 4 3 2 7 7 C 1.53950 * 86.28993 * 137.91004 * 6 4 3 8 8 N 1.47588 * 113.77504 * 161.60552 * 4 3 2 9 9 C 1.36939 * 134.48480 * 41.06595 * 8 4 3 10 10 H 1.07997 * 120.00093 * 4.63287 * 9 8 4 11 11 C 1.38812 * 119.99705 * 184.63679 * 9 8 4 12 12 N 1.31621 * 119.99726 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00010 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47066 * 90.00300 * 13 11 9 15 15 H 1.48496 * 109.46952 * 209.99755 * 13 11 9 16 16 H 1.48499 * 109.47241 * 329.99644 * 13 11 9 17 17 C 1.34773 * 120.00087 * 179.97438 * 2 1 3 18 18 O 1.21624 * 120.00281 * 179.85610 * 17 2 1 19 19 C 1.47269 * 119.99675 * 359.85260 * 17 2 1 20 20 C 1.46740 * 126.92498 * 350.55734 * 19 17 2 21 21 C 1.34068 * 106.31218 * 179.85658 * 20 19 17 22 22 N 1.37089 * 109.04202 * 0.43112 * 21 20 19 23 23 C 1.34583 * 109.94510 * 359.69289 * 22 21 20 24 24 C 1.47031 * 123.95595 * 179.63372 * 22 21 20 25 25 C 1.53140 * 108.84326 * 342.49911 * 24 22 21 26 26 C 1.53132 * 109.60141 * 51.17597 * 25 24 22 27 27 C 1.51090 * 126.73106 * 180.20561 * 21 20 19 28 28 H 1.09006 * 109.47023 * 263.77155 * 1 2 3 29 29 H 1.09000 * 109.47594 * 143.76869 * 1 2 3 30 30 H 1.09006 * 109.47075 * 23.76923 * 1 2 3 31 31 H 1.09004 * 109.47116 * 203.90542 * 3 2 1 32 32 H 1.08998 * 109.47045 * 323.90276 * 3 2 1 33 33 H 1.09003 * 113.74283 * 252.25423 * 6 4 3 34 34 H 1.08999 * 113.74009 * 23.45878 * 6 4 3 35 35 H 1.09003 * 113.76489 * 90.69495 * 7 6 4 36 36 H 1.08995 * 113.76557 * 221.97820 * 7 6 4 37 37 H 0.97004 * 119.99523 * 180.02562 * 12 11 9 38 38 H 1.08000 * 126.84293 * 359.97422 * 20 19 17 39 39 H 1.07998 * 125.72257 * 180.02562 * 23 22 21 40 40 H 1.08993 * 109.57641 * 102.30343 * 24 22 21 41 41 H 1.08999 * 109.57624 * 222.69090 * 24 22 21 42 42 H 1.09004 * 109.44914 * 291.13417 * 25 24 22 43 43 H 1.09000 * 109.42834 * 171.20041 * 25 24 22 44 44 H 1.08998 * 109.52501 * 169.93813 * 26 25 24 45 45 H 1.08997 * 109.57968 * 49.76659 * 26 25 24 46 46 H 1.08997 * 109.71874 * 284.17671 * 27 21 20 47 47 H 1.08995 * 109.71735 * 44.82639 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3199 1.7870 1.4343 5 1 1.3608 2.0725 1.8666 6 6 3.1694 0.8863 2.3492 7 6 3.7807 2.1890 2.8964 8 7 3.3779 2.8004 1.6125 9 6 3.8113 3.8740 0.8811 10 1 3.2863 4.1625 -0.0175 11 6 4.9254 4.5913 1.2949 12 7 5.5648 4.2398 2.3903 13 14 5.5162 6.0562 0.2977 14 1 4.8490 7.2894 0.7869 15 1 6.9869 6.1964 0.4478 16 1 5.1825 5.8474 -1.1341 17 6 2.1388 -1.1672 0.0005 18 8 3.3551 -1.1672 -0.0021 19 6 1.4024 -2.4425 0.0044 20 6 -0.0401 -2.6270 0.2004 21 6 -0.2650 -3.9464 0.1225 22 7 0.9251 -4.5908 -0.0962 23 6 1.9262 -3.6943 -0.1681 24 6 1.0572 -6.0493 -0.2272 25 6 -0.2001 -6.7130 0.3418 26 6 -1.4448 -6.0742 -0.2808 27 6 -1.5980 -4.6451 0.2549 28 1 -0.3633 -0.1115 1.0217 29 1 -0.3634 -0.8289 -0.6074 30 1 -0.3633 0.9405 -0.4142 31 1 3.1928 1.1136 -0.4165 32 1 1.6600 1.9985 -0.6054 33 1 2.5857 0.3326 3.0846 34 1 3.8794 0.2588 1.8105 35 1 3.2515 2.5940 3.7590 36 1 4.8595 2.1399 3.0437 37 1 6.3431 4.7413 2.6796 38 1 -0.7745 -1.8538 0.3712 39 1 2.9682 -3.9246 -0.3339 40 1 1.1651 -6.3131 -1.2792 41 1 1.9320 -6.3881 0.3278 42 1 -0.2246 -6.5770 1.4231 43 1 -0.1843 -7.7780 0.1103 44 1 -2.3256 -6.6590 -0.0159 45 1 -1.3379 -6.0473 -1.3652 46 1 -1.8950 -4.6752 1.3032 47 1 -2.3513 -4.1133 -0.3262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086007830.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:11 Heat of formation + Delta-G solvation = 62.500927 kcal Electronic energy + Delta-G solvation = -26794.769359 eV Core-core repulsion = 23172.852633 eV Total energy + Delta-G solvation = -3621.916725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.50103 -40.70984 -39.24721 -36.66656 -36.40468 -34.23692 -33.63790 -31.08814 -29.85016 -29.56027 -28.36220 -27.42035 -25.46123 -25.21892 -24.31455 -22.54713 -22.34299 -20.81095 -20.29847 -19.07963 -18.67938 -17.90497 -17.32914 -17.03671 -16.75773 -16.61180 -16.21684 -15.81620 -15.24848 -15.03808 -14.87114 -14.70878 -14.61275 -14.39467 -14.12942 -13.91556 -13.69782 -13.68342 -13.36815 -13.21161 -12.93099 -12.53860 -12.50009 -12.39499 -12.31695 -12.10625 -11.88448 -11.78726 -11.70261 -11.67310 -11.58591 -11.27312 -10.83306 -10.74507 -9.61354 -9.44435 -9.02358 -8.85267 -7.86308 -5.21132 0.83513 1.43840 1.47731 1.52079 1.55903 1.85941 2.22716 2.52058 2.63135 3.33102 3.44239 3.64284 3.76898 3.85486 3.87130 3.93956 4.10007 4.17559 4.31427 4.37137 4.42287 4.42743 4.48753 4.50576 4.57799 4.63367 4.70745 4.80842 4.85470 4.89117 4.93981 4.95963 5.00440 5.02799 5.09630 5.12362 5.17714 5.25878 5.26782 5.36975 5.54070 5.63436 5.78057 5.87520 5.97105 6.16271 6.39388 6.63522 6.92892 7.41046 7.63514 8.60819 9.30645 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032453 B = 0.002622 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.571497 B =10675.877999 C =10841.917960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.602 5.602 3 C 0.131 3.869 4 C 0.138 3.862 5 H 0.063 0.937 6 C -0.132 4.132 7 C 0.151 3.849 8 N -0.629 5.629 9 C -0.227 4.227 10 H 0.087 0.913 11 C -0.075 4.075 12 N -0.958 5.958 13 Si 0.981 3.019 14 H -0.283 1.283 15 H -0.297 1.297 16 H -0.267 1.267 17 C 0.579 3.421 18 O -0.599 6.599 19 C -0.253 4.253 20 C -0.191 4.191 21 C 0.017 3.983 22 N -0.438 5.438 23 C 0.064 3.936 24 C 0.091 3.909 25 C -0.130 4.130 26 C -0.123 4.123 27 C -0.052 4.052 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.022 0.978 36 H 0.039 0.961 37 H 0.247 0.753 38 H 0.180 0.820 39 H 0.169 0.831 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.849 -26.079 -6.046 33.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.333 5.333 3 C 0.007 3.993 4 C 0.031 3.969 5 H 0.080 0.920 6 C -0.170 4.170 7 C 0.026 3.974 8 N -0.356 5.356 9 C -0.355 4.355 10 H 0.105 0.895 11 C -0.267 4.267 12 N -0.607 5.607 13 Si 0.809 3.191 14 H -0.210 1.210 15 H -0.223 1.223 16 H -0.191 1.191 17 C 0.371 3.629 18 O -0.482 6.482 19 C -0.263 4.263 20 C -0.214 4.214 21 C -0.092 4.092 22 N -0.114 5.114 23 C -0.072 4.072 24 C -0.029 4.029 25 C -0.168 4.168 26 C -0.161 4.161 27 C -0.089 4.089 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.197 0.803 39 H 0.187 0.813 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.127 0.873 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.044 -26.185 -6.179 33.550 hybrid contribution 1.267 1.424 -0.085 1.907 sum -18.778 -24.762 -6.264 31.702 Atomic orbital electron populations 1.22692 0.77395 1.04789 1.03007 1.47561 1.08312 1.04532 1.72932 1.21382 0.96731 0.84406 0.96818 1.22660 0.92356 0.87284 0.94602 0.92003 1.23464 0.98984 0.95916 0.98647 1.22219 0.98147 0.88943 0.88086 1.46307 1.36931 1.31282 1.21088 1.19429 1.07811 1.03671 1.04571 0.89539 1.25708 0.98490 1.03142 0.99375 1.70054 1.21937 1.42898 1.25829 0.85035 0.76696 0.78914 0.78455 1.20995 1.22332 1.19149 1.17966 0.86048 0.83988 0.74888 1.90745 1.15816 1.88068 1.53556 1.20242 0.95406 0.91423 1.19265 1.22605 0.93556 0.95899 1.09297 1.20979 0.88762 0.91824 1.07592 1.44219 1.05968 1.07572 1.53663 1.21683 0.94214 0.88043 1.03299 1.22431 1.01657 0.75137 1.03659 1.21875 0.92489 1.01392 1.01003 1.21655 0.98736 0.95111 1.00598 1.20518 0.89940 0.95249 1.03219 0.91302 0.87728 0.90149 0.93071 0.90073 0.91322 0.91884 0.95974 0.94234 0.94458 0.80348 0.81329 0.88751 0.88476 0.91177 0.87322 0.88677 0.91554 0.89196 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.35 8.76 127.77 1.12 2.47 16 2 N -0.60 -19.97 2.79 -850.86 -2.37 -22.34 16 3 C 0.13 5.30 5.43 86.38 0.47 5.77 16 4 C 0.14 6.13 4.57 45.09 0.21 6.34 16 5 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 6 C -0.13 -6.09 7.28 31.25 0.23 -5.86 16 7 C 0.15 8.22 7.64 86.44 0.66 8.88 16 8 N -0.63 -35.25 3.58 -690.90 -2.48 -37.73 16 9 C -0.23 -13.49 10.51 84.03 0.88 -12.61 16 10 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 11 C -0.07 -4.56 5.50 84.86 0.47 -4.09 16 12 N -0.96 -62.11 11.32 21.65 0.25 -61.87 16 13 Si 0.98 48.45 29.55 68.60 2.03 50.48 16 14 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 15 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 16 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 17 C 0.58 21.41 7.25 86.62 0.63 22.04 16 18 O -0.60 -27.87 14.91 -4.11 -0.06 -27.94 16 19 C -0.25 -7.28 6.07 -19.02 -0.12 -7.40 16 20 C -0.19 -3.96 8.75 23.54 0.21 -3.76 16 21 C 0.02 0.29 6.53 40.91 0.27 0.55 16 22 N -0.44 -7.81 3.11 -507.84 -1.58 -9.39 16 23 C 0.06 1.61 11.20 83.93 0.94 2.55 16 24 C 0.09 0.87 6.89 86.33 0.59 1.47 16 25 C -0.13 -0.71 5.91 30.69 0.18 -0.53 16 26 C -0.12 -0.66 5.96 30.77 0.18 -0.48 16 27 C -0.05 -0.45 6.26 30.10 0.19 -0.26 16 28 H 0.07 1.32 7.65 -2.38 -0.02 1.30 16 29 H 0.10 1.89 4.82 -2.39 -0.01 1.87 16 30 H 0.08 1.52 7.89 -2.38 -0.02 1.50 16 31 H 0.05 2.50 7.24 -2.39 -0.02 2.49 16 32 H 0.08 2.96 7.96 -2.39 -0.02 2.94 16 33 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.06 3.24 6.62 -2.39 -0.02 3.22 16 35 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.04 2.41 6.98 -2.39 -0.02 2.39 16 37 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.18 2.85 4.81 -2.91 -0.01 2.84 16 39 H 0.17 4.13 8.06 -2.91 -0.02 4.10 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.49 8.11 -2.38 -0.02 0.47 16 43 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.07 0.41 8.12 -2.39 -0.02 0.39 16 46 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -83.73 368.77 3.85 -79.88 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 0.96 Total: 13.82 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 7.11 Total: 15.09 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -6.18 Total: -131.33 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.06 Total: -27.94 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.03 Total: 50.48 kcal Total: -83.73 3.85 -79.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086007830.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.377 kcal (2) G-P(sol) polarization free energy of solvation -83.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds