Wall clock time and date at job start Tue Mar 31 2020 11:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.39717 * 120.00114 * 179.97438 * 2 1 3 5 5 C 1.39019 * 120.00019 * 0.02562 * 4 2 1 6 6 C 1.38204 * 120.21587 * 180.02562 * 5 4 2 7 7 C 1.38019 * 120.22945 * 0.02562 * 6 5 4 8 8 C 1.39570 * 120.00504 * 359.97400 * 7 6 5 9 9 C 1.47870 * 120.11178 * 180.02562 * 8 7 6 10 10 O 1.21550 * 119.99928 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99614 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99833 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47358 * 180.02562 * 12 11 9 14 14 H 1.09002 * 112.84764 * 45.33434 * 13 12 11 15 15 C 1.53779 * 113.61622 * 176.52767 * 13 12 11 16 16 C 1.53778 * 87.07928 * 139.98117 * 15 13 12 17 17 H 1.09008 * 113.61614 * 220.02003 * 16 15 13 18 18 N 1.46502 * 113.61730 * 89.20073 * 16 15 13 19 19 C 1.36935 * 120.00058 * 154.99449 * 18 16 15 20 20 H 1.08000 * 120.00419 * 0.02562 * 19 18 16 21 21 C 1.38816 * 119.99807 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99781 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00009 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47261 * 89.99663 * 23 21 19 25 25 H 1.48495 * 109.46930 * 209.99758 * 23 21 19 26 26 H 1.48499 * 109.46945 * 329.99850 * 23 21 19 27 27 C 1.53779 * 113.61416 * 274.13678 * 13 12 11 28 28 C 1.38636 * 120.00245 * 179.72952 * 4 2 1 29 29 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 30 30 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 31 31 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 32 32 H 1.09002 * 109.46782 * 359.97438 * 3 2 1 33 33 H 1.09008 * 109.47182 * 119.99477 * 3 2 1 34 34 H 1.08994 * 109.47256 * 239.99753 * 3 2 1 35 35 H 1.08000 * 119.89754 * 0.02562 * 5 4 2 36 36 H 1.08006 * 119.88324 * 179.97438 * 6 5 4 37 37 H 1.08003 * 119.99547 * 179.97438 * 7 6 5 38 38 H 0.97000 * 120.00581 * 0.02562 * 11 9 8 39 39 H 1.09006 * 109.47166 * 299.99898 * 12 11 9 40 40 H 1.08994 * 109.47436 * 59.99888 * 12 11 9 41 41 H 1.08993 * 113.61827 * 254.52844 * 15 13 12 42 42 H 1.09002 * 113.61436 * 25.43721 * 15 13 12 43 43 H 0.96993 * 119.99645 * 335.00307 * 18 16 15 44 44 H 0.97000 * 119.99950 * 180.02562 * 22 21 19 45 45 H 1.09000 * 113.61430 * 334.56728 * 27 13 12 46 46 H 1.09001 * 113.61171 * 105.46428 * 27 13 12 47 47 H 1.08001 * 120.11866 * 359.97423 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1636 -1.2100 0.0005 5 6 1.4685 -2.4139 0.0005 6 6 2.1551 -3.6134 0.0016 7 6 3.5352 -3.6241 0.0032 8 6 4.2425 -2.4209 0.0032 9 6 5.7212 -2.4296 0.0044 10 8 6.3351 -1.3805 0.0048 11 7 6.3881 -3.6007 0.0049 12 6 7.8530 -3.6094 0.0055 13 6 8.3546 -5.0549 0.0053 14 1 7.8265 -5.6861 -0.7094 15 6 9.8852 -5.1759 -0.0794 16 6 9.7723 -6.3227 0.9389 17 1 10.5596 -6.3164 1.6928 18 7 9.5853 -7.6386 0.3227 19 6 9.9687 -8.7693 0.9931 20 1 10.4086 -8.6911 1.9764 21 6 9.7910 -10.0162 0.4094 22 7 10.1591 -11.1030 1.0541 23 14 9.0295 -10.1515 -1.2910 24 1 10.1003 -10.0985 -2.3185 25 1 8.2977 -11.4385 -1.4045 26 1 8.0853 -9.0248 -1.5015 27 6 8.4599 -5.6705 1.4106 28 6 3.5499 -1.2100 -0.0051 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5139 32 1 1.4892 2.0972 -0.0005 33 1 2.8242 1.3265 0.8901 34 1 2.8242 1.3264 -0.8899 35 1 0.3885 -2.4120 -0.0003 36 1 1.6096 -4.5456 0.0020 37 1 4.0679 -4.5636 0.0045 38 1 5.8982 -4.4379 0.0041 39 1 8.2198 -3.0979 -0.8846 40 1 8.2191 -3.0975 0.8954 41 1 10.2446 -5.4947 -1.0578 42 1 10.4141 -4.3029 0.3031 43 1 9.1900 -7.7088 -0.5603 44 1 10.0353 -11.9743 0.6460 45 1 8.5983 -4.9330 2.2011 46 1 7.6701 -6.3880 1.6333 47 1 4.0919 -0.2758 -0.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086541580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:22 Heat of formation + Delta-G solvation = 36.478266 kcal Electronic energy + Delta-G solvation = -25444.868386 eV Core-core repulsion = 21821.823234 eV Total energy + Delta-G solvation = -3623.045153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.44466 -39.29043 -38.48093 -36.38578 -34.77241 -33.25249 -31.61130 -30.78490 -30.31362 -28.72070 -27.48051 -25.18032 -25.14830 -23.97834 -22.99572 -21.73479 -21.63639 -20.20169 -18.75245 -18.14177 -17.64966 -16.50316 -16.36166 -15.89423 -15.61744 -15.51058 -15.31054 -14.92369 -14.43310 -14.23871 -13.97282 -13.88516 -13.57128 -13.52950 -13.07389 -12.86744 -12.67438 -12.64078 -12.54938 -12.45432 -12.04773 -11.86067 -11.57723 -11.36948 -11.33748 -10.92410 -10.51045 -10.30339 -10.20678 -10.16718 -9.89019 -9.67009 -9.53361 -9.25462 -8.99440 -8.91419 -7.66711 -7.31647 -5.81088 -3.17236 0.70767 1.28297 2.69438 2.81144 3.16388 3.33365 3.36591 3.42216 3.75014 4.45582 4.54627 4.55945 4.60434 4.80661 4.82721 4.89991 4.93116 4.95758 5.01365 5.08625 5.17351 5.21564 5.28713 5.33062 5.36972 5.38634 5.44369 5.51508 5.62130 5.75734 5.85188 5.89969 5.94344 6.12662 6.13546 6.21294 6.23310 6.33634 6.44866 6.50235 6.62214 6.74191 6.83992 6.88998 7.08798 7.47459 7.96965 8.15891 8.38629 9.16430 9.88653 10.07983 11.37007 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.002308 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.258453 B =12127.131612 C =13041.278064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.640 5.640 3 C 0.094 3.906 4 C 0.203 3.797 5 C -0.175 4.175 6 C -0.079 4.079 7 C -0.143 4.143 8 C -0.086 4.086 9 C 0.555 3.445 10 O -0.543 6.543 11 N -0.718 5.718 12 C 0.131 3.869 13 C -0.124 4.124 14 H 0.090 0.910 15 C -0.148 4.148 16 C 0.172 3.828 17 H 0.071 0.929 18 N -0.730 5.730 19 C -0.246 4.246 20 H 0.092 0.908 21 C 0.005 3.995 22 N -0.932 5.932 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 C -0.167 4.167 28 C -0.136 4.136 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.402 0.598 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.362 0.638 44 H 0.260 0.740 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.018 23.201 -3.268 30.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.352 5.352 3 C -0.049 4.049 4 C 0.102 3.898 5 C -0.198 4.198 6 C -0.097 4.097 7 C -0.163 4.163 8 C -0.090 4.090 9 C 0.342 3.658 10 O -0.422 6.422 11 N -0.370 5.370 12 C 0.008 3.992 13 C -0.143 4.143 14 H 0.108 0.892 15 C -0.188 4.188 16 C 0.061 3.939 17 H 0.090 0.910 18 N -0.370 5.370 19 C -0.376 4.376 20 H 0.110 0.890 21 C -0.191 4.191 22 N -0.579 5.579 23 Si 0.715 3.285 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.208 4.208 28 C -0.159 4.159 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.143 0.857 38 H 0.238 0.762 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.195 0.805 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -19.537 23.914 -3.099 31.035 hybrid contribution -0.944 -0.642 -1.237 1.683 sum -20.481 23.271 -4.336 31.302 Atomic orbital electron populations 1.21665 0.79424 1.02662 1.01183 1.46307 1.04952 1.03101 1.80854 1.21637 0.97027 0.84601 1.01637 1.17687 0.90866 0.85928 0.95328 1.20861 0.99834 0.91062 1.08021 1.20847 0.93823 0.97541 0.97514 1.21116 0.94539 0.96904 1.03790 1.19699 0.92570 0.93870 1.02828 1.18316 0.87172 0.83855 0.76443 1.90747 1.69631 1.31650 1.50158 1.45985 1.08067 1.08400 1.74509 1.21491 0.78353 0.97371 1.01994 1.22761 0.97635 0.93959 0.99923 0.89224 1.23452 0.93870 1.00127 1.01314 1.21042 0.94738 0.84256 0.93900 0.91041 1.42513 1.74259 1.01413 1.18797 1.19115 1.33948 0.83386 1.01155 0.89022 1.24688 1.01065 0.95301 0.98047 1.69698 1.52904 0.97287 1.38027 0.86555 0.79301 0.76949 0.85720 1.21027 1.21690 1.20379 1.23885 1.02469 0.99905 0.94501 1.20698 0.91687 0.98289 1.05238 0.93365 0.91314 0.91501 0.90838 0.92546 0.92599 0.85680 0.85362 0.85747 0.76216 0.91676 0.91256 0.91407 0.89958 0.80526 0.92990 0.90910 0.91316 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.16 59.85 0.61 1.08 16 2 N -0.64 -5.01 3.41 -187.59 -0.64 -5.65 16 3 C 0.09 0.60 9.40 59.85 0.56 1.16 16 4 C 0.20 2.00 6.55 -83.83 -0.55 1.45 16 5 C -0.18 -1.52 9.20 -39.30 -0.36 -1.88 16 6 C -0.08 -0.69 10.02 -39.67 -0.40 -1.09 16 7 C -0.14 -1.44 9.54 -39.16 -0.37 -1.81 16 8 C -0.09 -1.03 5.87 -104.99 -0.62 -1.65 16 9 C 0.55 7.74 7.77 -12.32 -0.10 7.65 16 10 O -0.54 -9.24 16.35 5.32 0.09 -9.15 16 11 N -0.72 -8.92 5.51 -61.24 -0.34 -9.26 16 12 C 0.13 1.70 5.50 -4.04 -0.02 1.68 16 13 C -0.12 -1.73 3.63 -89.81 -0.33 -2.05 16 14 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 15 C -0.15 -2.19 7.39 -25.92 -0.19 -2.38 16 16 C 0.17 3.18 4.56 -67.03 -0.31 2.87 16 17 H 0.07 1.36 8.10 -51.92 -0.42 0.94 16 18 N -0.73 -16.72 5.11 -52.55 -0.27 -16.99 16 19 C -0.25 -6.82 10.45 -15.06 -0.16 -6.97 16 20 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 22 N -0.93 -28.92 13.97 55.49 0.78 -28.15 16 23 Si 0.88 21.69 27.74 -169.99 -4.71 16.98 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 27 C -0.17 -2.62 7.44 -25.83 -0.19 -2.81 16 28 C -0.14 -1.57 8.85 -38.97 -0.35 -1.91 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.31 6.19 -51.93 -0.32 -0.01 16 31 H 0.07 0.23 7.92 -51.93 -0.41 -0.18 16 32 H 0.07 0.30 7.79 -51.93 -0.40 -0.10 16 33 H 0.06 0.38 7.96 -51.92 -0.41 -0.03 16 34 H 0.06 0.37 7.94 -51.93 -0.41 -0.04 16 35 H 0.13 0.81 6.12 -52.49 -0.32 0.49 16 36 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.12 1.07 6.40 -52.48 -0.34 0.73 16 38 H 0.40 4.30 6.50 -40.82 -0.27 4.04 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.93 7.88 -51.93 -0.41 0.52 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 43 H 0.36 8.12 5.76 -40.82 -0.24 7.89 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.07 1.04 7.92 -51.93 -0.41 0.63 16 46 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 47 H 0.13 1.58 6.32 -52.49 -0.33 1.25 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -33.72 380.68 -9.46 -43.18 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -7.24 Total: 9.95 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.86 Total: -6.64 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.47 Total: -60.05 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.71 Total: 16.98 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.72 -9.46 -43.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086541580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.658 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds