Wall clock time and date at job start Tue Mar 31 2020 11:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00230 * 2 1 4 4 C 1.39043 * 119.99905 * 180.02562 * 2 1 3 5 5 C 1.39227 * 119.93333 * 359.97438 * 4 2 1 6 6 C 1.37602 * 120.07276 * 180.02562 * 5 4 2 7 7 C 1.39802 * 119.93032 * 0.02562 * 6 5 4 8 8 C 1.47519 * 120.06840 * 180.02562 * 7 6 5 9 9 O 1.21593 * 120.00072 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99665 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72393 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.53777 * 113.61458 * 274.13836 * 12 11 10 14 14 C 1.53953 * 87.01821 * 220.04891 * 13 12 11 15 15 N 1.46502 * 113.74214 * 139.94477 * 14 13 12 16 16 C 1.36941 * 119.99846 * 107.40074 * 15 14 13 17 17 H 1.07994 * 119.99992 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99872 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99748 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00075 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47238 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47435 * 119.99694 * 20 18 16 23 23 H 1.48509 * 109.46957 * 239.99819 * 20 18 16 24 24 C 1.53770 * 87.11396 * 25.36161 * 14 13 12 25 25 C 1.39797 * 119.85916 * 0.27209 * 7 6 5 26 26 C 1.37610 * 119.93375 * 359.42821 * 25 7 6 27 27 H 1.09000 * 109.47012 * 240.00025 * 1 2 3 28 28 H 1.09001 * 109.47010 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47503 * 119.99883 * 1 2 3 30 30 H 1.08993 * 109.47294 * 270.00355 * 3 2 1 31 31 H 1.09001 * 109.47073 * 30.00315 * 3 2 1 32 32 H 1.08995 * 109.47290 * 149.99888 * 3 2 1 33 33 H 1.08000 * 119.96121 * 0.02562 * 5 4 2 34 34 H 1.07994 * 120.03567 * 180.02562 * 6 5 4 35 35 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 36 36 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 37 37 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 38 38 H 1.09000 * 112.84625 * 45.33109 * 12 11 10 39 39 H 1.09002 * 113.61527 * 334.56570 * 13 12 11 40 40 H 1.09002 * 113.61599 * 105.46552 * 13 12 11 41 41 H 1.09003 * 113.53156 * 270.80479 * 14 13 12 42 42 H 0.96996 * 120.00279 * 287.39849 * 15 14 13 43 43 H 0.97003 * 119.99644 * 180.02562 * 19 18 16 44 44 H 1.09002 * 113.61808 * 220.09392 * 24 14 13 45 45 H 1.08998 * 113.61781 * 89.18885 * 24 14 13 46 46 H 1.08004 * 120.03152 * 179.72194 * 25 7 6 47 47 H 1.07999 * 119.96779 * 180.29668 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2042 -0.0005 5 6 1.4626 -2.4091 -0.0005 6 6 2.1477 -3.6024 -0.0005 7 6 3.5457 -3.6042 0.0000 8 6 4.2833 -4.8817 -0.0006 9 8 3.6753 -5.9347 -0.0010 10 7 5.6310 -4.8817 -0.0006 11 6 6.3635 -6.1504 0.0050 12 6 7.8678 -5.8709 0.0108 13 6 8.4607 -5.6611 -1.3925 14 6 9.6748 -6.4778 -0.9138 15 7 10.1969 -7.4043 -1.9214 16 6 11.3850 -7.1367 -2.5474 17 1 11.9370 -6.2424 -2.2987 18 6 11.8799 -8.0148 -3.5018 19 7 11.2074 -9.1050 -3.8046 20 14 13.5010 -7.6501 -4.3553 21 1 14.0554 -6.3725 -3.8398 22 1 14.4607 -8.7509 -4.0864 23 1 13.2753 -7.5365 -5.8187 24 6 8.7300 -7.1410 0.1022 25 6 4.2432 -2.3926 0.0063 26 6 3.5524 -1.2025 0.0000 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 2.3791 1.5833 -1.0276 31 1 1.6085 2.0283 0.5139 32 1 3.1499 1.1383 0.5138 33 1 0.3826 -2.4071 -0.0005 34 1 1.6060 -4.5367 -0.0010 35 1 6.1161 -4.0417 0.0002 36 1 6.0964 -6.7204 0.8950 37 1 6.1039 -6.7238 -0.8850 38 1 8.1518 -5.0979 0.7249 39 1 7.8917 -6.1483 -2.1843 40 1 8.6943 -4.6203 -1.6167 41 1 10.4540 -5.8701 -0.4535 42 1 9.7010 -8.2074 -2.1451 43 1 11.5534 -9.7188 -4.4712 44 1 9.1806 -7.2931 1.0829 45 1 8.2346 -8.0334 -0.2802 46 1 5.3232 -2.3907 0.0113 47 1 4.0907 -0.2663 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091341442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:47 Heat of formation + Delta-G solvation = 29.800294 kcal Electronic energy + Delta-G solvation = -25077.024168 eV Core-core repulsion = 21453.689437 eV Total energy + Delta-G solvation = -3623.334731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.37483 -39.25528 -38.31957 -36.33939 -34.64001 -33.27426 -31.52141 -30.80323 -30.06009 -28.64404 -27.37454 -25.47938 -25.04560 -23.82406 -22.56067 -22.13636 -20.98265 -20.23287 -19.06580 -18.24404 -17.11457 -16.93061 -16.43327 -15.61911 -15.59547 -15.27208 -15.17181 -14.80253 -14.58785 -14.09622 -13.94627 -13.80910 -13.48020 -13.33986 -13.16325 -12.95950 -12.76053 -12.59215 -12.48282 -12.38265 -11.85525 -11.76864 -11.35697 -11.20235 -11.12987 -10.83848 -10.49329 -10.21411 -10.18958 -10.09000 -9.79920 -9.78456 -9.44784 -9.27199 -8.93601 -8.84680 -7.70819 -6.93962 -5.76582 -3.05255 0.87012 1.18445 2.62755 2.89179 3.28119 3.43576 3.48930 3.51432 3.80627 4.42113 4.45326 4.59833 4.62723 4.72984 4.79152 4.83285 5.02624 5.04583 5.08107 5.09520 5.16413 5.19728 5.25767 5.29254 5.33750 5.49210 5.56252 5.73341 5.86189 5.87775 5.89935 5.96557 6.05234 6.12420 6.25673 6.31957 6.36109 6.40580 6.44032 6.55164 6.63721 6.74510 6.87126 7.01498 7.15177 7.60220 7.71180 8.32303 8.42053 9.53069 10.11928 10.46069 11.45878 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022228 B = 0.001958 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.392520 B =14296.073393 C =14973.214275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.633 5.633 3 C 0.089 3.911 4 C 0.236 3.764 5 C -0.207 4.207 6 C -0.010 4.010 7 C -0.194 4.194 8 C 0.560 3.440 9 O -0.549 6.549 10 N -0.723 5.723 11 C 0.133 3.867 12 C -0.127 4.127 13 C -0.161 4.161 14 C 0.166 3.834 15 N -0.713 5.713 16 C -0.243 4.243 17 H 0.072 0.928 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.142 4.142 25 C -0.035 4.035 26 C -0.207 4.207 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.398 0.602 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.061 0.939 45 H 0.081 0.919 46 H 0.126 0.874 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.535 21.672 11.179 32.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.342 5.342 3 C -0.054 4.054 4 C 0.132 3.868 5 C -0.229 4.229 6 C -0.029 4.029 7 C -0.199 4.199 8 C 0.348 3.652 9 O -0.428 6.428 10 N -0.374 5.374 11 C 0.010 3.990 12 C -0.147 4.147 13 C -0.202 4.202 14 C 0.053 3.947 15 N -0.351 5.351 16 C -0.374 4.374 17 H 0.090 0.910 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.182 4.182 25 C -0.054 4.054 26 C -0.229 4.229 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.233 0.767 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.099 0.901 46 H 0.144 0.856 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.853 21.132 11.092 32.359 hybrid contribution 0.896 0.427 -0.647 1.185 sum -20.957 21.559 10.445 31.829 Atomic orbital electron populations 1.21668 0.79188 1.02629 1.01587 1.46302 1.05342 1.03413 1.79194 1.21739 0.97486 0.84662 1.01520 1.18011 0.91318 0.85747 0.91721 1.20594 0.99802 0.90667 1.11862 1.20999 0.92695 0.97954 0.91272 1.19713 0.94276 0.92714 1.13225 1.18187 0.82062 0.88840 0.76106 1.90762 1.68333 1.33016 1.50664 1.45948 1.06042 1.10138 1.75308 1.21427 0.90482 0.84997 1.02136 1.22638 0.92206 1.00015 0.99795 1.23970 1.00735 1.00776 0.94729 1.21553 0.91847 0.91662 0.89593 1.42422 1.24100 1.24815 1.43730 1.19353 0.97409 1.05048 1.15611 0.91047 1.24777 0.99042 0.97132 1.00082 1.69675 1.39307 1.12949 1.36041 0.86118 0.83462 0.77318 0.79285 1.20552 1.21865 1.21885 1.23434 0.97824 0.96524 1.00376 1.21048 0.99389 0.91227 0.93757 1.20590 0.91938 0.98643 1.11776 0.92483 0.90741 0.92434 0.93043 0.91363 0.90986 0.85600 0.84753 0.76737 0.91768 0.91195 0.89450 0.90336 0.92813 0.90722 0.78057 0.93515 0.92012 0.90088 0.85637 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.40 9.38 59.85 0.56 0.96 16 2 N -0.63 -4.11 3.39 -187.56 -0.64 -4.75 16 3 C 0.09 0.38 10.14 59.84 0.61 0.99 16 4 C 0.24 2.04 6.55 -83.86 -0.55 1.49 16 5 C -0.21 -1.88 9.28 -39.45 -0.37 -2.25 16 6 C -0.01 -0.11 9.58 -39.23 -0.38 -0.48 16 7 C -0.19 -2.28 5.88 -104.95 -0.62 -2.90 16 8 C 0.56 8.00 7.76 -12.48 -0.10 7.90 16 9 O -0.55 -9.86 16.34 5.28 0.09 -9.77 16 10 N -0.72 -9.02 5.51 -61.35 -0.34 -9.36 16 11 C 0.13 1.85 5.50 -4.04 -0.02 1.83 16 12 C -0.13 -1.74 3.75 -89.81 -0.34 -2.08 16 13 C -0.16 -2.70 7.45 -25.83 -0.19 -2.89 16 14 C 0.17 3.23 4.48 -67.03 -0.30 2.93 16 15 N -0.71 -17.95 5.41 -52.55 -0.28 -18.24 16 16 C -0.24 -6.77 9.97 -15.06 -0.15 -6.92 16 17 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 20 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 C -0.14 -2.30 7.40 -25.92 -0.19 -2.49 16 25 C -0.03 -0.32 9.53 -39.23 -0.37 -0.70 16 26 C -0.21 -1.75 9.18 -39.45 -0.36 -2.11 16 27 H 0.06 0.24 7.93 -51.93 -0.41 -0.18 16 28 H 0.07 0.19 7.79 -51.93 -0.40 -0.22 16 29 H 0.06 0.25 7.93 -51.93 -0.41 -0.16 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.18 7.92 -51.93 -0.41 -0.23 16 32 H 0.07 0.29 6.17 -51.93 -0.32 -0.03 16 33 H 0.13 0.90 6.70 -52.49 -0.35 0.55 16 34 H 0.13 1.50 7.64 -52.49 -0.40 1.10 16 35 H 0.40 3.92 6.49 -40.82 -0.26 3.65 16 36 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 37 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.47 7.92 -51.93 -0.41 1.05 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 42 H 0.39 10.36 7.92 -40.82 -0.32 10.03 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.08 1.38 8.08 -51.93 -0.42 0.96 16 46 H 0.13 0.91 6.39 -52.48 -0.34 0.57 16 47 H 0.13 0.81 6.11 -52.49 -0.32 0.49 16 LS Contribution 383.71 15.07 5.78 5.78 Total: -1.00 -34.18 383.71 -9.83 -44.00 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -7.28 Total: 9.80 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.86 Total: -7.23 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -0.53 Total: -60.02 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.18 -9.83 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091341442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.804 kcal (2) G-P(sol) polarization free energy of solvation -34.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds