Wall clock time and date at job start Tue Mar 31 2020 11:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36935 * 119.99728 * 2 1 4 4 H 1.08005 * 120.00213 * 37.49302 * 3 2 1 5 5 C 1.38805 * 120.00074 * 217.48414 * 3 2 1 6 6 N 1.31627 * 119.99746 * 25.86255 * 5 3 2 7 7 Si 1.86799 * 120.00334 * 205.85797 * 5 3 2 8 8 H 1.48503 * 109.47314 * 175.00661 * 7 5 3 9 9 H 1.48502 * 109.47226 * 295.00320 * 7 5 3 10 10 H 1.48503 * 109.47080 * 55.00471 * 7 5 3 11 11 C 1.46493 * 119.99936 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47381 * 266.23719 * 11 2 1 13 13 H 1.09004 * 109.58478 * 298.59476 * 12 11 2 14 14 C 1.53194 * 109.58868 * 58.87596 * 12 11 2 15 15 C 1.53076 * 109.29394 * 174.28285 * 14 12 11 16 16 C 1.53041 * 109.65792 * 298.84614 * 15 14 12 17 17 C 1.53194 * 109.31176 * 61.30344 * 16 15 14 18 18 N 1.46922 * 108.77629 * 305.36447 * 17 16 15 19 19 C 1.34784 * 120.63159 * 233.58940 * 18 17 16 20 20 O 1.21776 * 120.00050 * 184.82176 * 19 18 17 21 21 C 1.41521 * 119.99762 * 4.81777 * 19 18 17 22 22 C 1.35610 * 119.99758 * 184.08757 * 21 19 18 23 23 C 1.41675 * 120.00064 * 185.27612 * 22 21 19 24 24 C 1.38278 * 126.26204 * 180.02562 * 23 22 21 25 25 C 1.39787 * 107.07985 * 179.97438 * 24 23 22 26 26 C 1.35497 * 107.91053 * 359.97438 * 25 24 23 27 27 N 1.35763 * 108.90817 * 359.75303 * 26 25 24 28 28 H 0.96996 * 125.68776 * 180.27957 * 27 26 25 29 29 H 1.08998 * 109.46943 * 91.40703 * 1 2 3 30 30 H 1.08995 * 109.46864 * 211.41139 * 1 2 3 31 31 H 1.09004 * 109.47050 * 331.40857 * 1 2 3 32 32 H 0.96998 * 120.00292 * 5.32663 * 6 5 3 33 33 H 1.09003 * 109.47335 * 26.24208 * 11 2 1 34 34 H 1.09000 * 109.46851 * 146.23319 * 11 2 1 35 35 H 1.08996 * 109.49441 * 294.37357 * 14 12 11 36 36 H 1.08998 * 109.49283 * 54.47435 * 14 12 11 37 37 H 1.08998 * 109.44821 * 178.75802 * 15 14 12 38 38 H 1.08995 * 109.33583 * 58.86542 * 15 14 12 39 39 H 1.08998 * 109.49953 * 301.35001 * 16 15 14 40 40 H 1.09003 * 109.52591 * 181.27222 * 16 15 14 41 41 H 1.09003 * 109.58586 * 185.57718 * 17 16 15 42 42 H 1.08996 * 109.70249 * 65.22174 * 17 16 15 43 43 H 1.08001 * 119.99743 * 4.09090 * 21 19 18 44 44 H 1.08005 * 120.00127 * 5.27780 * 22 21 19 45 45 H 1.08006 * 126.45840 * 359.94191 * 24 23 22 46 46 H 1.08002 * 126.04722 * 179.97438 * 25 24 23 47 47 H 1.08002 * 125.54668 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7770 2.0247 0.5693 5 6 3.3228 1.3101 -0.7315 6 7 3.5252 0.5474 -1.7850 7 14 4.6141 2.5596 -0.2210 8 1 5.8138 2.4123 -1.0838 9 1 4.0627 3.9304 -0.3699 10 1 4.9925 2.3294 1.1965 11 6 2.1975 -1.2687 -0.0006 12 6 2.5345 -1.6637 1.4386 13 1 3.1718 -0.9015 1.8870 14 6 1.2424 -1.7956 2.2509 15 6 1.5749 -2.3281 3.6470 16 6 2.2192 -3.7114 3.5305 17 6 3.5226 -3.5976 2.7335 18 7 3.2339 -2.9558 1.4438 19 6 3.6037 -3.5411 0.2874 20 8 3.4379 -2.9597 -0.7696 21 6 4.1849 -4.8314 0.3017 22 6 4.6329 -5.3861 -0.8519 23 6 5.1116 -6.7195 -0.8576 24 6 5.5962 -7.4098 -1.9534 25 6 5.9571 -8.6849 -1.5086 26 6 5.6948 -8.7529 -0.1810 27 7 5.1859 -7.5626 0.2284 28 1 4.9173 -7.3437 1.1343 29 1 -0.3633 -0.0252 -1.0273 30 1 -0.3633 -0.8770 0.5356 31 1 -0.3633 0.9024 0.4918 32 1 2.8240 -0.0462 -2.0961 33 1 1.5809 -2.0440 -0.4553 34 1 3.1190 -1.1559 -0.5717 35 1 0.7648 -0.8195 2.3356 36 1 0.5672 -2.4895 1.7502 37 1 0.6598 -2.4021 4.2346 38 1 2.2677 -1.6450 4.1383 39 1 1.5367 -4.3886 3.0169 40 1 2.4344 -4.0982 4.5266 41 1 3.9344 -4.5923 2.5626 42 1 4.2414 -2.9950 3.2887 43 1 4.2716 -5.3744 1.2313 44 1 4.6247 -4.8113 -1.7663 45 1 5.6796 -7.0346 -2.9628 46 1 6.3717 -9.4761 -2.1158 47 1 5.8663 -9.6126 0.4497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157861759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:37 Heat of formation + Delta-G solvation = 69.487777 kcal Electronic energy + Delta-G solvation = -27442.386843 eV Core-core repulsion = 23820.773090 eV Total energy + Delta-G solvation = -3621.613753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.27466 -40.12405 -37.18929 -35.61310 -33.81942 -32.52813 -31.57229 -31.25314 -30.40960 -28.54739 -26.64839 -25.23309 -24.49050 -23.65083 -22.12641 -21.07738 -20.54169 -20.26480 -19.96968 -18.25294 -17.83874 -17.14788 -16.21221 -15.62931 -14.95753 -14.47354 -14.33610 -14.22777 -14.07478 -13.80923 -13.77404 -13.65603 -13.38402 -13.27519 -12.94036 -12.71951 -12.51742 -12.45140 -12.19655 -11.93382 -11.51266 -11.11379 -11.01713 -10.97464 -10.68123 -10.62571 -10.38089 -10.27508 -10.05654 -10.00738 -9.93876 -9.19147 -9.16170 -8.60303 -8.20690 -8.00227 -7.72182 -6.55280 -5.79724 -3.18052 0.72099 2.40651 2.95493 3.01581 3.47034 3.56721 3.59828 3.78224 3.83970 4.71263 4.73182 4.80568 4.86698 4.98427 5.02531 5.13250 5.17362 5.24497 5.43109 5.47166 5.53853 5.56052 5.62852 5.77263 5.83183 5.91817 5.96770 5.98541 6.02388 6.14534 6.22965 6.25633 6.32604 6.45477 6.51691 6.59959 6.65634 6.74545 6.80917 6.84996 6.91321 7.06156 7.23098 7.26480 7.87525 8.00932 8.27212 8.71689 8.85657 9.37626 10.03442 10.50918 11.35877 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.003953 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.265030 B = 7081.880469 C = 8246.346630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.601 5.601 3 C -0.364 4.364 4 H 0.046 0.954 5 C -0.016 4.016 6 N -0.893 5.893 7 Si 1.059 2.941 8 H -0.285 1.285 9 H -0.293 1.293 10 H -0.294 1.294 11 C 0.146 3.854 12 C 0.129 3.871 13 H 0.069 0.931 14 C -0.120 4.120 15 C -0.120 4.120 16 C -0.132 4.132 17 C 0.107 3.893 18 N -0.605 5.605 19 C 0.540 3.460 20 O -0.515 6.515 21 C -0.237 4.237 22 C 0.014 3.986 23 C 0.014 3.986 24 C -0.147 4.147 25 C -0.207 4.207 26 C 0.006 3.994 27 N -0.546 5.546 28 H 0.415 0.585 29 H -0.002 1.002 30 H 0.024 0.976 31 H 0.031 0.969 32 H 0.274 0.726 33 H 0.031 0.969 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.113 0.887 44 H 0.152 0.848 45 H 0.145 0.855 46 H 0.139 0.861 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.501 -19.003 9.609 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.326 5.326 3 C -0.493 4.493 4 H 0.063 0.937 5 C -0.221 4.221 6 N -0.531 5.531 7 Si 0.889 3.111 8 H -0.211 1.211 9 H -0.220 1.220 10 H -0.222 1.222 11 C 0.020 3.980 12 C 0.025 3.975 13 H 0.087 0.913 14 C -0.159 4.159 15 C -0.158 4.158 16 C -0.171 4.171 17 C -0.017 4.017 18 N -0.339 5.339 19 C 0.331 3.669 20 O -0.392 6.392 21 C -0.259 4.259 22 C -0.006 4.006 23 C -0.096 4.096 24 C -0.172 4.172 25 C -0.231 4.231 26 C -0.129 4.129 27 N -0.140 5.140 28 H 0.252 0.748 29 H 0.016 0.984 30 H 0.042 0.958 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.135 0.865 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.131 0.869 44 H 0.170 0.830 45 H 0.163 0.837 46 H 0.157 0.843 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.863 -18.040 8.824 20.450 hybrid contribution -1.765 -0.573 1.228 2.225 sum 2.097 -18.612 10.052 21.257 Atomic orbital electron populations 1.21152 0.86652 0.97792 0.96918 1.44088 0.99648 1.02769 1.86073 1.19749 1.09736 0.91724 1.28102 0.93652 1.25863 1.00708 1.02246 0.93316 1.70694 1.38246 1.25327 1.18815 0.83633 0.76691 0.75288 0.75458 1.21097 1.22045 1.22175 1.21756 0.99996 0.85391 0.90825 1.22249 0.91427 0.81810 1.02051 0.91343 1.21951 0.98192 1.01506 0.94201 1.21552 1.00165 0.95984 0.98092 1.21902 0.97269 0.98274 0.99614 1.21706 0.96945 0.97840 0.85179 1.48222 1.58252 1.22486 1.04987 1.16942 0.79750 0.85987 0.84220 1.90997 1.54332 1.63495 1.30422 1.22012 1.07419 0.98134 0.98296 1.20893 0.89996 0.90165 0.99591 1.18363 1.11052 0.92583 0.87567 1.21550 1.03150 0.94553 0.97981 1.20874 1.09222 0.98575 0.94465 1.22003 1.04499 0.89614 0.96738 1.42184 1.49905 1.11693 1.10266 0.74777 0.98418 0.95753 0.94983 0.91422 0.95056 0.86538 0.90189 0.92891 0.92424 0.92013 0.91867 0.91429 0.90555 0.91684 0.86944 0.83020 0.83749 0.84320 0.81660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.79 9.73 59.85 0.58 3.37 16 2 N -0.60 -16.06 2.24 -181.13 -0.41 -16.46 16 3 C -0.36 -10.63 9.36 -15.06 -0.14 -10.77 16 4 H 0.05 1.34 7.95 -52.48 -0.42 0.92 16 5 C -0.02 -0.48 4.87 -17.43 -0.08 -0.56 16 6 N -0.89 -28.35 12.25 55.49 0.68 -27.67 16 7 Si 1.06 26.38 29.99 -169.99 -5.10 21.28 16 8 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 9 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 C 0.15 3.71 2.85 -4.05 -0.01 3.70 16 12 C 0.13 2.70 3.19 -67.60 -0.22 2.49 16 13 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 14 C -0.12 -2.12 4.03 -26.59 -0.11 -2.23 16 15 C -0.12 -1.63 5.88 -26.67 -0.16 -1.79 16 16 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 17 C 0.11 1.35 6.33 -3.71 -0.02 1.33 16 18 N -0.61 -10.69 2.97 -168.64 -0.50 -11.19 16 19 C 0.54 10.17 7.31 -15.01 -0.11 10.06 16 20 O -0.51 -12.15 11.65 5.12 0.06 -12.09 16 21 C -0.24 -3.33 8.78 -39.27 -0.34 -3.68 16 22 C 0.01 0.19 9.39 -39.21 -0.37 -0.18 16 23 C 0.01 0.17 6.74 -83.91 -0.57 -0.40 16 24 C -0.15 -1.64 10.86 -38.99 -0.42 -2.06 16 25 C -0.21 -1.93 10.81 -39.98 -0.43 -2.37 16 26 C 0.01 0.05 11.90 -16.79 -0.20 -0.15 16 27 N -0.55 -4.85 5.94 -10.56 -0.06 -4.92 16 28 H 0.41 2.67 7.89 -40.82 -0.32 2.35 16 29 H 0.00 -0.05 8.14 -51.93 -0.42 -0.48 16 30 H 0.02 0.49 6.39 -51.93 -0.33 0.16 16 31 H 0.03 0.71 8.03 -51.93 -0.42 0.29 16 32 H 0.27 9.01 7.16 -40.82 -0.29 8.72 16 33 H 0.03 0.81 7.13 -51.93 -0.37 0.44 16 34 H 0.12 3.40 3.54 -51.93 -0.18 3.22 16 35 H 0.08 1.53 6.77 -51.93 -0.35 1.18 16 36 H 0.05 0.94 7.87 -51.93 -0.41 0.54 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.75 5.30 -51.93 -0.27 0.48 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.11 1.18 4.65 -52.49 -0.24 0.94 16 44 H 0.15 2.29 7.48 -52.48 -0.39 1.90 16 45 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 46 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.17 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -35.49 365.81 -9.61 -45.10 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.03 Total: 5.34 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.76 Total: -4.89 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.29 Total: -60.24 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.06 Total: -12.09 kcal Atomic # 14 Polarization: 26.38 SS G_CDS: -5.10 Total: 21.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.49 -9.61 -45.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157861759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.584 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds