Wall clock time and date at job start Tue Mar 31 2020 11:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.39717 * 120.00114 * 179.97438 * 2 1 3 5 5 C 1.39019 * 120.00019 * 0.02562 * 4 2 1 6 6 C 1.38204 * 120.21587 * 180.02562 * 5 4 2 7 7 C 1.38019 * 120.22945 * 0.02562 * 6 5 4 8 8 C 1.39570 * 120.00504 * 359.97400 * 7 6 5 9 9 C 1.47870 * 120.11178 * 180.02562 * 8 7 6 10 10 O 1.21550 * 119.99928 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99614 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99833 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.47358 * 180.02562 * 12 11 9 14 14 H 1.09002 * 112.84764 * 45.33434 * 13 12 11 15 15 C 1.53779 * 113.61622 * 176.52767 * 13 12 11 16 16 C 1.53778 * 87.07928 * 139.98117 * 15 13 12 17 17 H 1.09008 * 113.61614 * 220.02003 * 16 15 13 18 18 N 1.46502 * 113.61730 * 89.20073 * 16 15 13 19 19 C 1.36935 * 120.00058 * 154.99449 * 18 16 15 20 20 H 1.08000 * 120.00419 * 0.02562 * 19 18 16 21 21 C 1.38816 * 119.99807 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99781 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00009 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47261 * 89.99663 * 23 21 19 25 25 H 1.48495 * 109.46930 * 209.99758 * 23 21 19 26 26 H 1.48499 * 109.46945 * 329.99850 * 23 21 19 27 27 C 1.53779 * 113.61416 * 274.13678 * 13 12 11 28 28 C 1.38636 * 120.00245 * 179.72952 * 4 2 1 29 29 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 30 30 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 31 31 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 32 32 H 1.09002 * 109.46782 * 359.97438 * 3 2 1 33 33 H 1.09008 * 109.47182 * 119.99477 * 3 2 1 34 34 H 1.08994 * 109.47256 * 239.99753 * 3 2 1 35 35 H 1.08000 * 119.89754 * 0.02562 * 5 4 2 36 36 H 1.08006 * 119.88324 * 179.97438 * 6 5 4 37 37 H 1.08003 * 119.99547 * 179.97438 * 7 6 5 38 38 H 0.97000 * 120.00581 * 0.02562 * 11 9 8 39 39 H 1.09006 * 109.47166 * 299.99898 * 12 11 9 40 40 H 1.08994 * 109.47436 * 59.99888 * 12 11 9 41 41 H 1.08993 * 113.61827 * 254.52844 * 15 13 12 42 42 H 1.09002 * 113.61436 * 25.43721 * 15 13 12 43 43 H 0.96993 * 119.99645 * 335.00307 * 18 16 15 44 44 H 0.97000 * 119.99950 * 180.02562 * 22 21 19 45 45 H 1.09000 * 113.61430 * 334.56728 * 27 13 12 46 46 H 1.09001 * 113.61171 * 105.46428 * 27 13 12 47 47 H 1.08001 * 120.11866 * 359.97423 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1636 -1.2100 0.0005 5 6 1.4685 -2.4139 0.0005 6 6 2.1551 -3.6134 0.0016 7 6 3.5352 -3.6241 0.0032 8 6 4.2425 -2.4209 0.0032 9 6 5.7212 -2.4296 0.0044 10 8 6.3351 -1.3805 0.0048 11 7 6.3881 -3.6007 0.0049 12 6 7.8530 -3.6094 0.0055 13 6 8.3546 -5.0549 0.0053 14 1 7.8265 -5.6861 -0.7094 15 6 9.8852 -5.1759 -0.0794 16 6 9.7723 -6.3227 0.9389 17 1 10.5596 -6.3164 1.6928 18 7 9.5853 -7.6386 0.3227 19 6 9.9687 -8.7693 0.9931 20 1 10.4086 -8.6911 1.9764 21 6 9.7910 -10.0162 0.4094 22 7 10.1591 -11.1030 1.0541 23 14 9.0295 -10.1515 -1.2910 24 1 10.1003 -10.0985 -2.3185 25 1 8.2977 -11.4385 -1.4045 26 1 8.0853 -9.0248 -1.5015 27 6 8.4599 -5.6705 1.4106 28 6 3.5499 -1.2100 -0.0051 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5139 32 1 1.4892 2.0972 -0.0005 33 1 2.8242 1.3265 0.8901 34 1 2.8242 1.3264 -0.8899 35 1 0.3885 -2.4120 -0.0003 36 1 1.6096 -4.5456 0.0020 37 1 4.0679 -4.5636 0.0045 38 1 5.8982 -4.4379 0.0041 39 1 8.2198 -3.0979 -0.8846 40 1 8.2191 -3.0975 0.8954 41 1 10.2446 -5.4947 -1.0578 42 1 10.4141 -4.3029 0.3031 43 1 9.1900 -7.7088 -0.5603 44 1 10.0353 -11.9743 0.6460 45 1 8.5983 -4.9330 2.2011 46 1 7.6701 -6.3880 1.6333 47 1 4.0919 -0.2758 -0.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086541580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:21 Heat of formation + Delta-G solvation = 14.548017 kcal Electronic energy + Delta-G solvation = -25445.819353 eV Core-core repulsion = 21821.823234 eV Total energy + Delta-G solvation = -3623.996120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.35799 -40.32838 -39.61079 -37.03331 -36.11310 -34.99009 -32.75825 -32.24966 -31.13005 -29.33253 -28.58017 -26.45589 -25.73693 -25.55787 -24.27763 -22.97682 -22.39574 -21.15354 -20.13276 -19.55019 -19.04314 -17.41748 -17.25379 -16.67733 -16.54834 -16.49097 -16.30898 -16.06577 -15.91558 -15.40663 -15.05798 -14.79095 -14.66327 -14.62761 -14.51993 -14.10028 -13.50014 -13.46824 -13.31815 -13.15229 -13.09825 -13.04079 -13.00399 -12.68931 -12.46984 -12.17719 -12.04904 -11.87138 -11.63920 -11.55900 -11.10569 -10.94826 -10.85901 -10.79224 -10.19227 -9.87611 -9.28567 -8.29159 -8.01564 -5.35222 -0.10569 0.56673 1.38486 1.42769 1.49783 1.87494 2.04875 2.29265 2.49255 2.95101 3.28545 3.52208 3.62217 3.74569 3.86051 3.93129 3.99945 4.10626 4.18367 4.27242 4.28752 4.37280 4.37842 4.48692 4.57509 4.66653 4.71102 4.75975 4.78080 4.85982 4.90038 4.93926 4.96324 4.98180 5.09110 5.21476 5.25303 5.32306 5.37970 5.47455 5.51807 5.54723 5.77841 5.81916 6.23702 6.28922 6.45356 6.50194 7.08916 7.14283 7.85702 8.04611 9.19888 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020886 B = 0.002308 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.258453 B =12127.131612 C =13041.278064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.644 5.644 3 C 0.091 3.909 4 C 0.196 3.804 5 C -0.172 4.172 6 C -0.077 4.077 7 C -0.148 4.148 8 C -0.105 4.105 9 C 0.553 3.447 10 O -0.583 6.583 11 N -0.711 5.711 12 C 0.138 3.862 13 C -0.105 4.105 14 H 0.091 0.909 15 C -0.132 4.132 16 C 0.146 3.854 17 H 0.058 0.942 18 N -0.733 5.733 19 C -0.232 4.232 20 H 0.056 0.944 21 C -0.066 4.066 22 N -0.984 5.984 23 Si 0.956 3.044 24 H -0.280 1.280 25 H -0.297 1.297 26 H -0.247 1.247 27 C -0.155 4.155 28 C -0.157 4.157 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.151 0.849 36 H 0.156 0.844 37 H 0.138 0.862 38 H 0.412 0.588 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.367 0.633 44 H 0.258 0.742 45 H 0.089 0.911 46 H 0.054 0.946 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.653 24.554 -4.757 33.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.356 5.356 3 C -0.052 4.052 4 C 0.094 3.906 5 C -0.195 4.195 6 C -0.096 4.096 7 C -0.169 4.169 8 C -0.109 4.109 9 C 0.342 3.658 10 O -0.464 6.464 11 N -0.362 5.362 12 C 0.015 3.985 13 C -0.124 4.124 14 H 0.109 0.891 15 C -0.172 4.172 16 C 0.036 3.964 17 H 0.076 0.924 18 N -0.375 5.375 19 C -0.363 4.363 20 H 0.074 0.926 21 C -0.258 4.258 22 N -0.635 5.635 23 Si 0.783 3.217 24 H -0.206 1.206 25 H -0.224 1.224 26 H -0.172 1.172 27 C -0.196 4.196 28 C -0.180 4.180 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.155 0.845 38 H 0.249 0.751 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.124 0.876 43 H 0.201 0.799 44 H 0.066 0.934 45 H 0.108 0.892 46 H 0.073 0.927 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.203 25.332 -4.586 33.996 hybrid contribution -0.129 -0.973 -0.651 1.178 sum -22.332 24.358 -5.237 33.459 Atomic orbital electron populations 1.21864 0.77642 1.03962 1.01940 1.46576 1.06158 1.02766 1.80106 1.21708 0.97577 0.85065 1.00839 1.17858 0.90428 0.87333 0.95030 1.21205 1.01136 0.90514 1.06636 1.21200 0.93387 0.98755 0.96232 1.21304 0.95353 0.96558 1.03642 1.19648 0.91449 0.94967 1.04812 1.18664 0.88084 0.83493 0.75589 1.90717 1.70549 1.32962 1.52194 1.45911 1.07895 1.08549 1.73825 1.21366 0.78704 0.96430 1.02051 1.22585 0.97111 0.94334 0.98389 0.89111 1.23353 0.94787 0.98897 1.00115 1.21374 0.96047 0.83665 0.95299 0.92396 1.42425 1.74483 1.01650 1.18900 1.19063 1.32152 0.85183 0.99875 0.92600 1.25537 1.02632 0.94850 1.02748 1.69890 1.55372 0.97872 1.40339 0.85391 0.78788 0.77434 0.80042 1.20635 1.22375 1.17180 1.23740 0.99894 0.99653 0.96276 1.20687 0.92713 0.97724 1.06895 0.92776 0.90536 0.89772 0.88294 0.93489 0.93368 0.83195 0.82656 0.84453 0.75096 0.91478 0.91442 0.91269 0.87552 0.79938 0.93365 0.89212 0.92745 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.16 127.77 1.30 1.95 16 2 N -0.64 -9.11 3.41 -747.40 -2.55 -11.66 16 3 C 0.09 1.09 9.40 127.77 1.20 2.29 16 4 C 0.20 3.61 6.55 38.17 0.25 3.86 16 5 C -0.17 -2.55 9.20 22.45 0.21 -2.35 16 6 C -0.08 -1.14 10.02 22.21 0.22 -0.91 16 7 C -0.15 -2.70 9.54 22.54 0.21 -2.49 16 8 C -0.11 -2.48 5.87 -20.10 -0.12 -2.60 16 9 C 0.55 15.22 7.77 86.79 0.67 15.90 16 10 O -0.58 -20.07 16.35 -3.87 -0.06 -20.14 16 11 N -0.71 -16.55 5.51 -465.95 -2.57 -19.11 16 12 C 0.14 3.29 5.50 86.38 0.47 3.76 16 13 C -0.11 -2.67 3.63 -10.27 -0.04 -2.71 16 14 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 15 C -0.13 -3.59 7.39 31.12 0.23 -3.36 16 16 C 0.15 5.22 4.56 45.57 0.21 5.43 16 17 H 0.06 2.21 8.10 -2.38 -0.02 2.19 16 18 N -0.73 -32.96 5.11 -320.16 -1.64 -34.60 16 19 C -0.23 -13.03 10.45 84.03 0.88 -12.15 16 20 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 21 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 22 N -0.98 -62.83 13.97 21.65 0.30 -62.53 16 23 Si 0.96 44.56 27.74 68.60 1.90 46.46 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 26 H -0.25 -10.16 6.52 99.48 0.65 -9.51 16 27 C -0.16 -4.62 7.44 31.18 0.23 -4.38 16 28 C -0.16 -3.63 8.85 22.67 0.20 -3.43 16 29 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.08 0.45 6.19 -2.39 -0.01 0.43 16 31 H 0.08 0.34 7.92 -2.38 -0.02 0.32 16 32 H 0.10 0.64 7.79 -2.39 -0.02 0.62 16 33 H 0.05 0.64 7.96 -2.38 -0.02 0.62 16 34 H 0.05 0.64 7.94 -2.39 -0.02 0.63 16 35 H 0.15 1.41 6.12 -2.91 -0.02 1.39 16 36 H 0.16 1.41 8.06 -2.91 -0.02 1.38 16 37 H 0.14 2.03 6.40 -2.91 -0.02 2.01 16 38 H 0.41 7.95 6.50 -92.71 -0.60 7.34 16 39 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.07 1.68 7.88 -2.39 -0.02 1.66 16 41 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.11 2.41 8.10 -2.39 -0.02 2.39 16 43 H 0.37 15.66 5.76 -92.71 -0.53 15.13 16 44 H 0.26 15.66 8.31 -92.71 -0.77 14.88 16 45 H 0.09 2.38 7.92 -2.39 -0.02 2.36 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.12 3.00 6.32 -2.91 -0.02 2.98 16 Total: -1.00 -75.21 380.68 1.78 -73.43 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -0.21 Total: 32.73 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: 6.60 Total: -4.58 kcal Atomic # 7 Polarization: -121.45 SS G_CDS: -6.45 Total: -127.90 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.06 Total: -20.14 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.90 Total: 46.46 kcal Total: -75.21 1.78 -73.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086541580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.973 kcal (2) G-P(sol) polarization free energy of solvation -75.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds