Wall clock time and date at job start Tue Mar 31 2020 11:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46495 * 120.00230 * 2 1 4 4 C 1.39043 * 119.99905 * 180.02562 * 2 1 3 5 5 C 1.39227 * 119.93333 * 359.97438 * 4 2 1 6 6 C 1.37602 * 120.07276 * 180.02562 * 5 4 2 7 7 C 1.39802 * 119.93032 * 0.02562 * 6 5 4 8 8 C 1.47519 * 120.06840 * 180.02562 * 7 6 5 9 9 O 1.21593 * 120.00072 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99665 * 179.97438 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72393 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.53777 * 113.61458 * 274.13836 * 12 11 10 14 14 C 1.53953 * 87.01821 * 220.04891 * 13 12 11 15 15 N 1.46502 * 113.74214 * 139.94477 * 14 13 12 16 16 C 1.36941 * 119.99846 * 107.40074 * 15 14 13 17 17 H 1.07994 * 119.99992 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99872 * 179.97438 * 16 15 14 19 19 N 1.31618 * 119.99748 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00075 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47238 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47435 * 119.99694 * 20 18 16 23 23 H 1.48509 * 109.46957 * 239.99819 * 20 18 16 24 24 C 1.53770 * 87.11396 * 25.36161 * 14 13 12 25 25 C 1.39797 * 119.85916 * 0.27209 * 7 6 5 26 26 C 1.37610 * 119.93375 * 359.42821 * 25 7 6 27 27 H 1.09000 * 109.47012 * 240.00025 * 1 2 3 28 28 H 1.09001 * 109.47010 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47503 * 119.99883 * 1 2 3 30 30 H 1.08993 * 109.47294 * 270.00355 * 3 2 1 31 31 H 1.09001 * 109.47073 * 30.00315 * 3 2 1 32 32 H 1.08995 * 109.47290 * 149.99888 * 3 2 1 33 33 H 1.08000 * 119.96121 * 0.02562 * 5 4 2 34 34 H 1.07994 * 120.03567 * 180.02562 * 6 5 4 35 35 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 36 36 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 37 37 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 38 38 H 1.09000 * 112.84625 * 45.33109 * 12 11 10 39 39 H 1.09002 * 113.61527 * 334.56570 * 13 12 11 40 40 H 1.09002 * 113.61599 * 105.46552 * 13 12 11 41 41 H 1.09003 * 113.53156 * 270.80479 * 14 13 12 42 42 H 0.96996 * 120.00279 * 287.39849 * 15 14 13 43 43 H 0.97003 * 119.99644 * 180.02562 * 19 18 16 44 44 H 1.09002 * 113.61808 * 220.09392 * 24 14 13 45 45 H 1.08998 * 113.61781 * 89.18885 * 24 14 13 46 46 H 1.08004 * 120.03152 * 179.72194 * 25 7 6 47 47 H 1.07999 * 119.96779 * 180.29668 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1602 -1.2042 -0.0005 5 6 1.4626 -2.4091 -0.0005 6 6 2.1477 -3.6024 -0.0005 7 6 3.5457 -3.6042 0.0000 8 6 4.2833 -4.8817 -0.0006 9 8 3.6753 -5.9347 -0.0010 10 7 5.6310 -4.8817 -0.0006 11 6 6.3635 -6.1504 0.0050 12 6 7.8678 -5.8709 0.0108 13 6 8.4607 -5.6611 -1.3925 14 6 9.6748 -6.4778 -0.9138 15 7 10.1969 -7.4043 -1.9214 16 6 11.3850 -7.1367 -2.5474 17 1 11.9370 -6.2424 -2.2987 18 6 11.8799 -8.0148 -3.5018 19 7 11.2074 -9.1050 -3.8046 20 14 13.5010 -7.6501 -4.3553 21 1 14.0554 -6.3725 -3.8398 22 1 14.4607 -8.7509 -4.0864 23 1 13.2753 -7.5365 -5.8187 24 6 8.7300 -7.1410 0.1022 25 6 4.2432 -2.3926 0.0063 26 6 3.5524 -1.2025 0.0000 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0277 0.0005 29 1 -0.3634 -0.5138 -0.8900 30 1 2.3791 1.5833 -1.0276 31 1 1.6085 2.0283 0.5139 32 1 3.1499 1.1383 0.5138 33 1 0.3826 -2.4071 -0.0005 34 1 1.6060 -4.5367 -0.0010 35 1 6.1161 -4.0417 0.0002 36 1 6.0964 -6.7204 0.8950 37 1 6.1039 -6.7238 -0.8850 38 1 8.1518 -5.0979 0.7249 39 1 7.8917 -6.1483 -2.1843 40 1 8.6943 -4.6203 -1.6167 41 1 10.4540 -5.8701 -0.4535 42 1 9.7010 -8.2074 -2.1451 43 1 11.5534 -9.7188 -4.4712 44 1 9.1806 -7.2931 1.0829 45 1 8.2346 -8.0334 -0.2802 46 1 5.3232 -2.3907 0.0113 47 1 4.0907 -0.2663 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091341442.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:46 Heat of formation + Delta-G solvation = 7.568704 kcal Electronic energy + Delta-G solvation = -25077.988202 eV Core-core repulsion = 21453.689437 eV Total energy + Delta-G solvation = -3624.298765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.26329 -40.24445 -39.55155 -36.97333 -36.05632 -35.01722 -32.38687 -32.05861 -31.29153 -29.05657 -28.57898 -26.44195 -26.32075 -25.58258 -23.24734 -23.03659 -22.30579 -21.19214 -20.44351 -19.19797 -18.90316 -17.75316 -17.36397 -16.71376 -16.48798 -16.28763 -16.02357 -15.96188 -15.84087 -15.46180 -15.07642 -14.81162 -14.56214 -14.43611 -14.34238 -13.50501 -13.46337 -13.40573 -13.31172 -13.21834 -13.01878 -12.96975 -12.90143 -12.79271 -12.65193 -12.14897 -12.04600 -11.77231 -11.58499 -11.53687 -11.10912 -10.89137 -10.83899 -10.78064 -10.06046 -9.97689 -8.96458 -8.29515 -7.93537 -5.21882 0.07614 0.49011 1.47925 1.48862 1.58931 1.95055 2.17131 2.25231 2.57674 2.99379 3.38487 3.71642 3.75917 3.82929 3.87726 3.97230 4.01098 4.17795 4.27305 4.35625 4.37527 4.39846 4.45610 4.51860 4.57716 4.60768 4.69806 4.78116 4.78919 4.90365 4.92354 4.99422 5.00971 5.06614 5.07392 5.23196 5.24041 5.33467 5.38222 5.45217 5.51534 5.55328 5.75143 5.76763 6.26287 6.28881 6.43095 6.62108 7.28750 7.34093 8.12802 8.34461 9.30277 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022228 B = 0.001958 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.392520 B =14296.073393 C =14973.214275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.632 5.632 3 C 0.081 3.919 4 C 0.236 3.764 5 C -0.212 4.212 6 C -0.023 4.023 7 C -0.222 4.222 8 C 0.556 3.444 9 O -0.597 6.597 10 N -0.711 5.711 11 C 0.138 3.862 12 C -0.095 4.095 13 C -0.154 4.154 14 C 0.144 3.856 15 N -0.730 5.730 16 C -0.240 4.240 17 H 0.081 0.919 18 C -0.082 4.082 19 N -0.973 5.973 20 Si 0.974 3.026 21 H -0.262 1.262 22 H -0.295 1.295 23 H -0.296 1.296 24 C -0.137 4.137 25 C -0.029 4.029 26 C -0.210 4.210 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.141 0.859 34 H 0.120 0.880 35 H 0.413 0.587 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.123 0.877 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.147 0.853 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.447 25.504 12.397 35.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.340 5.340 3 C -0.061 4.061 4 C 0.130 3.870 5 C -0.235 4.235 6 C -0.043 4.043 7 C -0.227 4.227 8 C 0.346 3.654 9 O -0.480 6.480 10 N -0.363 5.363 11 C 0.014 3.986 12 C -0.114 4.114 13 C -0.194 4.194 14 C 0.034 3.966 15 N -0.368 5.368 16 C -0.372 4.372 17 H 0.099 0.901 18 C -0.274 4.274 19 N -0.624 5.624 20 Si 0.803 3.197 21 H -0.186 1.186 22 H -0.222 1.222 23 H -0.224 1.224 24 C -0.176 4.176 25 C -0.049 4.049 26 C -0.233 4.233 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.158 0.842 34 H 0.138 0.862 35 H 0.251 0.749 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.141 0.859 39 H 0.072 0.928 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.203 0.797 43 H 0.058 0.942 44 H 0.098 0.902 45 H 0.084 0.916 46 H 0.165 0.835 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.771 25.078 12.354 35.433 hybrid contribution 0.741 -0.600 -0.968 1.358 sum -21.030 24.478 11.386 34.221 Atomic orbital electron populations 1.21849 0.78067 1.04181 1.01677 1.46619 1.06337 1.03407 1.77654 1.21943 0.97960 0.83990 1.02187 1.18215 0.91811 0.86407 0.90571 1.20706 1.00571 0.90327 1.11873 1.21007 0.92819 0.98283 0.92188 1.19594 0.94438 0.92323 1.16343 1.18654 0.82390 0.89239 0.75077 1.90727 1.69292 1.34873 1.53129 1.45782 1.05633 1.10262 1.74620 1.21229 0.90744 0.85574 1.01007 1.22475 0.91335 0.99289 0.98295 1.23751 0.99044 1.00784 0.95849 1.21991 0.93034 0.91922 0.89614 1.42654 1.23622 1.25426 1.45057 1.19794 0.97939 1.04692 1.14784 0.90126 1.25622 1.02708 0.97420 1.01648 1.69842 1.41190 1.14238 1.37126 0.85055 0.79383 0.77581 0.77648 1.18641 1.22216 1.22366 1.23321 0.97283 0.96947 1.00071 1.21246 1.00454 0.90483 0.92667 1.20877 0.92016 0.99249 1.11116 0.92244 0.88534 0.92506 0.92594 0.89439 0.90485 0.84174 0.86183 0.74910 0.91733 0.93755 0.85863 0.92839 0.91139 0.89906 0.79722 0.94169 0.90170 0.91644 0.83497 0.83025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 9.38 127.77 1.20 1.72 16 2 N -0.63 -6.45 3.39 -747.33 -2.53 -8.99 16 3 C 0.08 0.42 10.14 127.77 1.30 1.72 16 4 C 0.24 3.59 6.55 38.47 0.25 3.84 16 5 C -0.21 -3.70 9.28 22.36 0.21 -3.50 16 6 C -0.02 -0.52 9.58 22.50 0.22 -0.31 16 7 C -0.22 -5.17 5.88 -20.07 -0.12 -5.29 16 8 C 0.56 16.10 7.76 86.69 0.67 16.77 16 9 O -0.60 -22.52 16.34 -4.01 -0.07 -22.59 16 10 N -0.71 -17.00 5.51 -466.27 -2.57 -19.56 16 11 C 0.14 3.77 5.50 86.38 0.47 4.24 16 12 C -0.09 -2.39 3.75 -10.27 -0.04 -2.43 16 13 C -0.15 -4.96 7.45 31.18 0.23 -4.73 16 14 C 0.14 5.47 4.48 45.57 0.20 5.67 16 15 N -0.73 -37.22 5.41 -320.18 -1.73 -38.95 16 16 C -0.24 -13.38 9.97 84.03 0.84 -12.54 16 17 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 18 C -0.08 -4.79 5.50 84.86 0.47 -4.32 16 19 N -0.97 -60.90 13.06 21.65 0.28 -60.61 16 20 Si 0.97 46.52 29.55 68.60 2.03 48.55 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 24 C -0.14 -4.27 7.40 31.12 0.23 -4.04 16 25 C -0.03 -0.49 9.53 22.50 0.21 -0.27 16 26 C -0.21 -2.99 9.18 22.36 0.21 -2.79 16 27 H 0.06 0.36 7.93 -2.39 -0.02 0.34 16 28 H 0.10 0.18 7.79 -2.39 -0.02 0.16 16 29 H 0.06 0.38 7.93 -2.39 -0.02 0.36 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.09 0.14 7.92 -2.39 -0.02 0.12 16 32 H 0.08 0.34 6.17 -2.39 -0.01 0.32 16 33 H 0.14 1.90 6.70 -2.91 -0.02 1.88 16 34 H 0.12 2.94 7.64 -2.91 -0.02 2.91 16 35 H 0.41 7.09 6.49 -92.71 -0.60 6.49 16 36 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.04 1.45 7.87 -2.39 -0.02 1.43 16 38 H 0.12 2.35 8.14 -2.39 -0.02 2.34 16 39 H 0.05 2.02 7.92 -2.39 -0.02 2.00 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.08 3.01 8.10 -2.39 -0.02 2.99 16 42 H 0.37 20.65 7.92 -92.71 -0.73 19.92 16 43 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 44 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 46 H 0.15 1.67 6.39 -2.91 -0.02 1.65 16 47 H 0.15 1.36 6.11 -2.91 -0.02 1.35 16 Total: -1.00 -76.46 383.71 1.61 -74.84 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -0.35 Total: 33.55 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 6.55 Total: -6.24 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -6.55 Total: -128.11 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.07 Total: -22.59 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -76.46 1.61 -74.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091341442.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.411 kcal (2) G-P(sol) polarization free energy of solvation -76.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds