Wall clock time and date at job start Tue Mar 31 2020 11:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46904 * 110.99748 * 2 1 4 4 C 1.38876 * 111.00138 * 123.95112 * 2 1 3 5 5 C 1.38957 * 120.17689 * 300.02965 * 4 2 1 6 6 C 1.37954 * 120.06304 * 179.97438 * 5 4 2 7 7 C 1.38616 * 120.42035 * 0.02562 * 6 5 4 8 8 C 1.37747 * 120.35390 * 359.71251 * 7 6 5 9 9 C 1.39731 * 119.92313 * 0.56521 * 8 7 6 10 10 C 1.47439 * 120.20304 * 179.72004 * 9 8 7 11 11 O 1.21603 * 119.99891 * 179.72261 * 10 9 8 12 12 N 1.34777 * 120.00153 * 359.72345 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27985 * 12 10 9 14 14 C 1.52996 * 109.47059 * 179.72339 * 13 12 10 15 15 H 1.09007 * 112.85179 * 314.66356 * 14 13 12 16 16 C 1.53774 * 113.61706 * 85.86090 * 14 13 12 17 17 C 1.53950 * 87.02260 * 139.95506 * 16 14 13 18 18 H 1.09004 * 113.66500 * 220.06861 * 17 16 14 19 19 N 1.46494 * 113.61910 * 89.20079 * 17 16 14 20 20 C 1.36936 * 120.00512 * 107.46611 * 19 17 16 21 21 H 1.08002 * 119.99887 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00327 * 180.02562 * 20 19 17 23 23 N 1.31616 * 119.99958 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00042 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47180 * 60.00464 * 24 22 20 26 26 H 1.48501 * 109.47166 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47488 * 300.00753 * 24 22 20 28 28 C 1.53780 * 113.61549 * 183.47005 * 14 13 12 29 29 H 1.08998 * 109.47293 * 296.04198 * 1 2 3 30 30 H 1.08999 * 109.47241 * 56.04757 * 1 2 3 31 31 H 1.09004 * 109.46735 * 176.04577 * 1 2 3 32 32 H 1.08996 * 109.47250 * 183.95126 * 3 2 1 33 33 H 1.08997 * 109.47089 * 303.95493 * 3 2 1 34 34 H 1.09005 * 109.46877 * 63.95260 * 3 2 1 35 35 H 1.08004 * 119.96576 * 359.94730 * 5 4 2 36 36 H 1.07999 * 119.78530 * 179.97438 * 6 5 4 37 37 H 1.08005 * 119.81677 * 179.97438 * 7 6 5 38 38 H 1.08000 * 120.03287 * 180.30302 * 8 7 6 39 39 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 40 40 H 1.09004 * 109.46963 * 299.72135 * 13 12 10 41 41 H 1.08994 * 109.47567 * 59.72287 * 13 12 10 42 42 H 1.09008 * 113.61525 * 254.53156 * 16 14 13 43 43 H 1.09003 * 113.61877 * 25.43315 * 16 14 13 44 44 H 0.97006 * 119.99716 * 287.47251 * 19 17 16 45 45 H 0.97008 * 120.00205 * 179.97438 * 23 22 20 46 46 H 1.08996 * 113.61539 * 334.56338 * 28 14 13 47 47 H 1.08998 * 113.61536 * 105.46978 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9668 -0.7241 1.0755 5 6 1.6559 -0.3459 2.3759 6 6 2.1511 -1.0672 3.4425 7 6 2.9609 -2.1715 3.2275 8 6 3.2756 -2.5648 1.9455 9 6 2.7867 -1.8414 0.8546 10 6 3.1248 -2.2533 -0.5201 11 8 2.6932 -1.6240 -1.4669 12 7 3.9122 -3.3273 -0.7274 13 6 4.2531 -3.7329 -2.0933 14 6 5.1567 -4.9667 -2.0484 15 1 5.9558 -4.8797 -1.3121 16 6 4.3839 -6.2936 -1.9646 17 6 5.4213 -6.8671 -2.9469 18 1 4.9911 -7.5223 -3.7044 19 7 6.5927 -7.4508 -2.2889 20 6 6.7571 -8.8100 -2.2628 21 1 6.0233 -9.4517 -2.7277 22 6 7.8669 -9.3631 -1.6387 23 7 8.7609 -8.5812 -1.0717 24 14 8.0907 -11.2173 -1.6026 25 1 8.1662 -11.7340 -2.9927 26 1 9.3453 -11.5505 -0.8813 27 1 6.9382 -11.8415 -0.9045 28 6 5.6427 -5.4251 -3.4334 29 1 -0.3634 0.4512 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0709 32 1 3.0827 1.3434 -0.0708 33 1 1.5898 1.9164 -0.8524 34 1 1.7043 1.8724 0.9233 35 1 1.0262 0.5138 2.5518 36 1 1.9070 -0.7690 4.4514 37 1 3.3437 -2.7288 4.0697 38 1 3.9030 -3.4289 1.7839 39 1 4.2568 -3.8291 0.0278 40 1 3.3406 -3.9706 -2.6401 41 1 4.7754 -2.9182 -2.5946 42 1 4.4142 -6.7550 -0.9775 43 1 3.3762 -6.2388 -2.3765 44 1 7.2520 -6.8744 -1.8715 45 1 9.5363 -8.9677 -0.6353 46 1 4.9798 -5.1324 -4.2477 47 1 6.6878 -5.1865 -3.6305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086564471.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:29 Heat of formation + Delta-G solvation = 23.623031 kcal Electronic energy + Delta-G solvation = -25975.985760 eV Core-core repulsion = 22352.383162 eV Total energy + Delta-G solvation = -3623.602597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48252 -40.31213 -39.32115 -37.53396 -35.89561 -34.88395 -32.57187 -31.80819 -30.87389 -28.64507 -28.52539 -26.42787 -25.90135 -25.41447 -24.58038 -23.11254 -21.90521 -21.39698 -19.89138 -19.35332 -18.79135 -17.44680 -17.21577 -16.71398 -16.43792 -16.23523 -15.99553 -15.92079 -15.60621 -15.46629 -15.35538 -14.73101 -14.60210 -14.56400 -14.21179 -13.70537 -13.49994 -13.27130 -13.25871 -13.04202 -12.91084 -12.87847 -12.76920 -12.67007 -12.59084 -12.20376 -12.19018 -12.04351 -11.51693 -11.46299 -10.99085 -10.86794 -10.69575 -10.09508 -9.88901 -9.68941 -9.23296 -8.99002 -7.94258 -5.22557 -0.12899 0.27934 1.48706 1.51200 1.57286 1.99360 2.26190 2.56762 2.85658 2.89091 3.38054 3.70864 3.76337 3.80393 3.86638 3.94153 4.10806 4.15416 4.18108 4.32383 4.33901 4.34931 4.41970 4.43934 4.57780 4.60274 4.66899 4.74293 4.78846 4.87865 4.93493 4.94077 4.94156 5.00619 5.13016 5.26303 5.31227 5.36913 5.37794 5.45558 5.51546 5.59495 5.67456 5.77263 5.98645 6.29274 6.41387 6.66009 7.34278 7.37135 8.11416 8.34107 9.28836 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020862 B = 0.002424 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.850779 B =11550.472801 C =12445.684974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.520 5.520 3 C 0.038 3.962 4 C 0.131 3.869 5 C -0.164 4.164 6 C -0.079 4.079 7 C -0.131 4.131 8 C -0.086 4.086 9 C -0.144 4.144 10 C 0.548 3.452 11 O -0.542 6.542 12 N -0.722 5.722 13 C 0.145 3.855 14 C -0.102 4.102 15 H 0.081 0.919 16 C -0.153 4.153 17 C 0.145 3.855 18 H 0.060 0.940 19 N -0.719 5.719 20 C -0.243 4.243 21 H 0.076 0.924 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.973 3.027 25 H -0.279 1.279 26 H -0.296 1.296 27 H -0.278 1.278 28 C -0.134 4.134 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.142 0.858 36 H 0.157 0.843 37 H 0.155 0.845 38 H 0.140 0.860 39 H 0.405 0.595 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.089 0.911 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.104 0.896 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.719 19.634 8.842 27.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.241 5.241 3 C -0.108 4.108 4 C 0.035 3.965 5 C -0.184 4.184 6 C -0.098 4.098 7 C -0.148 4.148 8 C -0.105 4.105 9 C -0.148 4.148 10 C 0.335 3.665 11 O -0.419 6.419 12 N -0.376 5.376 13 C 0.022 3.978 14 C -0.121 4.121 15 H 0.099 0.901 16 C -0.193 4.193 17 C 0.035 3.965 18 H 0.078 0.922 19 N -0.358 5.358 20 C -0.375 4.375 21 H 0.094 0.906 22 C -0.267 4.267 23 N -0.619 5.619 24 Si 0.802 3.198 25 H -0.205 1.205 26 H -0.222 1.222 27 H -0.204 1.204 28 C -0.174 4.174 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.160 0.840 36 H 0.175 0.825 37 H 0.173 0.827 38 H 0.157 0.843 39 H 0.242 0.758 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.207 0.793 45 H 0.060 0.940 46 H 0.123 0.877 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.898 19.669 7.625 27.028 hybrid contribution 0.680 -0.754 1.112 1.506 sum -16.217 18.915 8.737 26.403 Atomic orbital electron populations 1.22390 0.84847 1.02074 1.01684 1.59161 1.09077 1.14657 1.41204 1.22361 1.00134 0.86664 1.01624 1.18946 0.94552 0.93100 0.89873 1.21869 1.02484 1.01907 0.92190 1.21596 0.94453 0.93698 1.00019 1.21481 0.98652 0.97741 0.96955 1.21564 0.97901 0.98677 0.92363 1.20079 1.03156 0.98619 0.92909 1.18419 0.78539 0.80185 0.89310 1.90789 1.53009 1.54091 1.44028 1.45992 1.51466 1.30455 1.09641 1.21223 0.98060 0.95599 0.82942 1.22488 0.97876 0.92974 0.98746 0.90098 1.23730 0.98770 0.96146 1.00692 1.21406 0.88186 0.92981 0.93942 0.92220 1.42292 1.24012 1.03578 1.65872 1.19634 1.04725 0.84516 1.28635 0.90613 1.25545 0.97507 1.02092 1.01560 1.69804 1.13547 1.35310 1.43286 0.85225 0.76666 0.80326 0.77624 1.20479 1.22231 1.20405 1.23340 1.01277 0.96246 0.96496 0.93643 0.90183 0.92725 0.92891 0.90183 0.93711 0.84025 0.82529 0.82738 0.84263 0.75810 0.91683 0.92209 0.93253 0.89222 0.79342 0.94003 0.87726 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 9.34 127.69 1.19 1.84 16 2 N -0.52 -11.92 2.92 -744.36 -2.17 -14.09 16 3 C 0.04 0.70 9.38 127.69 1.20 1.90 16 4 C 0.13 2.89 4.72 38.71 0.18 3.07 16 5 C -0.16 -2.58 8.55 22.37 0.19 -2.39 16 6 C -0.08 -0.99 10.03 22.29 0.22 -0.77 16 7 C -0.13 -1.83 10.02 22.24 0.22 -1.61 16 8 C -0.09 -1.60 9.53 22.51 0.21 -1.39 16 9 C -0.14 -3.47 5.89 -19.98 -0.12 -3.59 16 10 C 0.55 15.96 7.76 86.67 0.67 16.63 16 11 O -0.54 -19.22 15.03 -4.04 -0.06 -19.28 16 12 N -0.72 -18.77 5.51 -466.37 -2.57 -21.34 16 13 C 0.15 3.94 5.50 86.38 0.47 4.42 16 14 C -0.10 -3.02 3.63 -10.27 -0.04 -3.05 16 15 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 16 C -0.15 -4.96 7.44 31.18 0.23 -4.73 16 17 C 0.14 5.58 4.56 45.58 0.21 5.79 16 18 H 0.06 2.31 8.10 -2.38 -0.02 2.29 16 19 N -0.72 -35.70 5.31 -320.18 -1.70 -37.40 16 20 C -0.24 -13.38 9.97 84.03 0.84 -12.54 16 21 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 22 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 23 N -0.97 -58.61 13.06 21.65 0.28 -58.32 16 24 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 25 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 27 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 28 C -0.13 -4.20 7.39 31.12 0.23 -3.97 16 29 H 0.05 0.61 7.11 -2.39 -0.02 0.59 16 30 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 31 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 34 H 0.04 0.62 7.33 -2.38 -0.02 0.60 16 35 H 0.14 1.65 7.01 -2.91 -0.02 1.62 16 36 H 0.16 0.98 8.06 -2.91 -0.02 0.95 16 37 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 38 H 0.14 2.23 6.40 -2.91 -0.02 2.21 16 39 H 0.41 9.14 6.50 -92.71 -0.60 8.53 16 40 H 0.06 1.80 7.88 -2.38 -0.02 1.78 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.09 2.55 7.92 -2.39 -0.02 2.53 16 44 H 0.37 19.86 7.90 -92.70 -0.73 19.13 16 45 H 0.25 14.78 8.31 -92.70 -0.77 14.01 16 46 H 0.10 2.73 8.10 -2.39 -0.02 2.71 16 47 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -70.85 383.50 1.84 -69.01 By element: Atomic # 1 Polarization: 38.23 SS G_CDS: -0.36 Total: 37.87 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: 6.39 Total: -4.17 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -6.16 Total: -131.15 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.06 Total: -19.28 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -70.85 1.84 -69.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086564471.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.629 kcal (2) G-P(sol) polarization free energy of solvation -70.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds