Wall clock time and date at job start Tue Mar 31 2020 11:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99589 * 2 1 4 4 C 1.39705 * 120.00328 * 179.97438 * 2 1 3 5 5 C 1.39026 * 120.00425 * 180.02562 * 4 2 1 6 6 C 1.38203 * 120.21855 * 179.97438 * 5 4 2 7 7 C 1.38025 * 120.23059 * 359.74302 * 6 5 4 8 8 C 1.39576 * 120.00124 * 0.50675 * 7 6 5 9 9 C 1.47866 * 120.11100 * 179.76744 * 8 7 6 10 10 O 1.21543 * 120.00073 * 179.72603 * 9 8 7 11 11 N 1.34777 * 119.99816 * 359.72434 * 9 8 7 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47551 * 180.02562 * 12 11 9 14 14 C 1.53781 * 113.61636 * 274.14060 * 13 12 11 15 15 C 1.53959 * 87.02126 * 220.04532 * 14 13 12 16 16 N 1.46504 * 113.53495 * 270.81249 * 15 14 13 17 17 C 1.36932 * 119.99704 * 252.48926 * 16 15 14 18 18 H 1.08000 * 120.00376 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99798 * 180.02562 * 17 16 15 20 20 N 1.31610 * 120.00097 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99885 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46904 * 89.99693 * 21 19 17 23 23 H 1.48490 * 109.47289 * 210.00185 * 21 19 17 24 24 H 1.48501 * 109.47043 * 330.00220 * 21 19 17 25 25 C 1.53776 * 113.61612 * 176.52904 * 13 12 11 26 26 C 1.38638 * 120.00374 * 0.02562 * 4 2 1 27 27 H 1.09000 * 109.47517 * 239.99810 * 1 2 3 28 28 H 1.08997 * 109.47602 * 0.02562 * 1 2 3 29 29 H 1.09009 * 109.46700 * 120.00176 * 1 2 3 30 30 H 1.09004 * 109.47486 * 269.99468 * 3 2 1 31 31 H 1.08996 * 109.47836 * 29.99985 * 3 2 1 32 32 H 1.09004 * 109.47219 * 150.00012 * 3 2 1 33 33 H 1.07999 * 119.89377 * 359.95207 * 5 4 2 34 34 H 1.08003 * 119.88360 * 179.97438 * 6 5 4 35 35 H 1.07998 * 120.00004 * 180.25240 * 7 6 5 36 36 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47024 * 300.00478 * 12 11 9 38 38 H 1.09004 * 109.46875 * 60.00324 * 12 11 9 39 39 H 1.09005 * 112.84727 * 45.33723 * 13 12 11 40 40 H 1.08997 * 113.61207 * 334.56725 * 14 13 12 41 41 H 1.08998 * 113.61494 * 105.46713 * 14 13 12 42 42 H 1.08997 * 113.74534 * 139.93994 * 15 14 13 43 43 H 0.97001 * 119.99682 * 72.49603 * 16 15 14 44 44 H 0.96999 * 119.99820 * 180.02562 * 20 19 17 45 45 H 1.08999 * 113.62106 * 254.52893 * 25 13 12 46 46 H 1.08995 * 113.61568 * 25.43614 * 25 13 12 47 47 H 1.07993 * 120.11105 * 0.04248 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1636 -1.2098 0.0005 5 6 3.5538 -1.2099 0.0011 6 6 4.2494 -2.4041 0.0021 7 6 3.5686 -3.6048 0.0080 8 6 2.1729 -3.6158 0.0023 9 6 1.4412 -4.9007 0.0033 10 8 0.2258 -4.9079 0.0033 11 7 2.1220 -6.0639 0.0043 12 6 1.3972 -7.3369 0.0060 13 6 2.3983 -8.4939 0.0075 14 6 2.8783 -8.8950 -1.3973 15 6 2.7871 -10.3570 -0.9235 16 7 4.0212 -10.8501 -0.3069 17 6 4.8091 -11.7484 -0.9757 18 1 4.5211 -12.0931 -1.9578 19 6 5.9782 -12.2161 -0.3912 20 7 6.3290 -11.7966 0.8059 21 14 7.0535 -13.4410 -1.3039 22 1 8.0508 -12.7086 -2.1250 23 1 7.7583 -14.3068 -0.3247 24 1 6.2060 -14.2814 -2.1876 25 6 1.7378 -9.8798 0.0946 26 6 1.4705 -2.4106 0.0005 27 1 -0.3634 -0.5138 0.8899 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8901 30 1 2.3791 1.5835 -1.0277 31 1 1.6084 2.0284 0.5138 32 1 3.1498 1.1385 0.5138 33 1 4.0921 -0.2736 0.0003 34 1 5.3294 -2.3978 0.0021 35 1 4.1159 -4.5358 0.0130 36 1 3.0920 -6.0581 0.0047 37 1 0.7712 -7.3974 0.8962 38 1 0.7706 -7.3994 -0.8838 39 1 3.2092 -8.3510 0.7218 40 1 2.1701 -8.6473 -2.1880 41 1 3.8944 -8.5701 -1.6209 42 1 2.3881 -11.0380 -1.6752 43 1 4.2800 -10.5404 0.5752 44 1 7.1461 -12.1231 1.2141 45 1 1.8346 -10.3490 1.0737 46 1 0.7173 -9.9020 -0.2874 47 1 0.3906 -2.4128 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091342703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:52 Heat of formation + Delta-G solvation = 32.059925 kcal Electronic energy + Delta-G solvation = -25354.122277 eV Core-core repulsion = 21730.885531 eV Total energy + Delta-G solvation = -3623.236746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.37755 -39.19284 -38.34481 -36.33467 -34.65694 -33.20545 -31.55054 -30.55619 -29.97302 -28.65654 -27.25309 -25.10107 -25.04529 -23.99371 -23.16638 -21.66580 -21.57292 -20.13012 -18.57580 -18.07129 -17.27091 -16.43825 -16.25607 -15.83518 -15.54583 -15.45694 -15.23539 -14.86058 -14.30087 -14.12677 -13.99497 -13.82983 -13.54067 -13.32226 -13.03639 -12.87751 -12.67078 -12.57786 -12.50617 -12.22598 -11.90287 -11.79384 -11.37823 -11.29961 -11.03550 -10.84042 -10.47771 -10.19338 -10.15598 -10.11512 -9.78213 -9.68855 -9.45156 -9.19170 -8.92186 -8.86243 -7.61873 -7.00048 -5.80913 -3.09784 0.76607 1.33819 2.74001 2.87686 3.24682 3.41810 3.47253 3.48812 3.81002 4.51346 4.55718 4.60118 4.66178 4.85408 4.87691 4.98632 5.00873 5.08419 5.13645 5.21178 5.24177 5.25868 5.33459 5.37620 5.42891 5.45656 5.64683 5.66825 5.73371 5.88341 5.94228 5.99472 6.12714 6.19571 6.23255 6.27317 6.38696 6.42352 6.52168 6.61245 6.75900 6.88489 6.91529 7.05473 7.13628 7.56143 7.69043 8.23606 8.38304 9.49000 10.06733 10.41031 11.41511 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.002146 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.273159 B =13042.964460 C =14002.795082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.640 5.640 3 C 0.094 3.906 4 C 0.202 3.798 5 C -0.176 4.176 6 C -0.079 4.079 7 C -0.142 4.142 8 C -0.086 4.086 9 C 0.554 3.446 10 O -0.545 6.545 11 N -0.717 5.717 12 C 0.131 3.869 13 C -0.120 4.120 14 C -0.168 4.168 15 C 0.167 3.833 16 N -0.706 5.706 17 C -0.242 4.242 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C -0.147 4.147 26 C -0.136 4.136 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.403 0.597 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.068 0.932 46 H 0.077 0.923 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.920 25.821 -0.837 27.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.352 5.352 3 C -0.049 4.049 4 C 0.101 3.899 5 C -0.198 4.198 6 C -0.097 4.097 7 C -0.163 4.163 8 C -0.089 4.089 9 C 0.342 3.658 10 O -0.423 6.423 11 N -0.368 5.368 12 C 0.008 3.992 13 C -0.139 4.139 14 C -0.210 4.210 15 C 0.055 3.945 16 N -0.344 5.344 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.187 4.187 26 C -0.159 4.159 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.238 0.762 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.111 0.889 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.087 0.913 46 H 0.096 0.904 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.800 25.793 -0.938 27.608 hybrid contribution 1.258 -0.400 -0.129 1.327 sum -8.542 25.393 -1.067 26.813 Atomic orbital electron populations 1.21632 0.79249 1.02370 1.01632 1.46294 1.05077 1.02953 1.80920 1.21659 0.97308 0.84801 1.01145 1.17683 0.91157 0.85620 0.95400 1.20857 0.91976 0.98897 1.08081 1.20850 0.99876 0.91488 0.97516 1.21136 0.92857 0.98639 1.03637 1.19711 0.93573 0.92903 1.02752 1.18314 0.87139 0.83902 0.76485 1.90740 1.13538 1.87781 1.50281 1.45993 1.10766 1.05731 1.74326 1.21501 0.94654 0.81248 1.01819 1.22713 0.98091 0.93214 0.99855 1.23916 1.00794 1.01750 0.94495 1.21099 0.87577 0.92041 0.93806 1.42171 1.21546 1.50938 1.19762 1.19294 1.01426 1.16879 0.99686 0.90992 1.24765 0.98572 1.00768 0.96828 1.69657 1.25574 1.47619 1.15205 0.86167 0.80539 0.80806 0.78537 1.21696 1.21774 1.20708 1.23436 0.98932 0.94865 1.01477 1.20693 1.00367 0.89592 1.05273 0.92593 0.90870 0.92581 0.93406 0.91532 0.91311 0.85715 0.85354 0.85656 0.76154 0.91728 0.91466 0.88881 0.91394 0.91490 0.91950 0.78111 0.93452 0.91306 0.90449 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 9.40 59.85 0.56 1.19 16 2 N -0.64 -5.22 3.41 -187.59 -0.64 -5.86 16 3 C 0.09 0.50 10.16 59.85 0.61 1.11 16 4 C 0.20 2.07 6.55 -83.83 -0.55 1.52 16 5 C -0.18 -1.59 9.20 -39.30 -0.36 -1.95 16 6 C -0.08 -0.72 10.02 -39.67 -0.40 -1.12 16 7 C -0.14 -1.51 9.54 -39.16 -0.37 -1.88 16 8 C -0.09 -1.08 5.87 -104.99 -0.62 -1.69 16 9 C 0.55 8.08 7.77 -12.32 -0.10 7.98 16 10 O -0.54 -9.58 16.34 5.33 0.09 -9.50 16 11 N -0.72 -9.46 5.51 -61.25 -0.34 -9.80 16 12 C 0.13 1.82 5.50 -4.05 -0.02 1.79 16 13 C -0.12 -1.81 3.62 -89.81 -0.33 -2.13 16 14 C -0.17 -2.81 7.44 -25.82 -0.19 -3.00 16 15 C 0.17 3.25 4.57 -67.02 -0.31 2.94 16 16 N -0.71 -17.29 5.31 -52.54 -0.28 -17.56 16 17 C -0.24 -6.61 9.97 -15.06 -0.15 -6.76 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 21 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 C -0.15 -2.37 7.39 -25.92 -0.19 -2.56 16 26 C -0.14 -1.63 8.85 -38.97 -0.35 -1.97 16 27 H 0.06 0.39 7.95 -51.93 -0.41 -0.02 16 28 H 0.07 0.32 7.79 -51.93 -0.40 -0.08 16 29 H 0.06 0.39 7.95 -51.92 -0.41 -0.02 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.25 7.92 -51.93 -0.41 -0.16 16 32 H 0.07 0.33 6.19 -51.93 -0.32 0.01 16 33 H 0.13 0.85 6.13 -52.49 -0.32 0.53 16 34 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.13 1.16 6.40 -52.49 -0.34 0.82 16 36 H 0.40 4.65 6.50 -40.82 -0.27 4.39 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.96 7.88 -51.93 -0.41 0.55 16 39 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 40 H 0.07 1.03 7.92 -51.93 -0.41 0.61 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 43 H 0.38 9.96 7.90 -40.82 -0.32 9.64 16 44 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 47 H 0.13 1.63 6.32 -52.49 -0.33 1.30 16 LS Contribution 383.79 15.07 5.78 5.78 Total: -1.00 -32.71 383.79 -9.82 -42.53 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -7.28 Total: 11.28 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.85 Total: -7.01 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.53 Total: -60.20 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.71 -9.82 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091342703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.592 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds