Wall clock time and date at job start Tue Mar 31 2020 11:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.28846 * 124.98016 * 2 1 4 4 C 1.32210 * 110.15173 * 180.11613 * 3 2 1 5 5 C 1.47710 * 126.68007 * 179.81191 * 4 3 2 6 6 O 1.21573 * 120.00016 * 179.68800 * 5 4 3 7 7 N 1.34777 * 119.99649 * 359.96380 * 5 4 3 8 8 C 1.46505 * 119.99724 * 179.72300 * 7 5 4 9 9 H 1.09004 * 109.41175 * 324.85640 * 8 7 5 10 10 C 1.52959 * 109.41304 * 84.64859 * 8 7 5 11 11 C 1.53231 * 109.40122 * 183.70217 * 10 8 7 12 12 C 1.51261 * 108.54090 * 305.37464 * 11 10 8 13 13 C 1.37876 * 120.84995 * 231.32828 * 12 11 10 14 14 N 1.31516 * 120.00175 * 180.02562 * 13 12 11 15 15 Si 1.86793 * 120.00083 * 0.02562 * 13 12 11 16 16 H 1.48492 * 109.47518 * 59.99839 * 15 13 12 17 17 H 1.48501 * 109.47424 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47042 * 300.00046 * 15 13 12 19 19 C 1.51267 * 118.30093 * 51.34736 * 12 11 10 20 20 C 1.52958 * 109.41340 * 205.00545 * 8 7 5 21 21 C 1.40493 * 106.64273 * 359.55668 * 4 3 2 22 22 C 1.34319 * 124.98040 * 179.68966 * 2 1 3 23 23 C 1.50712 * 128.90435 * 0.15078 * 22 2 1 24 24 C 1.53397 * 108.33314 * 163.30693 * 23 22 2 25 25 C 1.53108 * 109.64551 * 50.02197 * 24 23 22 26 26 C 1.50372 * 129.43419 * 180.43526 * 21 4 3 27 27 H 1.08997 * 109.47207 * 270.31321 * 1 2 3 28 28 H 1.09007 * 109.46839 * 30.31452 * 1 2 3 29 29 H 1.09001 * 109.47340 * 150.30801 * 1 2 3 30 30 H 0.97000 * 120.00483 * 359.72732 * 7 5 4 31 31 H 1.09000 * 109.47964 * 303.68378 * 10 8 7 32 32 H 1.08994 * 109.48161 * 63.72492 * 10 8 7 33 33 H 1.09002 * 109.62334 * 185.65700 * 11 10 8 34 34 H 1.09008 * 109.78223 * 65.18521 * 11 10 8 35 35 H 0.96994 * 120.00321 * 180.02562 * 14 13 12 36 36 H 1.09000 * 109.62781 * 188.94043 * 19 12 11 37 37 H 1.09004 * 109.78535 * 68.46361 * 19 12 11 38 38 H 1.09002 * 109.47970 * 296.27594 * 20 8 7 39 39 H 1.08995 * 109.48580 * 56.31101 * 20 8 7 40 40 H 1.09001 * 109.69243 * 43.59807 * 23 22 2 41 41 H 1.09001 * 109.72022 * 283.03930 * 23 22 2 42 42 H 1.08993 * 109.44708 * 289.96081 * 24 23 22 43 43 H 1.09006 * 109.41152 * 170.05404 * 24 23 22 44 44 H 1.09002 * 109.46191 * 169.93568 * 25 24 23 45 45 H 1.08993 * 109.46075 * 49.95698 * 25 24 23 46 46 H 1.09005 * 109.70094 * 283.32703 * 26 21 4 47 47 H 1.09000 * 109.70734 * 43.92886 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2036 1.0557 0.0000 4 6 3.4817 0.7173 -0.0025 5 6 4.6378 1.6367 -0.0073 6 8 5.7689 1.1910 -0.0035 7 7 4.4387 2.9697 -0.0102 8 6 5.5854 3.8815 -0.0087 9 1 6.3906 3.4501 0.5860 10 6 6.0708 4.0901 -1.4442 11 6 7.3258 4.9693 -1.4344 12 6 7.0112 6.2484 -0.6907 13 6 7.2849 7.4778 -1.2515 14 7 7.0049 8.5794 -0.5899 15 14 8.0535 7.5790 -2.9510 16 1 7.1581 6.9255 -3.9390 17 1 8.2462 9.0036 -3.3232 18 1 9.3680 6.8882 -2.9416 19 6 6.3889 6.1441 0.6841 20 6 5.1679 5.2224 0.5975 21 6 3.5262 -0.6869 0.0062 22 6 2.2350 -1.1005 0.0060 23 6 1.8166 -2.5484 0.0107 24 6 3.0236 -3.4007 -0.4016 25 6 4.2436 -3.0036 0.4338 26 6 4.7172 -1.6047 0.0165 27 1 -0.3633 0.0056 1.0276 28 1 -0.3633 0.8872 -0.5188 29 1 -0.3634 -0.8927 -0.5090 30 1 3.5362 3.3253 -0.0132 31 1 6.3067 3.1247 -1.8920 32 1 5.2889 4.5792 -2.0249 33 1 7.6169 5.2033 -2.4584 34 1 8.1396 4.4451 -0.9332 35 1 7.1972 9.4444 -0.9845 36 1 6.0779 7.1329 1.0211 37 1 7.1121 5.7288 1.3859 38 1 4.4072 5.6847 -0.0316 39 1 4.7637 5.0595 1.5966 40 1 1.0022 -2.6978 -0.6982 41 1 1.4900 -2.8336 1.0108 42 1 3.2385 -3.2384 -1.4577 43 1 2.7971 -4.4539 -0.2352 44 1 5.0460 -3.7228 0.2694 45 1 3.9737 -2.9957 1.4898 46 1 5.1567 -1.6477 -0.9802 47 1 5.4567 -1.2393 0.7291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153551826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:50 Heat of formation + Delta-G solvation = -10.095555 kcal Electronic energy + Delta-G solvation = -26845.784373 eV Core-core repulsion = 23220.719628 eV Total energy + Delta-G solvation = -3625.064745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.83584 -40.71283 -38.43441 -37.83839 -35.39934 -34.73861 -33.37667 -31.53258 -31.23706 -30.78920 -29.49632 -27.86878 -24.99471 -24.40404 -23.43735 -23.08149 -22.82235 -21.33165 -20.86725 -19.90430 -18.51100 -17.88742 -17.50132 -17.24068 -16.93603 -16.44182 -15.80764 -15.63873 -15.32750 -14.95354 -14.68696 -14.58071 -14.53365 -14.35484 -14.18727 -14.00582 -13.91740 -13.67690 -13.41638 -13.30939 -12.86924 -12.81449 -12.67358 -12.57478 -12.04009 -11.89248 -11.82728 -11.70189 -11.64954 -11.62225 -11.56074 -11.16377 -10.85390 -10.70112 -10.55863 -10.16901 -9.86820 -9.56250 -8.19086 -6.13213 0.51249 1.09793 1.38653 1.39718 1.47823 1.56276 2.22172 2.36492 2.39655 3.08831 3.31930 3.56230 3.84419 3.98460 4.04330 4.10437 4.16846 4.25463 4.31822 4.37011 4.45622 4.48474 4.60691 4.65973 4.67018 4.67839 4.78680 4.80010 4.92462 4.99100 5.03832 5.05027 5.09911 5.16050 5.17029 5.19304 5.25541 5.33618 5.47533 5.50405 5.52127 5.54594 5.64817 5.73419 5.79307 5.92737 6.32831 6.51055 6.90789 6.91780 7.21181 7.44780 8.91753 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.002885 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.497896 B = 9702.317403 C =10192.914118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.269 5.269 3 N -0.283 5.283 4 C -0.039 4.039 5 C 0.595 3.405 6 O -0.568 6.568 7 N -0.704 5.704 8 C 0.167 3.833 9 H 0.061 0.939 10 C -0.106 4.106 11 C -0.009 4.009 12 C -0.502 4.502 13 C 0.027 3.973 14 N -0.927 5.927 15 Si 0.941 3.059 16 H -0.266 1.266 17 H -0.290 1.290 18 H -0.269 1.269 19 C 0.011 3.989 20 C -0.100 4.100 21 C -0.174 4.174 22 C 0.018 3.982 23 C -0.041 4.041 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.042 4.042 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.409 0.591 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.028 0.972 34 H 0.017 0.983 35 H 0.265 0.735 36 H 0.036 0.964 37 H 0.000 1.000 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.791 -25.694 0.798 31.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.056 5.056 3 N -0.120 5.120 4 C -0.196 4.196 5 C 0.381 3.619 6 O -0.446 6.446 7 N -0.353 5.353 8 C 0.063 3.937 9 H 0.079 0.921 10 C -0.144 4.144 11 C -0.047 4.047 12 C -0.521 4.521 13 C -0.171 4.171 14 N -0.566 5.566 15 Si 0.768 3.232 16 H -0.191 1.191 17 H -0.216 1.216 18 H -0.195 1.195 19 C -0.027 4.027 20 C -0.139 4.139 21 C -0.185 4.185 22 C -0.109 4.109 23 C -0.079 4.079 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.081 4.081 27 H 0.121 0.879 28 H 0.119 0.881 29 H 0.147 0.853 30 H 0.245 0.755 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.054 0.946 37 H 0.018 0.982 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.099 0.901 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.846 -24.837 0.801 30.594 hybrid contribution 0.901 0.685 -0.735 1.349 sum -16.945 -24.152 0.065 29.503 Atomic orbital electron populations 1.22648 0.70359 1.07307 1.06225 1.45553 1.09086 1.02062 1.48903 1.73750 1.02329 1.14720 1.21222 1.21478 0.90875 0.94290 1.12968 1.17283 0.86904 0.81935 0.75756 1.90731 1.24158 1.77485 1.52208 1.46049 1.10823 1.05066 1.73393 1.20713 0.87270 0.88988 0.96733 0.92096 1.21782 0.98984 0.97835 0.95849 1.19591 0.94185 0.94852 0.96109 1.20568 1.39186 0.90306 1.02068 1.25536 0.95794 0.95099 1.00707 1.69936 1.49062 0.98038 1.39613 0.85830 0.79732 0.76475 0.81197 1.19142 1.21625 1.19460 1.19285 0.92791 0.95579 0.95070 1.21706 0.99479 0.93837 0.98838 1.20200 0.96498 0.91858 1.09906 1.21682 0.89602 0.92942 1.06637 1.20435 0.99592 0.83474 1.04448 1.21588 0.93170 1.00416 0.99816 1.21650 0.98933 0.94353 1.00340 1.19945 0.93146 0.93793 1.01191 0.87891 0.88129 0.85349 0.75491 0.94152 0.92865 0.95342 0.96427 0.92614 0.94551 0.98202 0.92614 0.92494 0.87544 0.87938 0.92067 0.87954 0.90101 0.91491 0.92021 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 11.17 127.77 1.43 1.99 16 2 N -0.27 -5.30 3.69 -356.28 -1.31 -6.61 16 3 N -0.28 -7.96 11.71 -48.62 -0.57 -8.53 16 4 C -0.04 -1.29 7.12 42.14 0.30 -0.99 16 5 C 0.60 23.11 7.78 86.75 0.68 23.79 16 6 O -0.57 -25.32 15.47 -3.95 -0.06 -25.38 16 7 N -0.70 -26.15 5.07 -445.65 -2.26 -28.41 16 8 C 0.17 7.07 2.35 44.96 0.11 7.17 16 9 H 0.06 2.83 7.58 -2.38 -0.02 2.81 16 10 C -0.11 -4.71 5.50 30.66 0.17 -4.54 16 11 C -0.01 -0.46 5.59 30.10 0.17 -0.29 16 12 C -0.50 -27.44 5.51 -16.18 -0.09 -27.53 16 13 C 0.03 1.54 5.46 84.65 0.46 2.00 16 14 N -0.93 -55.01 12.73 21.45 0.27 -54.74 16 15 Si 0.94 44.85 26.80 68.60 1.84 46.69 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 C 0.01 0.56 5.97 30.11 0.18 0.74 16 20 C -0.10 -4.33 5.40 30.66 0.17 -4.16 16 21 C -0.17 -4.81 5.99 -20.03 -0.12 -4.93 16 22 C 0.02 0.35 6.71 41.57 0.28 0.63 16 23 C -0.04 -0.37 5.90 29.98 0.18 -0.19 16 24 C -0.11 -1.12 5.89 30.76 0.18 -0.94 16 25 C -0.12 -1.77 5.91 30.79 0.18 -1.59 16 26 C -0.04 -1.07 5.54 29.90 0.17 -0.91 16 27 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 29 H 0.13 0.10 7.52 -2.39 -0.02 0.08 16 30 H 0.41 13.55 8.34 -92.71 -0.77 12.77 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.03 1.36 5.17 -2.39 -0.01 1.34 16 34 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 36 H 0.04 2.04 7.07 -2.39 -0.02 2.02 16 37 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 38 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.11 0.39 7.73 -2.39 -0.02 0.37 16 41 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.06 0.73 8.12 -2.39 -0.02 0.71 16 43 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 46 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 47 H 0.05 1.68 7.67 -2.39 -0.02 1.66 16 Total: -1.00 -74.31 367.93 2.54 -71.77 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.20 Total: 14.97 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 4.43 Total: -9.76 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -3.87 Total: -98.29 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.06 Total: -25.38 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.84 Total: 46.69 kcal Total: -74.31 2.54 -71.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153551826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.671 kcal (2) G-P(sol) polarization free energy of solvation -74.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds