Wall clock time and date at job start Tue Mar 31 2020 11:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99589 * 2 1 4 4 C 1.39705 * 120.00328 * 179.97438 * 2 1 3 5 5 C 1.39026 * 120.00425 * 180.02562 * 4 2 1 6 6 C 1.38203 * 120.21855 * 179.97438 * 5 4 2 7 7 C 1.38025 * 120.23059 * 359.74302 * 6 5 4 8 8 C 1.39576 * 120.00124 * 0.50675 * 7 6 5 9 9 C 1.47866 * 120.11100 * 179.76744 * 8 7 6 10 10 O 1.21543 * 120.00073 * 179.72603 * 9 8 7 11 11 N 1.34777 * 119.99816 * 359.72434 * 9 8 7 12 12 C 1.46496 * 120.00258 * 179.97438 * 11 9 8 13 13 C 1.52993 * 109.47551 * 180.02562 * 12 11 9 14 14 C 1.53781 * 113.61636 * 274.14060 * 13 12 11 15 15 C 1.53959 * 87.02126 * 220.04532 * 14 13 12 16 16 N 1.46504 * 113.53495 * 270.81249 * 15 14 13 17 17 C 1.36932 * 119.99704 * 252.48926 * 16 15 14 18 18 H 1.08000 * 120.00376 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99798 * 180.02562 * 17 16 15 20 20 N 1.31610 * 120.00097 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99885 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46904 * 89.99693 * 21 19 17 23 23 H 1.48490 * 109.47289 * 210.00185 * 21 19 17 24 24 H 1.48501 * 109.47043 * 330.00220 * 21 19 17 25 25 C 1.53776 * 113.61612 * 176.52904 * 13 12 11 26 26 C 1.38638 * 120.00374 * 0.02562 * 4 2 1 27 27 H 1.09000 * 109.47517 * 239.99810 * 1 2 3 28 28 H 1.08997 * 109.47602 * 0.02562 * 1 2 3 29 29 H 1.09009 * 109.46700 * 120.00176 * 1 2 3 30 30 H 1.09004 * 109.47486 * 269.99468 * 3 2 1 31 31 H 1.08996 * 109.47836 * 29.99985 * 3 2 1 32 32 H 1.09004 * 109.47219 * 150.00012 * 3 2 1 33 33 H 1.07999 * 119.89377 * 359.95207 * 5 4 2 34 34 H 1.08003 * 119.88360 * 179.97438 * 6 5 4 35 35 H 1.07998 * 120.00004 * 180.25240 * 7 6 5 36 36 H 0.96999 * 120.00047 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47024 * 300.00478 * 12 11 9 38 38 H 1.09004 * 109.46875 * 60.00324 * 12 11 9 39 39 H 1.09005 * 112.84727 * 45.33723 * 13 12 11 40 40 H 1.08997 * 113.61207 * 334.56725 * 14 13 12 41 41 H 1.08998 * 113.61494 * 105.46713 * 14 13 12 42 42 H 1.08997 * 113.74534 * 139.93994 * 15 14 13 43 43 H 0.97001 * 119.99682 * 72.49603 * 16 15 14 44 44 H 0.96999 * 119.99820 * 180.02562 * 20 19 17 45 45 H 1.08999 * 113.62106 * 254.52893 * 25 13 12 46 46 H 1.08995 * 113.61568 * 25.43614 * 25 13 12 47 47 H 1.07993 * 120.11105 * 0.04248 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1636 -1.2098 0.0005 5 6 3.5538 -1.2099 0.0011 6 6 4.2494 -2.4041 0.0021 7 6 3.5686 -3.6048 0.0080 8 6 2.1729 -3.6158 0.0023 9 6 1.4412 -4.9007 0.0033 10 8 0.2258 -4.9079 0.0033 11 7 2.1220 -6.0639 0.0043 12 6 1.3972 -7.3369 0.0060 13 6 2.3983 -8.4939 0.0075 14 6 2.8783 -8.8950 -1.3973 15 6 2.7871 -10.3570 -0.9235 16 7 4.0212 -10.8501 -0.3069 17 6 4.8091 -11.7484 -0.9757 18 1 4.5211 -12.0931 -1.9578 19 6 5.9782 -12.2161 -0.3912 20 7 6.3290 -11.7966 0.8059 21 14 7.0535 -13.4410 -1.3039 22 1 8.0508 -12.7086 -2.1250 23 1 7.7583 -14.3068 -0.3247 24 1 6.2060 -14.2814 -2.1876 25 6 1.7378 -9.8798 0.0946 26 6 1.4705 -2.4106 0.0005 27 1 -0.3634 -0.5138 0.8899 28 1 -0.3634 1.0276 -0.0005 29 1 -0.3633 -0.5139 -0.8901 30 1 2.3791 1.5835 -1.0277 31 1 1.6084 2.0284 0.5138 32 1 3.1498 1.1385 0.5138 33 1 4.0921 -0.2736 0.0003 34 1 5.3294 -2.3978 0.0021 35 1 4.1159 -4.5358 0.0130 36 1 3.0920 -6.0581 0.0047 37 1 0.7712 -7.3974 0.8962 38 1 0.7706 -7.3994 -0.8838 39 1 3.2092 -8.3510 0.7218 40 1 2.1701 -8.6473 -2.1880 41 1 3.8944 -8.5701 -1.6209 42 1 2.3881 -11.0380 -1.6752 43 1 4.2800 -10.5404 0.5752 44 1 7.1461 -12.1231 1.2141 45 1 1.8346 -10.3490 1.0737 46 1 0.7173 -9.9020 -0.2874 47 1 0.3906 -2.4128 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091342703.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:50 Heat of formation + Delta-G solvation = 11.658692 kcal Electronic energy + Delta-G solvation = -25355.006941 eV Core-core repulsion = 21730.885531 eV Total energy + Delta-G solvation = -3624.121410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.34872 -40.27502 -39.57259 -37.02711 -36.04649 -34.97048 -32.46857 -31.97840 -31.07815 -29.28614 -28.47068 -26.42912 -25.77653 -25.72466 -24.35471 -22.92618 -22.38933 -21.13181 -19.85372 -19.37344 -18.95353 -17.41130 -17.20737 -16.69620 -16.55860 -16.46908 -16.30871 -15.96602 -15.73680 -15.65903 -14.92969 -14.73914 -14.71562 -14.60700 -14.48999 -13.77772 -13.49103 -13.40708 -13.25785 -13.13878 -13.04644 -12.92931 -12.90670 -12.62383 -12.46761 -12.15733 -12.06934 -12.03037 -11.55638 -11.46979 -11.09708 -10.90225 -10.85273 -10.75706 -10.18690 -9.87190 -8.98629 -8.28410 -7.94111 -5.22225 -0.10171 0.57062 1.49106 1.50120 1.58636 1.87801 2.05534 2.29986 2.56854 2.95493 3.38314 3.62983 3.73642 3.79412 3.90436 3.93919 4.10756 4.15138 4.19029 4.29402 4.33164 4.38167 4.40991 4.49568 4.58040 4.67379 4.73661 4.76666 4.78471 4.86787 4.90761 4.94035 4.97355 5.00053 5.12108 5.22026 5.27249 5.35482 5.38964 5.48194 5.52262 5.55272 5.66918 5.78159 6.29498 6.29748 6.45918 6.50492 7.14144 7.34611 8.11736 8.34327 9.29081 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022283 B = 0.002146 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.273159 B =13042.964460 C =14002.795082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.644 5.644 3 C 0.088 3.912 4 C 0.196 3.804 5 C -0.172 4.172 6 C -0.077 4.077 7 C -0.149 4.149 8 C -0.105 4.105 9 C 0.553 3.447 10 O -0.583 6.583 11 N -0.710 5.710 12 C 0.139 3.861 13 C -0.103 4.103 14 C -0.153 4.153 15 C 0.144 3.856 16 N -0.719 5.719 17 C -0.242 4.242 18 H 0.076 0.924 19 C -0.076 4.076 20 N -0.968 5.968 21 Si 0.973 3.027 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.270 1.270 25 C -0.134 4.134 26 C -0.156 4.156 27 H 0.047 0.953 28 H 0.099 0.901 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.135 0.865 36 H 0.411 0.589 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.060 0.940 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.058 0.942 46 H 0.105 0.895 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.621 27.516 -1.653 28.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.356 5.356 3 C -0.054 4.054 4 C 0.094 3.906 5 C -0.194 4.194 6 C -0.096 4.096 7 C -0.169 4.169 8 C -0.109 4.109 9 C 0.342 3.658 10 O -0.464 6.464 11 N -0.362 5.362 12 C 0.016 3.984 13 C -0.121 4.121 14 C -0.194 4.194 15 C 0.034 3.966 16 N -0.357 5.357 17 C -0.374 4.374 18 H 0.094 0.906 19 C -0.268 4.268 20 N -0.619 5.619 21 Si 0.802 3.198 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.195 1.195 25 C -0.173 4.173 26 C -0.179 4.179 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.169 0.831 34 H 0.173 0.827 35 H 0.153 0.847 36 H 0.248 0.752 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.207 0.793 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.124 0.876 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.529 27.519 -1.789 29.177 hybrid contribution 1.096 -0.827 0.093 1.376 sum -8.433 26.692 -1.696 28.044 Atomic orbital electron populations 1.21710 0.78830 1.03815 1.00837 1.46569 1.05685 1.03216 1.80106 1.21865 0.97748 0.83835 1.01960 1.17847 0.91897 0.85848 0.95006 1.21203 0.91544 1.00064 1.06606 1.21196 1.01243 0.90877 0.96238 1.21302 0.92044 0.99907 1.03676 1.19644 0.94426 0.91966 1.04843 1.18676 0.86801 0.84774 0.75591 1.90708 1.15132 1.88334 1.52260 1.45928 1.11183 1.05288 1.73756 1.21355 0.94152 0.80988 1.01922 1.22498 0.97777 0.93367 0.98496 1.23741 1.00543 0.99132 0.95977 1.21418 0.86821 0.93316 0.95022 1.42297 1.22978 1.50993 1.19460 1.19669 1.01506 1.16459 0.99733 0.90577 1.25548 1.00246 1.03163 0.97835 1.69806 1.25973 1.49329 1.16778 0.85150 0.78771 0.78623 0.77276 1.21431 1.22344 1.19524 1.23342 0.99364 0.94607 0.99996 1.20678 0.99918 0.90465 1.06874 0.93407 0.88243 0.93475 0.92733 0.89753 0.90556 0.83106 0.82679 0.84678 0.75169 0.91765 0.91265 0.89937 0.89149 0.93187 0.92149 0.79330 0.94038 0.92281 0.87649 0.86224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 9.40 127.77 1.20 2.35 16 2 N -0.64 -9.58 3.41 -747.40 -2.55 -12.12 16 3 C 0.09 0.71 10.16 127.77 1.30 2.00 16 4 C 0.20 3.82 6.55 38.17 0.25 4.07 16 5 C -0.17 -2.72 9.20 22.45 0.21 -2.52 16 6 C -0.08 -1.25 10.02 22.21 0.22 -1.02 16 7 C -0.15 -2.99 9.54 22.54 0.21 -2.78 16 8 C -0.11 -2.65 5.87 -20.10 -0.12 -2.77 16 9 C 0.55 16.28 7.77 86.79 0.67 16.96 16 10 O -0.58 -21.02 16.34 -3.85 -0.06 -21.08 16 11 N -0.71 -18.39 5.51 -465.98 -2.57 -20.96 16 12 C 0.14 3.71 5.50 86.38 0.47 4.19 16 13 C -0.10 -2.98 3.62 -10.27 -0.04 -3.02 16 14 C -0.15 -4.92 7.44 31.18 0.23 -4.69 16 15 C 0.14 5.51 4.57 45.58 0.21 5.72 16 16 N -0.72 -35.47 5.31 -320.14 -1.70 -37.17 16 17 C -0.24 -13.26 9.97 84.04 0.84 -12.42 16 18 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 19 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 20 N -0.97 -58.48 13.06 21.65 0.28 -58.20 16 21 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 22 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 C -0.13 -4.12 7.39 31.12 0.23 -3.89 16 26 C -0.16 -3.79 8.85 22.67 0.20 -3.59 16 27 H 0.05 0.68 7.95 -2.39 -0.02 0.66 16 28 H 0.10 0.69 7.79 -2.39 -0.02 0.67 16 29 H 0.05 0.67 7.95 -2.38 -0.02 0.65 16 30 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.08 0.39 7.92 -2.39 -0.02 0.37 16 32 H 0.08 0.50 6.19 -2.38 -0.01 0.48 16 33 H 0.15 1.54 6.13 -2.91 -0.02 1.53 16 34 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.14 2.33 6.40 -2.91 -0.02 2.31 16 36 H 0.41 9.21 6.50 -92.71 -0.60 8.61 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.07 1.86 7.88 -2.38 -0.02 1.84 16 39 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 40 H 0.09 2.52 7.92 -2.39 -0.02 2.50 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 2.31 8.10 -2.39 -0.02 2.29 16 43 H 0.37 19.76 7.90 -92.71 -0.73 19.03 16 44 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.11 2.68 8.10 -2.39 -0.02 2.66 16 47 H 0.12 3.13 6.32 -2.91 -0.02 3.12 16 Total: -1.00 -71.26 383.79 1.65 -69.61 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: -0.35 Total: 37.43 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 6.56 Total: -5.25 kcal Atomic # 7 Polarization: -121.92 SS G_CDS: -6.53 Total: -128.45 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: -0.06 Total: -21.08 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -71.26 1.65 -69.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091342703.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.267 kcal (2) G-P(sol) polarization free energy of solvation -71.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds