Wall clock time and date at job start Tue Mar 31 2020 11:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99961 * 2 1 4 4 C 1.39044 * 119.99969 * 180.02562 * 2 1 3 5 5 C 1.39221 * 119.92813 * 359.97438 * 4 2 1 6 6 C 1.37613 * 120.06689 * 180.02562 * 5 4 2 7 7 C 1.39799 * 119.92760 * 359.97438 * 6 5 4 8 8 C 1.47524 * 120.06452 * 179.97438 * 7 6 5 9 9 O 1.21590 * 120.00075 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99844 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00366 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47735 * 180.02562 * 11 10 8 13 13 H 1.09002 * 112.84754 * 316.19690 * 12 11 10 14 14 C 1.53785 * 113.61344 * 87.49499 * 12 11 10 15 15 C 1.53788 * 87.07858 * 139.98291 * 14 12 11 16 16 H 1.09005 * 113.68543 * 89.12710 * 15 14 12 17 17 N 1.46496 * 113.61516 * 220.01626 * 15 14 12 18 18 C 1.36934 * 120.00548 * 252.49771 * 17 15 14 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 15 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.53773 * 113.61935 * 184.99535 * 12 11 10 27 27 C 1.39791 * 119.86507 * 0.25251 * 7 6 5 28 28 C 1.37617 * 119.92808 * 359.49140 * 27 7 6 29 29 H 1.09003 * 109.47338 * 269.99761 * 1 2 3 30 30 H 1.09003 * 109.47397 * 29.99558 * 1 2 3 31 31 H 1.08992 * 109.47627 * 149.99498 * 1 2 3 32 32 H 1.08996 * 109.47274 * 240.00203 * 3 2 1 33 33 H 1.09004 * 109.47237 * 0.02562 * 3 2 1 34 34 H 1.09005 * 109.46723 * 120.00148 * 3 2 1 35 35 H 1.08001 * 119.96622 * 0.02562 * 5 4 2 36 36 H 1.08000 * 120.03838 * 180.02562 * 6 5 4 37 37 H 0.96998 * 120.00119 * 0.02562 * 10 8 7 38 38 H 1.09005 * 109.47131 * 59.99416 * 11 10 8 39 39 H 1.09006 * 109.46820 * 299.99982 * 11 10 8 40 40 H 1.09004 * 113.61417 * 25.44067 * 14 12 11 41 41 H 1.09000 * 113.61689 * 254.52839 * 14 12 11 42 42 H 0.96999 * 119.99694 * 72.50295 * 17 15 14 43 43 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 44 44 H 1.08998 * 113.61309 * 105.46495 * 26 12 11 45 45 H 1.09002 * 113.69148 * 334.58322 * 26 12 11 46 46 H 1.07999 * 120.03229 * 179.74102 * 27 7 6 47 47 H 1.08000 * 119.96051 * 180.25523 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1602 -1.2042 -0.0005 5 6 1.4626 -2.4090 -0.0005 6 6 2.1477 -3.6024 -0.0005 7 6 3.5457 -3.6040 -0.0011 8 6 4.2833 -4.8816 -0.0005 9 8 3.6753 -5.9346 0.0000 10 7 5.6310 -4.8817 -0.0016 11 6 6.3636 -6.1503 -0.0016 12 6 7.8678 -5.8709 -0.0022 13 1 8.1512 -5.0809 -0.6978 14 6 8.4627 -5.6975 1.4053 15 6 9.6759 -6.4998 0.9057 16 1 10.4554 -5.8824 0.4591 17 7 10.1974 -7.4498 1.8913 18 6 11.3860 -7.1980 2.5229 19 1 11.9388 -6.2987 2.2946 20 6 11.8804 -8.0984 3.4564 21 7 13.0227 -7.8561 4.0639 22 14 10.9238 -9.6535 3.8518 23 1 9.9872 -9.3870 4.9728 24 1 10.1549 -10.0794 2.6549 25 1 11.8691 -10.7303 4.2419 26 6 8.7299 -7.1383 -0.1249 27 6 4.2432 -2.3926 0.0037 28 6 3.5523 -1.2024 -0.0016 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8898 -0.5139 32 1 2.8241 1.3265 -0.8900 33 1 1.4891 2.0972 0.0005 34 1 2.8241 1.3264 0.8900 35 1 0.3825 -2.4070 -0.0005 36 1 1.6061 -4.5367 -0.0010 37 1 6.1160 -4.0416 -0.0023 38 1 6.0995 -6.7224 -0.8911 39 1 6.1009 -6.7215 0.8890 40 1 7.8947 -6.2050 2.1850 41 1 8.6968 -4.6628 1.6560 42 1 9.7007 -8.2574 2.0966 43 1 13.3679 -8.4852 4.7165 44 1 9.1794 -7.2669 -1.1095 45 1 8.2360 -8.0406 0.2358 46 1 5.3232 -2.3907 0.0075 47 1 4.0907 -0.2662 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086261471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:14 Heat of formation + Delta-G solvation = 34.146576 kcal Electronic energy + Delta-G solvation = -25136.227756 eV Core-core repulsion = 21513.081494 eV Total energy + Delta-G solvation = -3623.146262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.42028 -39.32977 -38.45223 -36.37357 -34.74703 -33.32928 -31.55815 -30.94429 -30.45115 -28.67315 -27.57676 -25.54539 -25.16640 -23.66293 -22.57031 -22.14241 -20.93877 -20.29388 -19.31792 -18.28405 -17.40884 -17.05628 -16.47914 -15.69302 -15.61630 -15.34296 -15.22264 -14.89116 -14.55118 -14.22208 -13.98947 -13.88925 -13.65794 -13.34665 -13.19280 -12.83414 -12.66532 -12.65698 -12.53580 -12.36355 -12.17070 -11.94935 -11.59395 -11.52602 -11.16580 -10.88472 -10.45981 -10.32601 -10.22811 -10.12327 -9.87781 -9.75448 -9.52307 -9.30270 -9.00792 -8.87503 -7.73743 -7.25509 -5.77431 -3.12732 0.83265 1.15400 2.60409 2.84447 3.21630 3.39086 3.42517 3.46829 3.76515 4.37237 4.45435 4.59502 4.62456 4.69009 4.74214 4.79307 4.91483 4.94434 5.01042 5.07069 5.13658 5.15596 5.18079 5.25006 5.30370 5.42201 5.44825 5.67390 5.71028 5.76875 5.82977 5.83822 5.88860 6.00603 6.20634 6.21656 6.23400 6.26584 6.39631 6.47362 6.53940 6.71784 6.72025 6.98726 7.00619 7.53775 7.99140 8.26145 8.42487 9.20499 9.93389 10.13336 11.40769 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023633 B = 0.002018 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.507781 B =13869.061415 C =14310.309528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.632 5.632 3 C 0.092 3.908 4 C 0.236 3.764 5 C -0.209 4.209 6 C -0.010 4.010 7 C -0.195 4.195 8 C 0.560 3.440 9 O -0.549 6.549 10 N -0.724 5.724 11 C 0.133 3.867 12 C -0.127 4.127 13 H 0.091 0.909 14 C -0.160 4.160 15 C 0.171 3.829 16 H 0.084 0.916 17 N -0.737 5.737 18 C -0.247 4.247 19 H 0.091 0.909 20 C 0.004 3.996 21 N -0.933 5.933 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.276 1.276 25 H -0.291 1.291 26 C -0.145 4.145 27 C -0.034 4.034 28 C -0.205 4.205 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.398 0.602 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.362 0.638 43 H 0.259 0.741 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.126 0.874 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.878 19.048 -11.875 34.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.342 5.342 3 C -0.051 4.051 4 C 0.133 3.867 5 C -0.232 4.232 6 C -0.029 4.029 7 C -0.200 4.200 8 C 0.349 3.651 9 O -0.428 6.428 10 N -0.375 5.375 11 C 0.009 3.991 12 C -0.146 4.146 13 H 0.109 0.891 14 C -0.201 4.201 15 C 0.060 3.940 16 H 0.102 0.898 17 N -0.377 5.377 18 C -0.377 4.377 19 H 0.109 0.891 20 C -0.192 4.192 21 N -0.581 5.581 22 Si 0.714 3.286 23 H -0.210 1.210 24 H -0.203 1.203 25 H -0.217 1.217 26 C -0.185 4.185 27 C -0.054 4.054 28 C -0.227 4.227 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.152 0.848 37 H 0.233 0.767 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.196 0.804 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.144 0.856 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -26.133 18.545 -11.771 34.138 hybrid contribution -0.379 -0.596 0.440 0.832 sum -26.512 17.949 -11.330 33.962 Atomic orbital electron populations 1.21741 0.79236 1.02929 1.01513 1.46309 1.05340 1.03437 1.79125 1.21678 0.97181 0.84631 1.01621 1.18010 0.91353 0.85726 0.91646 1.20642 0.99850 0.90698 1.11981 1.20995 0.92686 0.97937 0.91306 1.19695 0.94270 0.92673 1.13390 1.18192 0.82031 0.88863 0.76027 1.90759 1.68345 1.33039 1.50701 1.45945 1.06073 1.10101 1.75378 1.21418 0.90431 0.85108 1.02103 1.22638 0.92224 0.99916 0.99830 0.89122 1.23915 1.00281 1.01242 0.94698 1.21513 0.92082 0.91287 0.89114 0.89835 1.42765 1.24703 1.23169 1.47052 1.19139 0.96179 1.06113 1.16305 0.89149 1.24695 0.96938 0.98475 0.99061 1.69706 1.20223 1.37550 1.30608 0.86552 0.79479 0.84285 0.78253 1.21045 1.20253 1.21713 1.23461 0.97865 0.96566 1.00598 1.21051 0.99400 0.91226 0.93698 1.20549 0.91895 0.98645 1.11625 0.93047 0.91339 0.90999 0.92444 0.90721 0.92385 0.85454 0.84775 0.76655 0.91696 0.91312 0.90417 0.92309 0.80442 0.93056 0.91659 0.90323 0.85619 0.85545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.37 10.14 59.85 0.61 0.97 16 2 N -0.63 -3.98 3.39 -187.56 -0.64 -4.62 16 3 C 0.09 0.38 9.38 59.85 0.56 0.94 16 4 C 0.24 1.98 6.55 -83.86 -0.55 1.43 16 5 C -0.21 -1.83 9.18 -39.44 -0.36 -2.20 16 6 C -0.01 -0.10 9.58 -39.23 -0.38 -0.48 16 7 C -0.20 -2.22 5.88 -104.95 -0.62 -2.83 16 8 C 0.56 7.70 7.76 -12.48 -0.10 7.60 16 9 O -0.55 -9.54 16.34 5.29 0.09 -9.46 16 10 N -0.72 -8.56 5.50 -61.35 -0.34 -8.90 16 11 C 0.13 1.73 5.51 -4.04 -0.02 1.71 16 12 C -0.13 -1.63 3.75 -89.81 -0.34 -1.96 16 13 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 14 C -0.16 -2.54 7.43 -25.91 -0.19 -2.73 16 15 C 0.17 3.18 4.48 -67.12 -0.30 2.88 16 16 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 17 N -0.74 -17.38 5.20 -52.64 -0.27 -17.66 16 18 C -0.25 -6.97 10.45 -15.06 -0.16 -7.13 16 19 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 20 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 21 N -0.93 -29.38 13.97 55.49 0.78 -28.61 16 22 Si 0.88 22.33 27.74 -169.99 -4.71 17.62 16 23 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 C -0.15 -2.18 7.39 -25.93 -0.19 -2.38 16 27 C -0.03 -0.31 9.53 -39.23 -0.37 -0.68 16 28 C -0.20 -1.68 9.28 -39.45 -0.37 -2.05 16 29 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.17 7.92 -51.93 -0.41 -0.24 16 31 H 0.07 0.28 6.17 -51.93 -0.32 -0.04 16 32 H 0.06 0.22 7.93 -51.93 -0.41 -0.19 16 33 H 0.07 0.18 7.79 -51.93 -0.40 -0.23 16 34 H 0.06 0.24 7.94 -51.93 -0.41 -0.17 16 35 H 0.13 0.86 6.11 -52.49 -0.32 0.54 16 36 H 0.13 1.44 7.64 -52.49 -0.40 1.04 16 37 H 0.40 3.69 6.49 -40.82 -0.26 3.43 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.01 7.84 -51.93 -0.41 0.61 16 40 H 0.08 1.33 7.90 -51.93 -0.41 0.92 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.36 8.47 5.78 -40.82 -0.24 8.23 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 46 H 0.13 0.87 6.39 -52.49 -0.34 0.53 16 47 H 0.13 0.80 6.70 -52.49 -0.35 0.45 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -34.99 380.54 -9.47 -44.46 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -7.23 Total: 8.30 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -2.87 Total: -6.87 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.47 Total: -59.78 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.99 -9.47 -44.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086261471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.602 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds