Wall clock time and date at job start Tue Mar 31 2020 11:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99748 * 2 1 4 4 C 1.38876 * 111.00138 * 123.95112 * 2 1 3 5 5 C 1.38957 * 120.17689 * 300.02965 * 4 2 1 6 6 C 1.37954 * 120.06304 * 179.97438 * 5 4 2 7 7 C 1.38616 * 120.42035 * 0.02562 * 6 5 4 8 8 C 1.37747 * 120.35390 * 359.71251 * 7 6 5 9 9 C 1.39731 * 119.92313 * 0.56521 * 8 7 6 10 10 C 1.47439 * 120.20304 * 179.72004 * 9 8 7 11 11 O 1.21603 * 119.99891 * 179.72261 * 10 9 8 12 12 N 1.34777 * 120.00153 * 359.72345 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27985 * 12 10 9 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 H 1.09007 * 112.85179 * 314.66356 * 14 13 12 16 16 C 1.53774 * 113.61706 * 85.86090 * 14 13 12 17 17 C 1.53950 * 87.02260 * 139.95506 * 16 14 13 18 18 H 1.09004 * 113.66500 * 220.06861 * 17 16 14 19 19 N 1.46494 * 113.61910 * 89.20079 * 17 16 14 20 20 C 1.36936 * 120.00512 * 107.46611 * 19 17 16 21 21 H 1.08002 * 119.99887 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00327 * 180.02562 * 20 19 17 23 23 N 1.31616 * 119.99958 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00042 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47180 * 60.00464 * 24 22 20 26 26 H 1.48501 * 109.47166 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47488 * 300.00753 * 24 22 20 28 28 C 1.53780 * 113.61549 * 183.47005 * 14 13 12 29 29 H 1.08998 * 109.47293 * 296.04198 * 1 2 3 30 30 H 1.08999 * 109.47241 * 56.04757 * 1 2 3 31 31 H 1.09004 * 109.46735 * 176.04577 * 1 2 3 32 32 H 1.08996 * 109.47250 * 183.95126 * 3 2 1 33 33 H 1.08997 * 109.47089 * 303.95493 * 3 2 1 34 34 H 1.09005 * 109.46877 * 63.95260 * 3 2 1 35 35 H 1.08004 * 119.96576 * 359.94730 * 5 4 2 36 36 H 1.07999 * 119.78530 * 179.97438 * 6 5 4 37 37 H 1.08005 * 119.81677 * 179.97438 * 7 6 5 38 38 H 1.08000 * 120.03287 * 180.30302 * 8 7 6 39 39 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 40 40 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 41 41 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 42 42 H 1.09008 * 113.61525 * 254.53156 * 16 14 13 43 43 H 1.09003 * 113.61877 * 25.43315 * 16 14 13 44 44 H 0.97006 * 119.99716 * 287.47251 * 19 17 16 45 45 H 0.97008 * 120.00205 * 179.97438 * 23 22 20 46 46 H 1.08996 * 113.61539 * 334.56338 * 28 14 13 47 47 H 1.08998 * 113.61536 * 105.46978 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9668 -0.7241 1.0755 5 6 1.6559 -0.3459 2.3759 6 6 2.1511 -1.0672 3.4425 7 6 2.9609 -2.1715 3.2275 8 6 3.2756 -2.5648 1.9455 9 6 2.7867 -1.8414 0.8546 10 6 3.1248 -2.2533 -0.5201 11 8 2.6932 -1.6240 -1.4669 12 7 3.9122 -3.3273 -0.7274 13 6 4.2531 -3.7329 -2.0933 14 6 5.1567 -4.9667 -2.0484 15 1 5.9558 -4.8797 -1.3121 16 6 4.3839 -6.2936 -1.9646 17 6 5.4213 -6.8671 -2.9469 18 1 4.9911 -7.5223 -3.7044 19 7 6.5927 -7.4508 -2.2889 20 6 6.7571 -8.8100 -2.2628 21 1 6.0233 -9.4517 -2.7277 22 6 7.8669 -9.3631 -1.6387 23 7 8.7609 -8.5812 -1.0717 24 14 8.0907 -11.2173 -1.6026 25 1 8.1662 -11.7340 -2.9927 26 1 9.3453 -11.5505 -0.8813 27 1 6.9382 -11.8415 -0.9045 28 6 5.6427 -5.4251 -3.4334 29 1 -0.3634 0.4512 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0827 1.3434 -0.0708 33 1 1.5898 1.9164 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 1.0262 0.5138 2.5518 36 1 1.9070 -0.7690 4.4514 37 1 3.3437 -2.7288 4.0697 38 1 3.9030 -3.4289 1.7839 39 1 4.2568 -3.8291 0.0278 40 1 3.3406 -3.9706 -2.6401 41 1 4.7754 -2.9182 -2.5946 42 1 4.4142 -6.7550 -0.9775 43 1 3.3762 -6.2388 -2.3765 44 1 7.2520 -6.8744 -1.8715 45 1 9.5363 -8.9677 -0.6353 46 1 4.9798 -5.1324 -4.2477 47 1 6.6878 -5.1865 -3.6305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086564471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:30 Heat of formation + Delta-G solvation = 43.575596 kcal Electronic energy + Delta-G solvation = -25975.120552 eV Core-core repulsion = 22352.383162 eV Total energy + Delta-G solvation = -3622.737389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.62233 -39.09126 -38.11752 -36.80761 -34.46256 -33.18511 -31.61325 -30.17128 -30.05488 -27.81624 -27.32782 -25.03573 -24.84401 -24.02184 -23.44560 -21.81604 -21.06935 -20.40387 -18.53859 -17.91809 -17.23370 -16.63553 -16.23728 -15.49138 -15.35640 -15.11003 -14.98835 -14.75253 -14.65107 -14.09929 -13.99216 -13.80937 -13.25621 -13.23032 -12.85586 -12.78718 -12.58227 -12.37124 -12.15367 -12.08799 -11.91845 -11.88093 -11.51205 -11.33875 -11.02290 -10.82503 -10.45331 -10.20185 -10.03518 -9.70175 -9.68006 -9.41963 -9.28485 -9.01864 -8.88712 -8.77118 -8.48728 -6.99730 -5.80645 -3.09526 0.64820 0.96760 2.88838 3.30180 3.42417 3.46919 3.47800 3.60331 3.70029 4.51571 4.55782 4.56271 4.72941 4.86860 5.00359 5.02371 5.06247 5.12885 5.14787 5.27813 5.28191 5.28370 5.37659 5.46168 5.53024 5.64867 5.66032 5.68218 5.76381 5.90736 5.93036 5.99904 6.08342 6.12274 6.16598 6.25209 6.40244 6.42380 6.54131 6.64777 6.68376 6.77142 6.94148 7.06804 7.15636 7.68510 7.69102 8.38702 8.43985 9.49207 10.07183 10.41445 11.41767 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020862 B = 0.002424 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.850779 B =11550.472801 C =12445.684974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.492 5.492 3 C 0.035 3.965 4 C 0.145 3.855 5 C -0.163 4.163 6 C -0.089 4.089 7 C -0.129 4.129 8 C -0.082 4.082 9 C -0.113 4.113 10 C 0.550 3.450 11 O -0.504 6.504 12 N -0.727 5.727 13 C 0.135 3.865 14 C -0.120 4.120 15 H 0.092 0.908 16 C -0.168 4.168 17 C 0.167 3.833 18 H 0.062 0.938 19 N -0.706 5.706 20 C -0.242 4.242 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.148 4.148 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.398 0.602 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.077 0.923 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.254 19.126 7.584 25.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.212 5.212 3 C -0.111 4.111 4 C 0.049 3.951 5 C -0.183 4.183 6 C -0.108 4.108 7 C -0.147 4.147 8 C -0.101 4.101 9 C -0.117 4.117 10 C 0.335 3.665 11 O -0.379 6.379 12 N -0.380 5.380 13 C 0.012 3.988 14 C -0.138 4.138 15 H 0.110 0.890 16 C -0.209 4.209 17 C 0.055 3.945 18 H 0.080 0.920 19 N -0.344 5.344 20 C -0.373 4.373 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.187 4.187 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.044 0.956 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.233 0.767 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.389 19.160 6.378 25.389 hybrid contribution 0.297 -0.644 1.501 1.660 sum -15.092 18.516 7.880 25.153 Atomic orbital electron populations 1.22410 0.85773 1.02696 1.00426 1.59229 1.08005 1.13713 1.40235 1.22389 1.01185 0.87162 1.00383 1.18741 0.94377 0.93137 0.88844 1.21674 1.02360 1.01253 0.93003 1.21187 0.96018 0.94717 0.98834 1.21144 0.99026 0.97495 0.97030 1.21408 0.97937 0.98625 0.92111 1.20089 1.00937 0.96938 0.93708 1.18010 0.79251 0.80667 0.88523 1.90823 1.51432 1.52897 1.42705 1.46048 1.51715 1.30534 1.09701 1.21415 0.98560 0.96491 0.82358 1.22704 0.98435 0.93067 0.99631 0.89004 1.23907 0.98392 0.96155 1.02476 1.21093 0.88809 0.91394 0.93217 0.92013 1.42164 1.22627 1.04425 1.65212 1.19249 1.05084 0.83030 1.29948 0.91058 1.24758 0.97329 0.97881 1.00926 1.69651 1.12996 1.33728 1.41759 0.86246 0.77003 0.85250 0.77555 1.21196 1.21694 1.21236 1.23433 1.01097 0.99019 0.95174 0.95586 0.90753 0.91278 0.91274 0.90761 0.95624 0.85821 0.85681 0.85186 0.85000 0.76747 0.91673 0.91945 0.91578 0.91406 0.78116 0.93402 0.90458 0.91359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.34 60.07 0.56 0.88 16 2 N -0.49 -5.72 2.92 -186.63 -0.54 -6.26 16 3 C 0.04 0.33 9.38 60.07 0.56 0.90 16 4 C 0.14 1.65 4.72 -83.61 -0.39 1.26 16 5 C -0.16 -1.46 8.55 -39.42 -0.34 -1.80 16 6 C -0.09 -0.70 10.03 -39.55 -0.40 -1.10 16 7 C -0.13 -1.07 10.02 -39.62 -0.40 -1.47 16 8 C -0.08 -0.81 9.53 -39.20 -0.37 -1.18 16 9 C -0.11 -1.38 5.89 -104.80 -0.62 -2.00 16 10 C 0.55 7.94 7.76 -12.51 -0.10 7.85 16 11 O -0.50 -8.77 15.03 5.27 0.08 -8.69 16 12 N -0.73 -9.54 5.51 -61.38 -0.34 -9.88 16 13 C 0.13 1.88 5.50 -4.04 -0.02 1.86 16 14 C -0.12 -1.81 3.63 -89.81 -0.33 -2.14 16 15 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 16 C -0.17 -2.82 7.44 -25.83 -0.19 -3.01 16 17 C 0.17 3.26 4.56 -67.03 -0.31 2.96 16 18 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 19 N -0.71 -17.34 5.31 -52.55 -0.28 -17.62 16 20 C -0.24 -6.63 9.97 -15.06 -0.15 -6.78 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 23 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 24 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 C -0.15 -2.39 7.39 -25.92 -0.19 -2.58 16 29 H 0.03 0.20 7.11 -51.93 -0.37 -0.17 16 30 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.63 8.12 -51.93 -0.42 0.20 16 34 H 0.03 0.20 7.33 -51.93 -0.38 -0.18 16 35 H 0.12 0.91 7.01 -52.48 -0.37 0.54 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.13 1.12 6.40 -52.49 -0.34 0.78 16 39 H 0.40 4.55 6.50 -40.82 -0.27 4.29 16 40 H 0.06 0.94 7.88 -51.93 -0.41 0.53 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 43 H 0.07 1.03 7.92 -51.93 -0.41 0.62 16 44 H 0.38 9.98 7.90 -40.82 -0.32 9.66 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 47 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 383.50 15.07 5.78 5.78 Total: -1.00 -32.43 383.50 -9.85 -42.28 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.47 Total: 11.12 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -2.77 Total: -6.82 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.44 Total: -60.77 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.43 -9.85 -42.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086564471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.858 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds