Wall clock time and date at job start Tue Mar 31 2020 11:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36936 * 120.00145 * 2 1 4 4 H 1.08002 * 119.99862 * 36.20817 * 3 2 1 5 5 C 1.38808 * 120.00422 * 216.21108 * 3 2 1 6 6 N 1.31615 * 120.00260 * 25.20965 * 5 3 2 7 7 Si 1.86806 * 120.00060 * 204.93956 * 5 3 2 8 8 H 1.48500 * 109.47082 * 185.26324 * 7 5 3 9 9 H 1.48506 * 109.46701 * 305.26378 * 7 5 3 10 10 H 1.48500 * 109.47286 * 65.26414 * 7 5 3 11 11 C 1.46503 * 120.00355 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46872 * 267.28056 * 11 2 1 13 13 H 1.09001 * 109.58139 * 298.49269 * 12 11 2 14 14 C 1.53192 * 109.58829 * 58.77341 * 12 11 2 15 15 C 1.53043 * 109.31297 * 174.42144 * 14 12 11 16 16 C 1.53035 * 109.53735 * 298.63685 * 15 14 12 17 17 C 1.53188 * 109.31447 * 61.36397 * 16 15 14 18 18 N 1.46918 * 109.58520 * 178.20520 * 12 11 2 19 19 C 1.34778 * 120.63136 * 6.60947 * 18 12 11 20 20 O 1.21274 * 120.00192 * 4.56687 * 19 18 12 21 21 C 1.50702 * 120.00065 * 184.56591 * 19 18 12 22 22 C 1.50700 * 109.47206 * 183.73129 * 21 19 18 23 23 C 1.38677 * 120.41465 * 273.38401 * 22 21 19 24 24 C 1.38627 * 118.41454 * 179.78181 * 23 22 21 25 25 C 1.38221 * 119.16659 * 0.47153 * 24 23 22 26 26 N 1.31855 * 120.76126 * 359.76804 * 25 24 23 27 27 C 1.31885 * 121.72782 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47011 * 91.26183 * 1 2 3 29 29 H 1.08999 * 109.47148 * 211.26259 * 1 2 3 30 30 H 1.08997 * 109.46587 * 331.26240 * 1 2 3 31 31 H 0.97004 * 119.99836 * 4.88827 * 6 5 3 32 32 H 1.09007 * 109.46784 * 27.27651 * 11 2 1 33 33 H 1.08998 * 109.47337 * 147.27417 * 11 2 1 34 34 H 1.09007 * 109.49966 * 294.37668 * 14 12 11 35 35 H 1.08999 * 109.49515 * 54.46903 * 14 12 11 36 36 H 1.08999 * 109.45752 * 58.66014 * 15 14 12 37 37 H 1.09000 * 109.45913 * 178.61258 * 15 14 12 38 38 H 1.09003 * 109.49578 * 181.31949 * 16 15 14 39 39 H 1.09004 * 109.49745 * 301.37863 * 16 15 14 40 40 H 1.09000 * 109.58931 * 65.15510 * 17 16 15 41 41 H 1.09003 * 109.58715 * 185.57569 * 17 16 15 42 42 H 1.08999 * 109.47119 * 303.73129 * 21 19 18 43 43 H 1.08998 * 109.47281 * 63.73034 * 21 19 18 44 44 H 1.07998 * 120.79150 * 0.02562 * 23 22 21 45 45 H 1.08012 * 120.41534 * 180.22100 * 24 23 22 46 46 H 1.07999 * 119.62283 * 179.78668 * 25 24 23 47 47 H 1.07998 * 119.61787 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7661 2.0309 0.5525 5 6 3.3367 1.3021 -0.7101 6 7 3.5649 0.5191 -1.7432 7 14 4.6071 2.5748 -0.2042 8 1 5.7179 2.5843 -1.1897 9 1 3.9728 3.9168 -0.1603 10 1 5.1404 2.2350 1.1394 11 6 2.1976 -1.2687 -0.0006 12 6 2.5119 -1.6767 1.4402 13 1 3.1434 -0.9195 1.9048 14 6 1.2073 -1.8135 2.2314 15 6 1.5172 -2.3552 3.6288 16 6 2.1578 -3.7400 3.5104 17 6 3.4731 -3.6251 2.7336 18 7 3.2088 -2.9701 1.4448 19 6 3.5952 -3.5461 0.2893 20 8 3.4431 -2.9596 -0.7613 21 6 4.2164 -4.9191 0.3025 22 6 4.6392 -5.2927 -1.0949 23 6 3.7398 -5.8918 -1.9639 24 6 4.1715 -6.2139 -3.2413 25 6 5.4775 -5.9383 -3.6005 26 7 6.3067 -5.3720 -2.7459 27 6 5.9296 -5.0483 -1.5243 28 1 -0.3633 -0.0226 -1.0274 29 1 -0.3633 -0.8784 0.5333 30 1 -0.3632 0.9011 0.4941 31 1 2.8757 -0.0897 -2.0520 32 1 1.5882 -2.0399 -0.4719 33 1 3.1280 -1.1508 -0.5561 34 1 0.7298 -0.8373 2.3173 35 1 0.5387 -2.5018 1.7144 36 1 2.2053 -1.6789 4.1360 37 1 0.5934 -2.4302 4.2024 38 1 2.3568 -4.1352 4.5066 39 1 1.4799 -4.4104 2.9819 40 1 4.1842 -3.0287 3.3052 41 1 3.8835 -4.6200 2.5607 42 1 5.0876 -4.9174 0.9575 43 1 3.4886 -5.6436 0.6679 44 1 2.7261 -6.0989 -1.6543 45 1 3.4970 -6.6782 -3.9457 46 1 5.8226 -6.1893 -4.5926 47 1 6.6373 -4.5861 -0.8521 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157802637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:33 Heat of formation + Delta-G solvation = 13.004806 kcal Electronic energy + Delta-G solvation = -28039.503519 eV Core-core repulsion = 24415.440480 eV Total energy + Delta-G solvation = -3624.063038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72159 -40.80029 -38.48419 -37.48912 -34.72265 -33.79479 -33.45350 -32.83008 -32.05817 -29.16548 -28.07161 -27.28811 -25.62838 -24.51273 -24.13248 -23.38415 -22.16979 -21.62120 -19.84593 -19.38664 -18.01418 -17.72072 -17.40021 -17.08017 -16.49923 -15.96119 -15.79608 -15.71080 -15.47551 -15.24040 -15.00998 -14.91731 -14.60138 -14.45709 -14.12874 -14.07852 -13.95699 -13.86532 -13.20173 -13.07729 -12.96554 -12.83891 -12.64042 -12.42023 -12.30730 -11.97065 -11.87982 -11.85312 -11.61361 -11.42795 -11.29237 -10.74805 -10.47272 -10.41795 -10.26272 -9.82543 -9.44408 -8.81205 -8.08503 -5.50759 0.16560 0.37583 1.50933 1.59564 1.75727 1.78458 2.08259 2.64476 2.88907 3.24617 3.49933 3.66692 3.70963 3.83490 3.91508 3.94605 3.99075 4.07447 4.09725 4.12562 4.19603 4.38020 4.46218 4.50880 4.53734 4.60013 4.61467 4.70909 4.76418 4.81220 4.86832 4.90790 4.92457 5.02913 5.08780 5.12763 5.18043 5.25300 5.26705 5.31458 5.47914 5.59287 5.79986 5.88585 5.95616 6.38272 6.60425 7.03650 7.13019 7.38852 7.82821 8.25920 8.97643 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010242 B = 0.005370 C = 0.004162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.103540 B = 5212.990280 C = 6726.504113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.620 5.620 3 C -0.364 4.364 4 H 0.043 0.957 5 C -0.071 4.071 6 N -0.922 5.922 7 Si 1.109 2.891 8 H -0.295 1.295 9 H -0.270 1.270 10 H -0.278 1.278 11 C 0.155 3.845 12 C 0.139 3.861 13 H 0.036 0.964 14 C -0.110 4.110 15 C -0.117 4.117 16 C -0.125 4.125 17 C 0.097 3.903 18 N -0.609 5.609 19 C 0.494 3.506 20 O -0.564 6.564 21 C -0.083 4.083 22 C -0.122 4.122 23 C -0.071 4.071 24 C -0.172 4.172 25 C 0.078 3.922 26 N -0.516 5.516 27 C 0.089 3.911 28 H -0.016 1.016 29 H 0.053 0.947 30 H 0.039 0.961 31 H 0.252 0.748 32 H 0.013 0.987 33 H 0.082 0.918 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.148 0.852 45 H 0.162 0.838 46 H 0.176 0.824 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 -18.533 10.988 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.345 5.345 3 C -0.493 4.493 4 H 0.061 0.939 5 C -0.269 4.269 6 N -0.562 5.562 7 Si 0.934 3.066 8 H -0.221 1.221 9 H -0.195 1.195 10 H -0.204 1.204 11 C 0.030 3.970 12 C 0.033 3.967 13 H 0.054 0.946 14 C -0.148 4.148 15 C -0.154 4.154 16 C -0.163 4.163 17 C -0.025 4.025 18 N -0.343 5.343 19 C 0.283 3.717 20 O -0.442 6.442 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.097 4.097 24 C -0.192 4.192 25 C -0.079 4.079 26 N -0.225 5.225 27 C -0.068 4.068 28 H 0.003 0.997 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.137 0.863 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.166 0.834 45 H 0.180 0.820 46 H 0.193 0.807 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.717 -17.463 9.843 20.120 hybrid contribution -2.650 -0.060 -0.012 2.651 sum -0.933 -17.524 9.831 20.114 Atomic orbital electron populations 1.21189 0.84838 0.99540 0.96585 1.44362 1.01086 1.02725 1.86369 1.20000 1.08918 0.92192 1.28240 0.93907 1.27282 1.02833 1.03846 0.92987 1.70856 1.38092 1.25640 1.21597 0.82965 0.74045 0.74045 0.75586 1.22118 1.19508 1.20414 1.21467 0.97951 0.84191 0.93380 1.21678 0.92974 0.83243 0.98757 0.94597 1.21792 0.95752 1.00617 0.96647 1.21542 1.01532 0.97444 0.94929 1.21891 0.96113 0.96495 1.01759 1.22141 0.98315 0.99303 0.82703 1.48404 1.57661 1.20999 1.07231 1.21360 0.78403 0.88686 0.83268 1.90894 1.55738 1.64353 1.33171 1.20697 1.04009 0.93036 0.94561 1.20515 0.95000 0.99437 0.97451 1.21761 0.99740 0.94668 0.93567 1.22440 0.97673 1.01642 0.97424 1.23210 0.90807 0.94327 0.99512 1.67632 1.39151 1.11862 1.03879 1.22828 0.95135 0.95915 0.92879 0.99740 0.92872 0.94230 0.93811 0.96858 0.90016 0.92485 0.93012 0.92326 0.90335 0.87541 0.91276 0.91102 0.86252 0.85108 0.84411 0.83445 0.82023 0.80675 0.82580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.74 9.71 127.77 1.24 6.98 16 2 N -0.62 -33.86 2.28 -726.93 -1.66 -35.52 16 3 C -0.36 -21.70 9.39 84.03 0.79 -20.91 16 4 H 0.04 2.55 7.94 -2.91 -0.02 2.53 16 5 C -0.07 -4.33 4.89 84.86 0.42 -3.92 16 6 N -0.92 -61.48 12.24 21.65 0.26 -61.22 16 7 Si 1.11 54.29 29.99 68.60 2.06 56.35 16 8 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 C 0.16 8.06 2.82 86.38 0.24 8.31 16 12 C 0.14 5.67 3.20 44.98 0.14 5.82 16 13 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 14 C -0.11 -3.60 3.99 30.67 0.12 -3.48 16 15 C -0.12 -2.63 5.88 30.62 0.18 -2.45 16 16 C -0.12 -2.01 6.08 30.67 0.19 -1.82 16 17 C 0.10 1.82 6.32 86.35 0.55 2.37 16 18 N -0.61 -19.21 2.98 -794.95 -2.37 -21.58 16 19 C 0.49 16.86 7.54 87.66 0.66 17.52 16 20 O -0.56 -26.77 11.57 -3.01 -0.03 -26.81 16 21 C -0.08 -1.78 4.24 29.10 0.12 -1.65 16 22 C -0.12 -3.26 4.39 -19.77 -0.09 -3.34 16 23 C -0.07 -1.78 9.87 22.47 0.22 -1.56 16 24 C -0.17 -4.03 10.11 22.36 0.23 -3.81 16 25 C 0.08 2.05 11.18 84.69 0.95 3.00 16 26 N -0.52 -16.43 10.36 -195.85 -2.03 -18.46 16 27 C 0.09 2.66 10.85 84.67 0.92 3.58 16 28 H -0.02 -0.76 8.14 -2.39 -0.02 -0.78 16 29 H 0.05 2.13 6.27 -2.39 -0.01 2.11 16 30 H 0.04 1.75 8.03 -2.39 -0.02 1.73 16 31 H 0.25 17.65 7.01 -92.70 -0.65 17.00 16 32 H 0.01 0.70 7.12 -2.38 -0.02 0.68 16 33 H 0.08 4.99 3.42 -2.39 -0.01 4.98 16 34 H 0.06 2.11 6.71 -2.38 -0.02 2.09 16 35 H 0.05 1.69 7.84 -2.39 -0.02 1.67 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.12 1.32 5.93 -2.39 -0.01 1.31 16 42 H 0.13 1.98 7.49 -2.39 -0.02 1.96 16 43 H 0.14 1.90 7.99 -2.39 -0.02 1.88 16 44 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 45 H 0.16 2.67 8.06 -2.90 -0.02 2.64 16 46 H 0.18 3.48 8.06 -2.91 -0.02 3.46 16 47 H 0.16 4.20 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -85.93 366.19 4.18 -81.75 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 1.07 Total: 20.86 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 6.88 Total: 4.62 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -5.79 Total: -136.77 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.03 Total: -26.81 kcal Atomic # 14 Polarization: 54.29 SS G_CDS: 2.06 Total: 56.35 kcal Total: -85.93 4.18 -81.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157802637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.753 kcal (2) G-P(sol) polarization free energy of solvation -85.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds