Wall clock time and date at job start Tue Mar 31 2020 11:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36935 * 119.99728 * 2 1 4 4 H 1.08005 * 120.00213 * 37.49302 * 3 2 1 5 5 C 1.38805 * 120.00074 * 217.48414 * 3 2 1 6 6 N 1.31627 * 119.99746 * 25.86255 * 5 3 2 7 7 Si 1.86799 * 120.00334 * 205.85797 * 5 3 2 8 8 H 1.48503 * 109.47314 * 175.00661 * 7 5 3 9 9 H 1.48502 * 109.47226 * 295.00320 * 7 5 3 10 10 H 1.48503 * 109.47080 * 55.00471 * 7 5 3 11 11 C 1.46493 * 119.99936 * 180.02562 * 2 1 3 12 12 C 1.52993 * 109.47381 * 266.23719 * 11 2 1 13 13 H 1.09004 * 109.58478 * 298.59476 * 12 11 2 14 14 C 1.53194 * 109.58868 * 58.87596 * 12 11 2 15 15 C 1.53076 * 109.29394 * 174.28285 * 14 12 11 16 16 C 1.53041 * 109.65792 * 298.84614 * 15 14 12 17 17 C 1.53194 * 109.31176 * 61.30344 * 16 15 14 18 18 N 1.46922 * 108.77629 * 305.36447 * 17 16 15 19 19 C 1.34784 * 120.63159 * 233.58940 * 18 17 16 20 20 O 1.21776 * 120.00050 * 184.82176 * 19 18 17 21 21 C 1.41521 * 119.99762 * 4.81777 * 19 18 17 22 22 C 1.35610 * 119.99758 * 184.08757 * 21 19 18 23 23 C 1.41675 * 120.00064 * 185.27612 * 22 21 19 24 24 C 1.38278 * 126.26204 * 180.02562 * 23 22 21 25 25 C 1.39787 * 107.07985 * 179.97438 * 24 23 22 26 26 C 1.35497 * 107.91053 * 359.97438 * 25 24 23 27 27 N 1.35763 * 108.90817 * 359.75303 * 26 25 24 28 28 H 0.96996 * 125.68776 * 180.27957 * 27 26 25 29 29 H 1.08998 * 109.46943 * 91.40703 * 1 2 3 30 30 H 1.08995 * 109.46864 * 211.41139 * 1 2 3 31 31 H 1.09004 * 109.47050 * 331.40857 * 1 2 3 32 32 H 0.96998 * 120.00292 * 5.32663 * 6 5 3 33 33 H 1.09003 * 109.47335 * 26.24208 * 11 2 1 34 34 H 1.09000 * 109.46851 * 146.23319 * 11 2 1 35 35 H 1.08996 * 109.49441 * 294.37357 * 14 12 11 36 36 H 1.08998 * 109.49283 * 54.47435 * 14 12 11 37 37 H 1.08998 * 109.44821 * 178.75802 * 15 14 12 38 38 H 1.08995 * 109.33583 * 58.86542 * 15 14 12 39 39 H 1.08998 * 109.49953 * 301.35001 * 16 15 14 40 40 H 1.09003 * 109.52591 * 181.27222 * 16 15 14 41 41 H 1.09003 * 109.58586 * 185.57718 * 17 16 15 42 42 H 1.08996 * 109.70249 * 65.22174 * 17 16 15 43 43 H 1.08001 * 119.99743 * 4.09090 * 21 19 18 44 44 H 1.08005 * 120.00127 * 5.27780 * 22 21 19 45 45 H 1.08006 * 126.45840 * 359.94191 * 24 23 22 46 46 H 1.08002 * 126.04722 * 179.97438 * 25 24 23 47 47 H 1.08002 * 125.54668 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7770 2.0247 0.5693 5 6 3.3228 1.3101 -0.7315 6 7 3.5252 0.5474 -1.7850 7 14 4.6141 2.5596 -0.2210 8 1 5.8138 2.4123 -1.0838 9 1 4.0627 3.9304 -0.3699 10 1 4.9925 2.3294 1.1965 11 6 2.1975 -1.2687 -0.0006 12 6 2.5345 -1.6637 1.4386 13 1 3.1718 -0.9015 1.8870 14 6 1.2424 -1.7956 2.2509 15 6 1.5749 -2.3281 3.6470 16 6 2.2192 -3.7114 3.5305 17 6 3.5226 -3.5976 2.7335 18 7 3.2339 -2.9558 1.4438 19 6 3.6037 -3.5411 0.2874 20 8 3.4379 -2.9597 -0.7696 21 6 4.1849 -4.8314 0.3017 22 6 4.6329 -5.3861 -0.8519 23 6 5.1116 -6.7195 -0.8576 24 6 5.5962 -7.4098 -1.9534 25 6 5.9571 -8.6849 -1.5086 26 6 5.6948 -8.7529 -0.1810 27 7 5.1859 -7.5626 0.2284 28 1 4.9173 -7.3437 1.1343 29 1 -0.3633 -0.0252 -1.0273 30 1 -0.3633 -0.8770 0.5356 31 1 -0.3633 0.9024 0.4918 32 1 2.8240 -0.0462 -2.0961 33 1 1.5809 -2.0440 -0.4553 34 1 3.1190 -1.1559 -0.5717 35 1 0.7648 -0.8195 2.3356 36 1 0.5672 -2.4895 1.7502 37 1 0.6598 -2.4021 4.2346 38 1 2.2677 -1.6450 4.1383 39 1 1.5367 -4.3886 3.0169 40 1 2.4344 -4.0982 4.5266 41 1 3.9344 -4.5923 2.5626 42 1 4.2414 -2.9950 3.2887 43 1 4.2716 -5.3744 1.2313 44 1 4.6247 -4.8113 -1.7663 45 1 5.6796 -7.0346 -2.9628 46 1 6.3717 -9.4761 -2.1158 47 1 5.8663 -9.6126 0.4497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157861759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:37 Heat of formation + Delta-G solvation = 46.932084 kcal Electronic energy + Delta-G solvation = -27443.364931 eV Core-core repulsion = 23820.773090 eV Total energy + Delta-G solvation = -3622.591841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.08541 -41.51110 -38.63723 -37.48965 -35.01083 -33.84054 -33.45990 -32.14124 -32.00519 -29.52511 -28.22911 -27.30048 -25.96056 -24.76168 -23.66503 -22.31247 -21.89078 -21.30957 -21.01663 -19.50935 -19.42341 -18.61799 -17.54074 -17.10680 -16.40586 -15.88340 -15.75695 -15.47059 -15.41009 -15.25553 -15.19923 -14.92775 -14.74826 -14.62532 -14.33538 -14.09834 -13.96773 -13.31550 -13.21823 -13.18161 -13.05436 -12.88156 -12.78018 -12.61334 -12.31886 -11.95945 -11.92250 -11.89390 -11.65012 -11.44612 -11.38059 -11.20390 -10.44872 -10.23638 -9.90044 -9.48597 -8.81223 -8.59761 -8.07993 -5.51187 -0.32202 1.51805 1.58275 1.61357 1.79915 2.04587 2.12762 2.33911 2.58190 2.65734 3.24774 3.64772 3.74814 3.79751 3.93807 3.97662 4.05629 4.13825 4.32796 4.35275 4.38922 4.44194 4.50848 4.54403 4.58214 4.60487 4.68388 4.79720 4.85725 4.90934 4.96019 4.98180 5.01257 5.09701 5.16372 5.23003 5.23773 5.35092 5.38815 5.44165 5.60124 5.90112 5.93303 5.95070 6.05373 6.38920 6.60162 6.65607 7.13619 7.37781 7.82715 8.27661 8.97357 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013172 B = 0.003953 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.265030 B = 7081.880469 C = 8246.346630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.619 5.619 3 C -0.368 4.368 4 H 0.043 0.957 5 C -0.069 4.069 6 N -0.920 5.920 7 Si 1.111 2.889 8 H -0.293 1.293 9 H -0.271 1.271 10 H -0.277 1.277 11 C 0.159 3.841 12 C 0.139 3.861 13 H 0.038 0.962 14 C -0.110 4.110 15 C -0.116 4.116 16 C -0.124 4.124 17 C 0.098 3.902 18 N -0.607 5.607 19 C 0.528 3.472 20 O -0.582 6.582 21 C -0.252 4.252 22 C 0.032 3.968 23 C -0.020 4.020 24 C -0.155 4.155 25 C -0.228 4.228 26 C 0.037 3.963 27 N -0.536 5.536 28 H 0.429 0.571 29 H -0.015 1.015 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.251 0.749 33 H 0.011 0.989 34 H 0.080 0.920 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.155 0.845 44 H 0.121 0.879 45 H 0.142 0.858 46 H 0.158 0.842 47 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 -21.970 13.279 25.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.345 5.345 3 C -0.498 4.498 4 H 0.061 0.939 5 C -0.268 4.268 6 N -0.559 5.559 7 Si 0.934 3.066 8 H -0.219 1.219 9 H -0.196 1.196 10 H -0.203 1.203 11 C 0.033 3.967 12 C 0.033 3.967 13 H 0.056 0.944 14 C -0.148 4.148 15 C -0.153 4.153 16 C -0.162 4.162 17 C -0.024 4.024 18 N -0.340 5.340 19 C 0.323 3.677 20 O -0.464 6.464 21 C -0.273 4.273 22 C 0.011 3.989 23 C -0.129 4.129 24 C -0.181 4.181 25 C -0.252 4.252 26 C -0.099 4.099 27 N -0.131 5.131 28 H 0.269 0.731 29 H 0.003 0.997 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.030 0.970 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.127 0.873 41 H 0.130 0.870 42 H 0.089 0.911 43 H 0.173 0.827 44 H 0.139 0.861 45 H 0.160 0.840 46 H 0.176 0.824 47 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.613 -21.021 12.574 24.925 hybrid contribution -1.992 0.165 -0.006 1.999 sum 2.621 -20.856 12.568 24.491 Atomic orbital electron populations 1.21190 0.84902 0.99467 0.96619 1.44345 1.01048 1.02647 1.86428 1.19983 1.10094 0.92513 1.27164 0.93924 1.27357 1.03150 1.03574 0.92705 1.70840 1.37521 1.26753 1.20807 0.82967 0.73904 0.74026 0.75684 1.21869 1.19610 1.20288 1.21406 0.97661 0.84237 0.93369 1.21691 0.92987 0.83097 0.98895 0.94369 1.21795 0.95789 1.00700 0.96559 1.21542 1.01565 0.97265 0.94978 1.21897 0.96009 0.96743 1.01545 1.22133 0.98330 0.99234 0.82678 1.48281 1.57485 1.21274 1.06973 1.17727 0.79120 0.87340 0.83545 1.90980 1.57260 1.65458 1.32720 1.21814 1.09173 0.96221 1.00114 1.20764 0.88667 0.91062 0.98409 1.18071 1.13624 0.92150 0.89097 1.21854 1.02449 0.95716 0.98081 1.21221 1.10057 0.98222 0.95687 1.22754 1.00719 0.89794 0.96666 1.42194 1.49223 1.11405 1.10277 0.73142 0.99660 0.93137 0.94064 0.93900 0.97040 0.90280 0.92152 0.93303 0.90078 0.92101 0.91674 0.87259 0.87049 0.91068 0.82747 0.86068 0.84050 0.82449 0.77281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.91 9.73 127.77 1.24 7.15 16 2 N -0.62 -34.78 2.24 -726.96 -1.63 -36.41 16 3 C -0.37 -22.32 9.36 84.03 0.79 -21.53 16 4 H 0.04 2.58 7.95 -2.91 -0.02 2.55 16 5 C -0.07 -4.27 4.87 84.86 0.41 -3.85 16 6 N -0.92 -61.94 12.25 21.65 0.27 -61.68 16 7 Si 1.11 54.61 29.99 68.60 2.06 56.67 16 8 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 C 0.16 8.62 2.85 86.38 0.25 8.87 16 12 C 0.14 6.05 3.19 44.97 0.14 6.19 16 13 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 14 C -0.11 -3.86 4.03 30.68 0.12 -3.74 16 15 C -0.12 -2.83 5.88 30.63 0.18 -2.65 16 16 C -0.12 -2.31 6.08 30.67 0.19 -2.12 16 17 C 0.10 2.19 6.33 86.36 0.55 2.73 16 18 N -0.61 -21.68 2.97 -805.62 -2.40 -24.08 16 19 C 0.53 20.87 7.31 85.05 0.62 21.49 16 20 O -0.58 -30.09 11.65 -4.59 -0.05 -30.14 16 21 C -0.25 -7.06 8.78 22.47 0.20 -6.86 16 22 C 0.03 0.91 9.39 22.51 0.21 1.12 16 23 C -0.02 -0.44 6.74 39.08 0.26 -0.17 16 24 C -0.16 -3.33 10.86 22.65 0.25 -3.08 16 25 C -0.23 -3.61 10.81 22.01 0.24 -3.37 16 26 C 0.04 0.42 11.90 83.45 0.99 1.41 16 27 N -0.54 -7.64 5.94 -187.33 -1.11 -8.75 16 28 H 0.43 3.62 7.89 -92.71 -0.73 2.88 16 29 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H 0.05 2.11 6.39 -2.39 -0.02 2.10 16 31 H 0.04 1.86 8.03 -2.39 -0.02 1.85 16 32 H 0.25 17.82 7.16 -92.71 -0.66 17.15 16 33 H 0.01 0.64 7.13 -2.39 -0.02 0.62 16 34 H 0.08 5.02 3.54 -2.39 -0.01 5.01 16 35 H 0.06 2.33 6.77 -2.39 -0.02 2.31 16 36 H 0.05 1.73 7.87 -2.39 -0.02 1.71 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.11 1.71 5.30 -2.39 -0.01 1.69 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.16 2.79 4.65 -2.91 -0.01 2.77 16 44 H 0.12 4.12 7.48 -2.91 -0.02 4.10 16 45 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 46 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 47 H 0.21 0.54 8.06 -2.91 -0.02 0.52 16 Total: -1.00 -86.21 365.81 4.13 -82.09 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.35 Total: 20.73 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 6.64 Total: 1.57 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -4.87 Total: -130.91 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.05 Total: -30.14 kcal Atomic # 14 Polarization: 54.61 SS G_CDS: 2.06 Total: 56.67 kcal Total: -86.21 4.13 -82.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157861759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.018 kcal (2) G-P(sol) polarization free energy of solvation -86.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds