Wall clock time and date at job start Tue Mar 31 2020 11:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46498 * 119.99961 * 2 1 4 4 C 1.39044 * 119.99969 * 180.02562 * 2 1 3 5 5 C 1.39221 * 119.92813 * 359.97438 * 4 2 1 6 6 C 1.37613 * 120.06689 * 180.02562 * 5 4 2 7 7 C 1.39799 * 119.92760 * 359.97438 * 6 5 4 8 8 C 1.47524 * 120.06452 * 179.97438 * 7 6 5 9 9 O 1.21590 * 120.00075 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99844 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00366 * 180.02562 * 10 8 7 12 12 C 1.52993 * 109.47735 * 180.02562 * 11 10 8 13 13 H 1.09002 * 112.84754 * 316.19690 * 12 11 10 14 14 C 1.53785 * 113.61344 * 87.49499 * 12 11 10 15 15 C 1.53788 * 87.07858 * 139.98291 * 14 12 11 16 16 H 1.09005 * 113.68543 * 89.12710 * 15 14 12 17 17 N 1.46496 * 113.61516 * 220.01626 * 15 14 12 18 18 C 1.36934 * 120.00548 * 252.49771 * 17 15 14 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 15 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 15 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 C 1.53773 * 113.61935 * 184.99535 * 12 11 10 27 27 C 1.39791 * 119.86507 * 0.25251 * 7 6 5 28 28 C 1.37617 * 119.92808 * 359.49140 * 27 7 6 29 29 H 1.09003 * 109.47338 * 269.99761 * 1 2 3 30 30 H 1.09003 * 109.47397 * 29.99558 * 1 2 3 31 31 H 1.08992 * 109.47627 * 149.99498 * 1 2 3 32 32 H 1.08996 * 109.47274 * 240.00203 * 3 2 1 33 33 H 1.09004 * 109.47237 * 0.02562 * 3 2 1 34 34 H 1.09005 * 109.46723 * 120.00148 * 3 2 1 35 35 H 1.08001 * 119.96622 * 0.02562 * 5 4 2 36 36 H 1.08000 * 120.03838 * 180.02562 * 6 5 4 37 37 H 0.96998 * 120.00119 * 0.02562 * 10 8 7 38 38 H 1.09005 * 109.47131 * 59.99416 * 11 10 8 39 39 H 1.09006 * 109.46820 * 299.99982 * 11 10 8 40 40 H 1.09004 * 113.61417 * 25.44067 * 14 12 11 41 41 H 1.09000 * 113.61689 * 254.52839 * 14 12 11 42 42 H 0.96999 * 119.99694 * 72.50295 * 17 15 14 43 43 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 44 44 H 1.08998 * 113.61309 * 105.46495 * 26 12 11 45 45 H 1.09002 * 113.69148 * 334.58322 * 26 12 11 46 46 H 1.07999 * 120.03229 * 179.74102 * 27 7 6 47 47 H 1.08000 * 119.96051 * 180.25523 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1602 -1.2042 -0.0005 5 6 1.4626 -2.4090 -0.0005 6 6 2.1477 -3.6024 -0.0005 7 6 3.5457 -3.6040 -0.0011 8 6 4.2833 -4.8816 -0.0005 9 8 3.6753 -5.9346 0.0000 10 7 5.6310 -4.8817 -0.0016 11 6 6.3636 -6.1503 -0.0016 12 6 7.8678 -5.8709 -0.0022 13 1 8.1512 -5.0809 -0.6978 14 6 8.4627 -5.6975 1.4053 15 6 9.6759 -6.4998 0.9057 16 1 10.4554 -5.8824 0.4591 17 7 10.1974 -7.4498 1.8913 18 6 11.3860 -7.1980 2.5229 19 1 11.9388 -6.2987 2.2946 20 6 11.8804 -8.0984 3.4564 21 7 13.0227 -7.8561 4.0639 22 14 10.9238 -9.6535 3.8518 23 1 9.9872 -9.3870 4.9728 24 1 10.1549 -10.0794 2.6549 25 1 11.8691 -10.7303 4.2419 26 6 8.7299 -7.1383 -0.1249 27 6 4.2432 -2.3926 0.0037 28 6 3.5523 -1.2024 -0.0016 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8898 -0.5139 32 1 2.8241 1.3265 -0.8900 33 1 1.4891 2.0972 0.0005 34 1 2.8241 1.3264 0.8900 35 1 0.3825 -2.4070 -0.0005 36 1 1.6061 -4.5367 -0.0010 37 1 6.1160 -4.0416 -0.0023 38 1 6.0995 -6.7224 -0.8911 39 1 6.1009 -6.7215 0.8890 40 1 7.8947 -6.2050 2.1850 41 1 8.6968 -4.6628 1.6560 42 1 9.7007 -8.2574 2.0966 43 1 13.3679 -8.4852 4.7165 44 1 9.1794 -7.2669 -1.1095 45 1 8.2360 -8.0406 0.2358 46 1 5.3232 -2.3907 0.0075 47 1 4.0907 -0.2662 -0.0021 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086261471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:13 Heat of formation + Delta-G solvation = 10.888559 kcal Electronic energy + Delta-G solvation = -25137.236300 eV Core-core repulsion = 21513.081494 eV Total energy + Delta-G solvation = -3624.154806 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.26792 -40.28642 -39.59567 -36.97717 -36.12735 -35.03472 -32.81174 -32.15063 -31.36380 -29.08382 -28.68678 -26.45954 -26.30199 -25.37174 -23.23207 -23.01277 -22.28700 -21.25354 -20.66506 -19.38560 -19.03277 -17.75474 -17.38026 -16.75941 -16.43335 -16.29860 -16.08082 -15.98122 -15.89101 -15.63366 -14.90013 -14.70079 -14.57405 -14.49157 -14.38679 -13.94802 -13.53771 -13.40324 -13.37711 -13.24291 -13.13720 -13.04219 -12.95127 -12.78883 -12.66887 -12.15088 -11.91296 -11.77413 -11.70461 -11.56783 -11.14720 -10.91410 -10.84176 -10.81877 -10.05585 -9.97900 -9.25688 -8.29815 -8.02276 -5.34270 0.07539 0.48755 1.37904 1.40118 1.47275 1.95028 2.16870 2.25554 2.48172 2.99253 3.28246 3.60044 3.71554 3.79343 3.82359 3.96685 3.99822 4.10843 4.17063 4.29227 4.35733 4.38594 4.41380 4.51395 4.57263 4.60383 4.69962 4.77654 4.79174 4.90466 4.92055 4.96843 4.98745 5.04783 5.06788 5.22751 5.23388 5.32507 5.34769 5.45814 5.52093 5.67725 5.76543 5.79093 6.23861 6.25881 6.42774 6.61530 7.08707 7.28354 7.87359 8.04877 9.19182 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023633 B = 0.002018 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.507781 B =13869.061415 C =14310.309528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.632 5.632 3 C 0.085 3.915 4 C 0.236 3.764 5 C -0.214 4.214 6 C -0.023 4.023 7 C -0.222 4.222 8 C 0.557 3.443 9 O -0.596 6.596 10 N -0.713 5.713 11 C 0.138 3.862 12 C -0.097 4.097 13 H 0.121 0.879 14 C -0.155 4.155 15 C 0.146 3.854 16 H 0.080 0.920 17 N -0.745 5.745 18 C -0.230 4.230 19 H 0.061 0.939 20 C -0.066 4.066 21 N -0.984 5.984 22 Si 0.952 3.048 23 H -0.282 1.282 24 H -0.253 1.253 25 H -0.296 1.296 26 C -0.136 4.136 27 C -0.029 4.029 28 C -0.209 4.209 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.143 0.857 36 H 0.122 0.878 37 H 0.413 0.587 38 H 0.066 0.934 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.364 0.636 43 H 0.257 0.743 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.147 0.853 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.863 20.903 -13.250 37.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.340 5.340 3 C -0.057 4.057 4 C 0.130 3.870 5 C -0.237 4.237 6 C -0.043 4.043 7 C -0.227 4.227 8 C 0.347 3.653 9 O -0.479 6.479 10 N -0.364 5.364 11 C 0.014 3.986 12 C -0.116 4.116 13 H 0.139 0.861 14 C -0.195 4.195 15 C 0.037 3.963 16 H 0.098 0.902 17 N -0.385 5.385 18 C -0.361 4.361 19 H 0.079 0.921 20 C -0.258 4.258 21 N -0.634 5.634 22 Si 0.780 3.220 23 H -0.208 1.208 24 H -0.178 1.178 25 H -0.223 1.223 26 C -0.175 4.175 27 C -0.049 4.049 28 C -0.232 4.232 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.161 0.839 36 H 0.140 0.860 37 H 0.250 0.750 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.198 0.802 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.164 0.836 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -28.164 20.480 -13.198 37.240 hybrid contribution 0.174 -0.940 0.814 1.256 sum -27.990 19.540 -12.384 36.313 Atomic orbital electron populations 1.21922 0.78079 1.04015 1.02093 1.46620 1.06341 1.03413 1.77661 1.21870 0.97799 0.84175 1.01906 1.18213 0.91799 0.86421 0.90594 1.20777 1.00699 0.90317 1.11885 1.21016 0.92807 0.98282 0.92166 1.19601 0.94460 0.92345 1.16300 1.18611 0.82389 0.89177 0.75076 1.90724 1.69279 1.34775 1.53118 1.45807 1.05644 1.10357 1.74634 1.21259 0.90483 0.85564 1.01313 1.22475 0.91547 0.99467 0.98108 0.86117 1.23747 0.98647 1.00949 0.96187 1.21940 0.93107 0.91626 0.89607 0.90205 1.42808 1.23416 1.24338 1.47977 1.19142 0.97017 1.04494 1.15462 0.92125 1.25490 0.98220 1.02296 0.99749 1.69880 1.22465 1.39051 1.32044 0.85450 0.78005 0.79870 0.78713 1.20815 1.17751 1.22267 1.23355 0.96901 0.97210 1.00070 1.21243 1.00429 0.90537 0.92673 1.20814 0.92032 0.99186 1.11148 0.92669 0.89326 0.90940 0.91934 0.88736 0.92236 0.83889 0.86049 0.74964 0.91577 0.93218 0.91827 0.91431 0.80247 0.93442 0.89907 0.90650 0.83575 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 10.14 127.77 1.30 1.76 16 2 N -0.63 -6.26 3.39 -747.32 -2.53 -8.79 16 3 C 0.08 0.44 9.38 127.77 1.20 1.64 16 4 C 0.24 3.47 6.55 38.47 0.25 3.73 16 5 C -0.21 -3.55 9.18 22.36 0.21 -3.34 16 6 C -0.02 -0.49 9.58 22.50 0.22 -0.27 16 7 C -0.22 -4.93 5.88 -20.08 -0.12 -5.04 16 8 C 0.56 15.19 7.76 86.69 0.67 15.87 16 9 O -0.60 -21.25 16.34 -4.00 -0.07 -21.31 16 10 N -0.71 -15.75 5.50 -466.28 -2.57 -18.31 16 11 C 0.14 3.36 5.51 86.38 0.48 3.84 16 12 C -0.10 -2.22 3.75 -10.27 -0.04 -2.25 16 13 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 14 C -0.15 -4.63 7.43 31.12 0.23 -4.40 16 15 C 0.15 5.23 4.48 45.52 0.20 5.43 16 16 H 0.08 2.91 8.10 -2.38 -0.02 2.89 16 17 N -0.74 -34.64 5.20 -320.45 -1.67 -36.30 16 18 C -0.23 -13.12 10.45 84.03 0.88 -12.25 16 19 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 20 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 21 N -0.98 -63.60 13.97 21.65 0.30 -63.30 16 22 Si 0.95 46.46 27.74 68.60 1.90 48.37 16 23 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 24 H -0.25 -11.20 6.52 99.48 0.65 -10.55 16 25 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 26 C -0.14 -3.76 7.39 31.12 0.23 -3.53 16 27 C -0.03 -0.47 9.53 22.50 0.21 -0.26 16 28 C -0.21 -2.94 9.28 22.36 0.21 -2.73 16 29 H 0.05 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.09 0.17 7.92 -2.39 -0.02 0.15 16 31 H 0.07 0.41 6.17 -2.39 -0.01 0.40 16 32 H 0.06 0.29 7.93 -2.39 -0.02 0.27 16 33 H 0.09 0.12 7.79 -2.38 -0.02 0.11 16 34 H 0.06 0.32 7.94 -2.38 -0.02 0.30 16 35 H 0.14 1.77 6.11 -2.91 -0.02 1.75 16 36 H 0.12 2.80 7.64 -2.91 -0.02 2.78 16 37 H 0.41 6.56 6.49 -92.71 -0.60 5.95 16 38 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.05 1.43 7.84 -2.38 -0.02 1.41 16 40 H 0.06 2.11 7.90 -2.39 -0.02 2.09 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.36 16.53 5.78 -92.71 -0.54 15.99 16 43 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 44 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 46 H 0.15 1.60 6.39 -2.91 -0.02 1.58 16 47 H 0.15 1.38 6.70 -2.91 -0.02 1.36 16 Total: -1.00 -78.09 380.54 1.75 -76.34 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.21 Total: 28.62 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 6.59 Total: -5.31 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -6.47 Total: -126.71 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.07 Total: -21.31 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.90 Total: 48.37 kcal Total: -78.09 1.75 -76.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086261471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.228 kcal (2) G-P(sol) polarization free energy of solvation -78.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds