Wall clock time and date at job start Tue Mar 31 2020 11:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28846 * 124.98016 * 2 1 4 4 C 1.32210 * 110.15173 * 180.11613 * 3 2 1 5 5 C 1.47710 * 126.68007 * 179.81191 * 4 3 2 6 6 O 1.21573 * 120.00016 * 179.68800 * 5 4 3 7 7 N 1.34777 * 119.99649 * 359.96380 * 5 4 3 8 8 C 1.46505 * 119.99724 * 179.72300 * 7 5 4 9 9 H 1.09004 * 109.41175 * 324.85640 * 8 7 5 10 10 C 1.52959 * 109.41304 * 84.64859 * 8 7 5 11 11 C 1.53231 * 109.40122 * 183.70217 * 10 8 7 12 12 C 1.51261 * 108.54090 * 305.37464 * 11 10 8 13 13 C 1.37876 * 120.84995 * 231.32828 * 12 11 10 14 14 N 1.31516 * 120.00175 * 180.02562 * 13 12 11 15 15 Si 1.86793 * 120.00083 * 0.02562 * 13 12 11 16 16 H 1.48492 * 109.47518 * 59.99839 * 15 13 12 17 17 H 1.48501 * 109.47424 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47042 * 300.00046 * 15 13 12 19 19 C 1.51267 * 118.30093 * 51.34736 * 12 11 10 20 20 C 1.52958 * 109.41340 * 205.00545 * 8 7 5 21 21 C 1.40493 * 106.64273 * 359.55668 * 4 3 2 22 22 C 1.34319 * 124.98040 * 179.68966 * 2 1 3 23 23 C 1.50712 * 128.90435 * 0.15078 * 22 2 1 24 24 C 1.53397 * 108.33314 * 163.30693 * 23 22 2 25 25 C 1.53108 * 109.64551 * 50.02197 * 24 23 22 26 26 C 1.50372 * 129.43419 * 180.43526 * 21 4 3 27 27 H 1.08997 * 109.47207 * 270.31321 * 1 2 3 28 28 H 1.09007 * 109.46839 * 30.31452 * 1 2 3 29 29 H 1.09001 * 109.47340 * 150.30801 * 1 2 3 30 30 H 0.97000 * 120.00483 * 359.72732 * 7 5 4 31 31 H 1.09000 * 109.47964 * 303.68378 * 10 8 7 32 32 H 1.08994 * 109.48161 * 63.72492 * 10 8 7 33 33 H 1.09002 * 109.62334 * 185.65700 * 11 10 8 34 34 H 1.09008 * 109.78223 * 65.18521 * 11 10 8 35 35 H 0.96994 * 120.00321 * 180.02562 * 14 13 12 36 36 H 1.09000 * 109.62781 * 188.94043 * 19 12 11 37 37 H 1.09004 * 109.78535 * 68.46361 * 19 12 11 38 38 H 1.09002 * 109.47970 * 296.27594 * 20 8 7 39 39 H 1.08995 * 109.48580 * 56.31101 * 20 8 7 40 40 H 1.09001 * 109.69243 * 43.59807 * 23 22 2 41 41 H 1.09001 * 109.72022 * 283.03930 * 23 22 2 42 42 H 1.08993 * 109.44708 * 289.96081 * 24 23 22 43 43 H 1.09006 * 109.41152 * 170.05404 * 24 23 22 44 44 H 1.09002 * 109.46191 * 169.93568 * 25 24 23 45 45 H 1.08993 * 109.46075 * 49.95698 * 25 24 23 46 46 H 1.09005 * 109.70094 * 283.32703 * 26 21 4 47 47 H 1.09000 * 109.70734 * 43.92886 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2036 1.0557 0.0000 4 6 3.4817 0.7173 -0.0025 5 6 4.6378 1.6367 -0.0073 6 8 5.7689 1.1910 -0.0035 7 7 4.4387 2.9697 -0.0102 8 6 5.5854 3.8815 -0.0087 9 1 6.3906 3.4501 0.5860 10 6 6.0708 4.0901 -1.4442 11 6 7.3258 4.9693 -1.4344 12 6 7.0112 6.2484 -0.6907 13 6 7.2849 7.4778 -1.2515 14 7 7.0049 8.5794 -0.5899 15 14 8.0535 7.5790 -2.9510 16 1 7.1581 6.9255 -3.9390 17 1 8.2462 9.0036 -3.3232 18 1 9.3680 6.8882 -2.9416 19 6 6.3889 6.1441 0.6841 20 6 5.1679 5.2224 0.5975 21 6 3.5262 -0.6869 0.0062 22 6 2.2350 -1.1005 0.0060 23 6 1.8166 -2.5484 0.0107 24 6 3.0236 -3.4007 -0.4016 25 6 4.2436 -3.0036 0.4338 26 6 4.7172 -1.6047 0.0165 27 1 -0.3633 0.0056 1.0276 28 1 -0.3633 0.8872 -0.5188 29 1 -0.3634 -0.8927 -0.5090 30 1 3.5362 3.3253 -0.0132 31 1 6.3067 3.1247 -1.8920 32 1 5.2889 4.5792 -2.0249 33 1 7.6169 5.2033 -2.4584 34 1 8.1396 4.4451 -0.9332 35 1 7.1972 9.4444 -0.9845 36 1 6.0779 7.1329 1.0211 37 1 7.1121 5.7288 1.3859 38 1 4.4072 5.6847 -0.0316 39 1 4.7637 5.0595 1.5966 40 1 1.0022 -2.6978 -0.6982 41 1 1.4900 -2.8336 1.0108 42 1 3.2385 -3.2384 -1.4577 43 1 2.7971 -4.4539 -0.2352 44 1 5.0460 -3.7228 0.2694 45 1 3.9737 -2.9957 1.4898 46 1 5.1567 -1.6477 -0.9802 47 1 5.4567 -1.2393 0.7291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153551826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:51 Heat of formation + Delta-G solvation = 10.661788 kcal Electronic energy + Delta-G solvation = -26844.884267 eV Core-core repulsion = 23220.719628 eV Total energy + Delta-G solvation = -3624.164639 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.89538 -39.15648 -37.15332 -36.61361 -33.89582 -33.55766 -31.49777 -30.52498 -29.95479 -29.59612 -27.99357 -26.63785 -24.03321 -23.14073 -22.13009 -21.64234 -21.32671 -19.75392 -19.35946 -18.97028 -17.34067 -16.63561 -16.37998 -15.80147 -15.40057 -14.92296 -14.49293 -14.33441 -14.00350 -13.95861 -13.82040 -13.60069 -13.24168 -13.04351 -12.97389 -12.76148 -12.66529 -12.21236 -12.12983 -11.99428 -11.55487 -11.17127 -11.04343 -10.94165 -10.86243 -10.74274 -10.69992 -10.62993 -10.14536 -9.96932 -9.71920 -9.58332 -9.15389 -8.93105 -8.77777 -8.63241 -8.43189 -8.22236 -6.06265 -3.96540 1.64006 2.07375 2.31663 3.33591 3.39451 3.42224 3.63419 3.72786 4.17760 4.25670 4.43321 4.55763 4.58168 4.74586 4.85377 4.93835 4.99988 5.10450 5.19616 5.22061 5.30435 5.36397 5.43808 5.65352 5.74526 5.80910 5.90001 5.94331 5.97883 6.16253 6.22353 6.28432 6.46856 6.55492 6.57127 6.70101 6.79043 6.85892 6.96165 7.03495 7.12613 7.31649 7.49095 7.69457 7.76038 7.77057 7.86532 8.12310 8.42853 8.66440 9.00416 9.59005 11.03511 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.002885 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.497896 B = 9702.317403 C =10192.914118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.279 5.279 3 N -0.268 5.268 4 C -0.002 4.002 5 C 0.597 3.403 6 O -0.534 6.534 7 N -0.710 5.710 8 C 0.155 3.845 9 H 0.080 0.920 10 C -0.113 4.113 11 C -0.008 4.008 12 C -0.489 4.489 13 C 0.076 3.924 14 N -0.892 5.892 15 Si 0.891 3.109 16 H -0.274 1.274 17 H -0.293 1.293 18 H -0.274 1.274 19 C 0.014 3.986 20 C -0.114 4.114 21 C -0.144 4.144 22 C 0.001 3.999 23 C -0.043 4.043 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.042 4.042 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.399 0.601 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.025 0.975 34 H 0.021 0.979 35 H 0.264 0.736 36 H 0.060 0.940 37 H 0.007 0.993 38 H 0.054 0.946 39 H 0.036 0.964 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.075 0.925 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.968 -22.697 1.456 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.065 5.065 3 N -0.103 5.103 4 C -0.161 4.161 5 C 0.381 3.619 6 O -0.410 6.410 7 N -0.359 5.359 8 C 0.052 3.948 9 H 0.098 0.902 10 C -0.152 4.152 11 C -0.046 4.046 12 C -0.508 4.508 13 C -0.126 4.126 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.200 1.200 17 H -0.219 1.219 18 H -0.200 1.200 19 C -0.024 4.024 20 C -0.152 4.152 21 C -0.154 4.154 22 C -0.124 4.124 23 C -0.082 4.082 24 C -0.152 4.152 25 C -0.158 4.158 26 C -0.080 4.080 27 H 0.102 0.898 28 H 0.115 0.885 29 H 0.111 0.889 30 H 0.233 0.767 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.025 0.975 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.093 0.907 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.990 -21.835 1.459 26.525 hybrid contribution 0.108 -0.188 -1.009 1.032 sum -14.882 -22.022 0.450 26.583 Atomic orbital electron populations 1.22120 0.73625 1.05264 1.04322 1.44988 1.07366 1.02768 1.51416 1.73835 1.02815 1.13112 1.20564 1.21798 0.90924 0.93716 1.09683 1.16892 0.86327 0.81830 0.76876 1.90764 1.22498 1.76944 1.50749 1.46287 1.11193 1.05262 1.73184 1.21082 0.86818 0.88968 0.97916 0.90228 1.21903 1.00024 0.98334 0.94982 1.19592 0.93232 0.95480 0.96326 1.20049 1.39895 0.89406 1.01412 1.24827 0.95076 0.95250 0.97471 1.69820 1.47420 0.97607 1.38077 0.86650 0.80259 0.76347 0.84792 1.20019 1.21932 1.19959 1.19333 0.91390 0.96020 0.95679 1.21930 1.01317 0.94497 0.97503 1.19891 0.94522 0.92580 1.08437 1.21057 0.90782 0.91077 1.09532 1.20175 0.98824 0.86949 1.02236 1.21561 0.94210 0.98680 1.00770 1.21667 0.97456 0.96834 0.99856 1.19974 0.93880 0.91447 1.02707 0.89803 0.88465 0.88927 0.76670 0.94352 0.93033 0.95692 0.96048 0.92569 0.92102 0.97506 0.92698 0.94557 0.90654 0.90170 0.91325 0.91035 0.91202 0.91802 0.90658 0.89681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 11.17 59.84 0.67 1.18 16 2 N -0.28 -3.12 3.69 -63.96 -0.24 -3.36 16 3 N -0.27 -3.90 11.71 33.28 0.39 -3.51 16 4 C 0.00 -0.03 7.12 -82.99 -0.59 -0.62 16 5 C 0.60 11.24 7.78 -12.39 -0.10 11.15 16 6 O -0.53 -11.36 15.47 5.30 0.08 -11.28 16 7 N -0.71 -13.05 5.07 -54.83 -0.28 -13.32 16 8 C 0.15 3.24 2.35 -67.97 -0.16 3.08 16 9 H 0.08 1.80 7.58 -51.93 -0.39 1.40 16 10 C -0.11 -2.52 5.50 -26.63 -0.15 -2.67 16 11 C -0.01 -0.20 5.59 -27.49 -0.15 -0.35 16 12 C -0.49 -13.15 5.51 -98.93 -0.55 -13.70 16 13 C 0.08 2.12 5.46 -17.82 -0.10 2.02 16 14 N -0.89 -25.90 12.73 55.43 0.71 -25.19 16 15 Si 0.89 21.80 26.80 -169.99 -4.56 17.25 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 C 0.01 0.34 5.97 -27.49 -0.16 0.18 16 20 C -0.11 -2.45 5.40 -26.63 -0.14 -2.59 16 21 C -0.14 -2.02 5.99 -104.88 -0.63 -2.64 16 22 C 0.00 0.01 6.71 -82.45 -0.55 -0.54 16 23 C -0.04 -0.30 5.90 -27.67 -0.16 -0.46 16 24 C -0.11 -0.79 5.89 -26.47 -0.16 -0.94 16 25 C -0.12 -1.03 5.91 -26.43 -0.16 -1.19 16 26 C -0.04 -0.52 5.54 -27.80 -0.15 -0.67 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 29 H 0.09 0.30 7.52 -51.93 -0.39 -0.10 16 30 H 0.40 6.63 8.34 -40.82 -0.34 6.29 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.02 0.60 5.17 -51.93 -0.27 0.33 16 34 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.06 1.66 7.07 -51.93 -0.37 1.29 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.37 7.73 -51.93 -0.40 -0.03 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.54 8.12 -51.93 -0.42 0.12 16 46 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.08 1.19 7.67 -51.93 -0.40 0.79 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -32.78 367.93 -9.20 -41.98 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.61 Total: 0.67 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -3.24 Total: -8.77 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.58 Total: -45.38 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.56 Total: 17.25 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.78 -9.20 -41.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153551826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.639 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds