Wall clock time and date at job start Tue Mar 31 2020 11:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 120.00145 * 2 1 4 4 H 1.08002 * 119.99862 * 36.20817 * 3 2 1 5 5 C 1.38808 * 120.00422 * 216.21108 * 3 2 1 6 6 N 1.31615 * 120.00260 * 25.20965 * 5 3 2 7 7 Si 1.86806 * 120.00060 * 204.93956 * 5 3 2 8 8 H 1.48500 * 109.47082 * 185.26324 * 7 5 3 9 9 H 1.48506 * 109.46701 * 305.26378 * 7 5 3 10 10 H 1.48500 * 109.47286 * 65.26414 * 7 5 3 11 11 C 1.46503 * 120.00355 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46872 * 267.28056 * 11 2 1 13 13 H 1.09001 * 109.58139 * 298.49269 * 12 11 2 14 14 C 1.53192 * 109.58829 * 58.77341 * 12 11 2 15 15 C 1.53043 * 109.31297 * 174.42144 * 14 12 11 16 16 C 1.53035 * 109.53735 * 298.63685 * 15 14 12 17 17 C 1.53188 * 109.31447 * 61.36397 * 16 15 14 18 18 N 1.46918 * 109.58520 * 178.20520 * 12 11 2 19 19 C 1.34778 * 120.63136 * 6.60947 * 18 12 11 20 20 O 1.21274 * 120.00192 * 4.56687 * 19 18 12 21 21 C 1.50702 * 120.00065 * 184.56591 * 19 18 12 22 22 C 1.50700 * 109.47206 * 183.73129 * 21 19 18 23 23 C 1.38677 * 120.41465 * 273.38401 * 22 21 19 24 24 C 1.38627 * 118.41454 * 179.78181 * 23 22 21 25 25 C 1.38221 * 119.16659 * 0.47153 * 24 23 22 26 26 N 1.31855 * 120.76126 * 359.76804 * 25 24 23 27 27 C 1.31885 * 121.72782 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47011 * 91.26183 * 1 2 3 29 29 H 1.08999 * 109.47148 * 211.26259 * 1 2 3 30 30 H 1.08997 * 109.46587 * 331.26240 * 1 2 3 31 31 H 0.97004 * 119.99836 * 4.88827 * 6 5 3 32 32 H 1.09007 * 109.46784 * 27.27651 * 11 2 1 33 33 H 1.08998 * 109.47337 * 147.27417 * 11 2 1 34 34 H 1.09007 * 109.49966 * 294.37668 * 14 12 11 35 35 H 1.08999 * 109.49515 * 54.46903 * 14 12 11 36 36 H 1.08999 * 109.45752 * 58.66014 * 15 14 12 37 37 H 1.09000 * 109.45913 * 178.61258 * 15 14 12 38 38 H 1.09003 * 109.49578 * 181.31949 * 16 15 14 39 39 H 1.09004 * 109.49745 * 301.37863 * 16 15 14 40 40 H 1.09000 * 109.58931 * 65.15510 * 17 16 15 41 41 H 1.09003 * 109.58715 * 185.57569 * 17 16 15 42 42 H 1.08999 * 109.47119 * 303.73129 * 21 19 18 43 43 H 1.08998 * 109.47281 * 63.73034 * 21 19 18 44 44 H 1.07998 * 120.79150 * 0.02562 * 23 22 21 45 45 H 1.08012 * 120.41534 * 180.22100 * 24 23 22 46 46 H 1.07999 * 119.62283 * 179.78668 * 25 24 23 47 47 H 1.07998 * 119.61787 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7661 2.0309 0.5525 5 6 3.3367 1.3021 -0.7101 6 7 3.5649 0.5191 -1.7432 7 14 4.6071 2.5748 -0.2042 8 1 5.7179 2.5843 -1.1897 9 1 3.9728 3.9168 -0.1603 10 1 5.1404 2.2350 1.1394 11 6 2.1976 -1.2687 -0.0006 12 6 2.5119 -1.6767 1.4402 13 1 3.1434 -0.9195 1.9048 14 6 1.2073 -1.8135 2.2314 15 6 1.5172 -2.3552 3.6288 16 6 2.1578 -3.7400 3.5104 17 6 3.4731 -3.6251 2.7336 18 7 3.2088 -2.9701 1.4448 19 6 3.5952 -3.5461 0.2893 20 8 3.4431 -2.9596 -0.7613 21 6 4.2164 -4.9191 0.3025 22 6 4.6392 -5.2927 -1.0949 23 6 3.7398 -5.8918 -1.9639 24 6 4.1715 -6.2139 -3.2413 25 6 5.4775 -5.9383 -3.6005 26 7 6.3067 -5.3720 -2.7459 27 6 5.9296 -5.0483 -1.5243 28 1 -0.3633 -0.0226 -1.0274 29 1 -0.3633 -0.8784 0.5333 30 1 -0.3632 0.9011 0.4941 31 1 2.8757 -0.0897 -2.0520 32 1 1.5882 -2.0399 -0.4719 33 1 3.1280 -1.1508 -0.5561 34 1 0.7298 -0.8373 2.3173 35 1 0.5387 -2.5018 1.7144 36 1 2.2053 -1.6789 4.1360 37 1 0.5934 -2.4302 4.2024 38 1 2.3568 -4.1352 4.5066 39 1 1.4799 -4.4104 2.9819 40 1 4.1842 -3.0287 3.3052 41 1 3.8835 -4.6200 2.5607 42 1 5.0876 -4.9174 0.9575 43 1 3.4886 -5.6436 0.6679 44 1 2.7261 -6.0989 -1.6543 45 1 3.4970 -6.6782 -3.9457 46 1 5.8226 -6.1893 -4.5926 47 1 6.6373 -4.5861 -0.8521 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157802637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:34 Heat of formation + Delta-G solvation = 36.059831 kcal Electronic energy + Delta-G solvation = -28038.503778 eV Core-core repulsion = 24415.440480 eV Total energy + Delta-G solvation = -3623.063297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.49355 -39.65232 -37.10401 -35.65955 -33.54934 -32.57715 -31.86655 -31.52991 -30.41819 -28.06664 -26.49988 -25.21873 -24.31509 -23.48836 -22.86728 -22.00495 -20.56306 -20.29927 -18.58285 -17.36348 -17.01852 -16.44321 -16.18124 -15.76633 -15.20240 -14.70232 -14.32657 -14.19597 -13.85740 -13.75786 -13.56262 -13.46859 -13.32173 -13.06289 -12.98934 -12.93262 -12.82190 -12.47675 -11.93011 -11.62509 -11.44217 -11.16947 -11.05484 -11.03066 -10.68056 -10.64902 -10.42161 -10.12697 -10.07419 -9.96574 -9.69707 -9.37183 -9.21128 -8.98462 -8.55025 -8.25691 -8.04411 -6.59258 -5.82830 -3.20481 1.18619 1.39363 3.03843 3.31991 3.55029 3.57114 3.76659 3.93437 4.47604 4.69966 4.72866 4.77635 4.82201 4.89870 4.95762 5.04000 5.07418 5.13111 5.34219 5.40031 5.41168 5.47619 5.53538 5.53817 5.71193 5.74375 5.83107 5.89574 5.94481 5.98825 6.16395 6.17659 6.21824 6.30671 6.37484 6.44206 6.54384 6.60329 6.75174 6.78143 6.86379 6.98218 7.16562 7.79340 7.93132 8.07190 8.22396 8.63663 8.80502 9.33198 10.00096 10.46037 11.33689 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.005370 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.103540 B = 5212.990280 C = 6726.504113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.601 5.601 3 C -0.362 4.362 4 H 0.047 0.953 5 C -0.018 4.018 6 N -0.894 5.894 7 Si 1.060 2.940 8 H -0.286 1.286 9 H -0.293 1.293 10 H -0.295 1.295 11 C 0.143 3.857 12 C 0.129 3.871 13 H 0.069 0.931 14 C -0.120 4.120 15 C -0.121 4.121 16 C -0.132 4.132 17 C 0.106 3.894 18 N -0.608 5.608 19 C 0.504 3.496 20 O -0.498 6.498 21 C -0.099 4.099 22 C -0.111 4.111 23 C -0.059 4.059 24 C -0.172 4.172 25 C 0.093 3.907 26 N -0.484 5.484 27 C 0.113 3.887 28 H -0.003 1.003 29 H 0.025 0.975 30 H 0.032 0.968 31 H 0.274 0.726 32 H 0.029 0.971 33 H 0.119 0.881 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.152 0.848 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.224 -16.524 8.188 18.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.326 5.326 3 C -0.492 4.492 4 H 0.065 0.935 5 C -0.223 4.223 6 N -0.532 5.532 7 Si 0.891 3.109 8 H -0.212 1.212 9 H -0.220 1.220 10 H -0.222 1.222 11 C 0.017 3.983 12 C 0.025 3.975 13 H 0.087 0.913 14 C -0.158 4.158 15 C -0.158 4.158 16 C -0.170 4.170 17 C -0.018 4.018 18 N -0.344 5.344 19 C 0.290 3.710 20 O -0.372 6.372 21 C -0.139 4.139 22 C -0.114 4.114 23 C -0.085 4.085 24 C -0.192 4.192 25 C -0.063 4.063 26 N -0.192 5.192 27 C -0.044 4.044 28 H 0.015 0.985 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.048 0.952 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.147 0.853 45 H 0.150 0.850 46 H 0.170 0.830 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 2.059 -15.418 6.970 17.045 hybrid contribution -2.675 -0.660 0.901 2.899 sum -0.616 -16.078 7.870 17.911 Atomic orbital electron populations 1.21153 0.86582 0.97861 0.96923 1.44087 0.99676 1.02770 1.86025 1.19781 1.08667 0.91337 1.29404 0.93495 1.25862 1.00460 1.02488 0.93512 1.70711 1.38743 1.24210 1.19539 0.83603 0.76504 0.75247 0.75593 1.21153 1.21964 1.22207 1.21783 1.00305 0.85402 0.90761 1.22271 0.91409 0.81714 1.02148 0.91291 1.21953 0.98097 1.01500 0.94295 1.21554 1.00244 0.96038 0.98009 1.21891 0.97118 0.98166 0.99848 1.21704 0.97142 0.97718 0.85214 1.48333 1.58562 1.22382 1.05112 1.20387 0.79358 0.87112 0.84147 1.90900 1.53119 1.62320 1.30837 1.20685 1.02331 0.96176 0.94744 1.20302 0.95306 0.99513 0.96248 1.21376 0.98986 0.94932 0.93217 1.22064 0.97654 1.02438 0.97042 1.22705 0.90267 0.94613 0.98756 1.67661 1.37772 1.10692 1.03101 1.22579 0.94057 0.95120 0.92613 0.98460 0.95671 0.94941 0.91401 0.95211 0.86333 0.90216 0.92890 0.91975 0.92406 0.91290 0.91850 0.91544 0.90293 0.88225 0.88255 0.85271 0.84992 0.83022 0.83106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.74 9.71 59.85 0.58 3.32 16 2 N -0.60 -15.83 2.28 -181.12 -0.41 -16.24 16 3 C -0.36 -10.50 9.39 -15.06 -0.14 -10.65 16 4 H 0.05 1.37 7.94 -52.49 -0.42 0.96 16 5 C -0.02 -0.54 4.89 -17.43 -0.09 -0.63 16 6 N -0.89 -28.41 12.24 55.49 0.68 -27.73 16 7 Si 1.06 26.37 29.99 -169.99 -5.10 21.27 16 8 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 9 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 C 0.14 3.56 2.82 -4.04 -0.01 3.54 16 12 C 0.13 2.59 3.20 -67.60 -0.22 2.38 16 13 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 14 C -0.12 -2.03 3.99 -26.61 -0.11 -2.13 16 15 C -0.12 -1.55 5.88 -26.69 -0.16 -1.71 16 16 C -0.13 -1.38 6.08 -26.62 -0.16 -1.54 16 17 C 0.11 1.21 6.32 -3.69 -0.02 1.18 16 18 N -0.61 -9.96 2.98 -165.20 -0.49 -10.46 16 19 C 0.50 8.73 7.54 -10.98 -0.08 8.64 16 20 O -0.50 -11.34 11.57 5.56 0.06 -11.27 16 21 C -0.10 -1.18 4.24 -29.03 -0.12 -1.31 16 22 C -0.11 -1.54 4.39 -104.48 -0.46 -2.00 16 23 C -0.06 -0.77 9.87 -39.28 -0.39 -1.16 16 24 C -0.17 -2.11 10.11 -39.44 -0.40 -2.50 16 25 C 0.09 1.24 11.18 -17.55 -0.20 1.04 16 26 N -0.48 -7.57 10.36 -13.26 -0.14 -7.71 16 27 C 0.11 1.68 10.85 -17.55 -0.19 1.49 16 28 H 0.00 -0.06 8.14 -51.93 -0.42 -0.49 16 29 H 0.02 0.50 6.27 -51.93 -0.33 0.17 16 30 H 0.03 0.71 8.03 -51.93 -0.42 0.29 16 31 H 0.27 9.03 7.01 -40.82 -0.29 8.75 16 32 H 0.03 0.75 7.12 -51.93 -0.37 0.38 16 33 H 0.12 3.41 3.42 -51.93 -0.18 3.23 16 34 H 0.08 1.48 6.71 -51.93 -0.35 1.13 16 35 H 0.05 0.90 7.84 -51.93 -0.41 0.49 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.66 5.93 -51.93 -0.31 0.36 16 42 H 0.10 0.94 7.49 -51.93 -0.39 0.56 16 43 H 0.10 0.92 7.99 -51.93 -0.41 0.51 16 44 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 46 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 47 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 366.19 15.07 5.52 5.52 Total: -1.00 -35.96 366.19 -9.35 -45.31 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -7.31 Total: 3.33 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.16 Total: -2.02 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -0.36 Total: -62.14 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.06 Total: -11.27 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -5.10 Total: 21.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.96 -9.35 -45.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157802637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.369 kcal (2) G-P(sol) polarization free energy of solvation -35.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds