Wall clock time and date at job start Tue Mar 31 2020 11:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 120.00070 * 2 1 4 4 H 1.08000 * 119.99848 * 21.05617 * 3 2 1 5 5 C 1.38809 * 119.99986 * 201.05381 * 3 2 1 6 6 N 1.31620 * 120.00068 * 328.43678 * 5 3 2 7 7 Si 1.86795 * 120.00007 * 148.44291 * 5 3 2 8 8 H 1.48499 * 109.47312 * 175.00017 * 7 5 3 9 9 H 1.48505 * 109.47019 * 294.99942 * 7 5 3 10 10 H 1.48496 * 109.47450 * 54.99768 * 7 5 3 11 11 C 1.46496 * 119.99880 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.47165 * 261.33499 * 11 2 1 13 13 H 1.08996 * 109.58925 * 218.47450 * 12 11 2 14 14 C 1.53195 * 109.58497 * 338.75404 * 12 11 2 15 15 C 1.53042 * 109.31335 * 174.41844 * 14 12 11 16 16 C 1.53038 * 109.54274 * 298.64136 * 15 14 12 17 17 C 1.53191 * 109.31507 * 61.35884 * 16 15 14 18 18 N 1.46930 * 109.58929 * 98.18551 * 12 11 2 19 19 C 1.34779 * 120.62832 * 6.60945 * 18 12 11 20 20 O 1.21778 * 119.99574 * 247.24670 * 19 18 12 21 21 C 1.41517 * 120.00320 * 67.24798 * 19 18 12 22 22 C 1.35610 * 119.99889 * 180.65455 * 21 19 18 23 23 C 1.41667 * 120.00161 * 351.46884 * 22 21 19 24 24 C 1.38277 * 126.25866 * 295.60355 * 23 22 21 25 25 C 1.39788 * 107.07850 * 179.88005 * 24 23 22 26 26 C 1.35503 * 107.90868 * 0.38931 * 25 24 23 27 27 N 1.35751 * 108.91074 * 359.75582 * 26 25 24 28 28 H 0.97002 * 125.69186 * 179.97438 * 27 26 25 29 29 H 1.09001 * 109.47022 * 91.71125 * 1 2 3 30 30 H 1.08999 * 109.46823 * 211.70708 * 1 2 3 31 31 H 1.08995 * 109.46687 * 331.70988 * 1 2 3 32 32 H 0.97003 * 119.99951 * 344.40635 * 6 5 3 33 33 H 1.09003 * 109.47638 * 21.33582 * 11 2 1 34 34 H 1.09003 * 109.47567 * 141.33527 * 11 2 1 35 35 H 1.08997 * 109.49596 * 294.37299 * 14 12 11 36 36 H 1.08998 * 109.49383 * 54.44117 * 14 12 11 37 37 H 1.09007 * 109.45658 * 58.66085 * 15 14 12 38 38 H 1.09004 * 109.46056 * 178.62459 * 15 14 12 39 39 H 1.08999 * 109.49855 * 181.31896 * 16 15 14 40 40 H 1.09006 * 109.49054 * 301.37776 * 16 15 14 41 41 H 1.08996 * 109.58399 * 65.15671 * 17 16 15 42 42 H 1.08993 * 109.58335 * 185.43794 * 17 16 15 43 43 H 1.08006 * 119.99700 * 0.65233 * 21 19 18 44 44 H 1.08008 * 119.99698 * 171.47026 * 22 21 19 45 45 H 1.08004 * 126.46594 * 0.03022 * 24 23 22 46 46 H 1.08001 * 126.04744 * 180.17521 * 25 24 23 47 47 H 1.08001 * 125.54270 * 179.76027 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.6638 2.0899 0.3360 5 6 3.4683 1.2260 -0.4319 6 7 4.2510 0.1828 -0.2542 7 14 4.1320 2.7605 -1.2649 8 1 5.5859 2.5963 -1.5191 9 1 3.4246 2.9692 -2.5539 10 1 3.9132 3.9359 -0.3842 11 6 2.1975 -1.2687 -0.0006 12 6 2.6407 -1.6024 1.4253 13 1 3.6375 -2.0427 1.4045 14 6 2.6616 -0.3239 2.2690 15 6 2.9696 -0.6829 3.7245 16 6 1.8736 -1.6024 4.2679 17 6 1.8438 -2.8953 3.4468 18 7 1.6947 -2.5530 2.0255 19 6 0.7072 -3.0976 1.2874 20 8 -0.4542 -2.8159 1.5216 21 6 1.0199 -3.9967 0.2403 22 6 0.0270 -4.5344 -0.5109 23 6 -1.3262 -4.3423 -0.1385 24 6 -1.9321 -4.8110 1.0127 25 6 -3.2649 -4.3909 0.9755 26 6 -3.4510 -3.6970 -0.1734 27 7 -2.2804 -3.6600 -0.8597 28 1 -2.1396 -3.2257 -1.7155 29 1 -0.3633 -0.0307 -1.0272 30 1 -0.3633 -0.8743 0.5401 31 1 -0.3632 0.9049 0.4870 32 1 3.9930 -0.5172 0.3657 33 1 1.5502 -2.0619 -0.3748 34 1 3.0741 -1.1820 -0.6426 35 1 3.4302 0.3496 1.8899 36 1 1.6892 0.1652 2.2125 37 1 3.9312 -1.1937 3.7768 38 1 3.0093 0.2276 4.3225 39 1 2.0813 -1.8387 5.3115 40 1 0.9085 -1.1012 4.1935 41 1 2.7750 -3.4425 3.5930 42 1 1.0037 -3.5118 3.7666 43 1 2.0493 -4.2547 0.0394 44 1 0.2681 -5.1090 -1.3931 45 1 -1.4634 -5.3901 1.7947 46 1 -4.0146 -4.5880 1.7275 47 1 -4.3797 -3.2465 -0.4912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157861760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:40 Heat of formation + Delta-G solvation = 100.876874 kcal Electronic energy + Delta-G solvation = -28967.489463 eV Core-core repulsion = 25347.236844 eV Total energy + Delta-G solvation = -3620.252619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.13081 -41.26567 -39.12195 -37.33497 -34.74580 -33.87293 -33.20997 -32.15403 -31.77890 -29.22068 -28.29717 -27.34898 -26.16156 -24.03767 -23.87384 -21.98759 -21.84189 -21.40217 -20.80334 -20.15547 -19.58611 -18.09407 -17.54765 -16.90324 -16.12737 -15.98659 -15.79692 -15.64880 -15.30534 -15.28182 -14.89845 -14.70099 -14.63257 -14.32658 -14.26626 -14.00655 -13.77827 -13.47677 -13.17666 -13.04503 -13.01103 -12.92278 -12.70314 -12.39904 -12.32585 -11.92297 -11.90644 -11.74180 -11.51932 -11.43121 -11.24300 -10.90891 -10.45738 -10.27332 -9.63758 -9.00096 -8.86153 -8.49720 -8.08351 -5.15488 -0.18153 1.40835 1.61745 1.65353 1.85640 2.00551 2.21920 2.40181 2.69575 2.70373 3.10297 3.55122 3.84132 4.02367 4.08382 4.09564 4.15940 4.35304 4.42891 4.43811 4.45611 4.52199 4.60653 4.63108 4.64591 4.73789 4.79988 4.80705 4.90145 4.93340 4.94786 5.03608 5.09573 5.17984 5.20891 5.29445 5.40679 5.42575 5.47476 5.52853 5.76156 5.84847 6.10780 6.24523 6.27152 6.54530 6.70950 6.81349 7.06883 7.10409 7.82929 8.23899 9.09677 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014783 B = 0.005180 C = 0.004356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.630381 B = 5404.548082 C = 6425.708405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.140 3.860 2 N -0.615 5.615 3 C -0.344 4.344 4 H 0.049 0.951 5 C -0.038 4.038 6 N -0.946 5.946 7 Si 1.069 2.931 8 H -0.291 1.291 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.110 3.890 12 C 0.162 3.838 13 H 0.051 0.949 14 C -0.098 4.098 15 C -0.116 4.116 16 C -0.123 4.123 17 C 0.139 3.861 18 N -0.695 5.695 19 C 0.585 3.415 20 O -0.495 6.495 21 C -0.213 4.213 22 C 0.000 4.000 23 C 0.017 3.983 24 C -0.162 4.162 25 C -0.221 4.221 26 C -0.008 4.008 27 N -0.538 5.538 28 H 0.421 0.579 29 H 0.003 0.997 30 H 0.044 0.956 31 H 0.022 0.978 32 H 0.289 0.711 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.037 0.963 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.147 0.853 44 H 0.163 0.837 45 H 0.120 0.880 46 H 0.140 0.860 47 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.697 -11.760 2.449 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.340 5.340 3 C -0.472 4.472 4 H 0.066 0.934 5 C -0.235 4.235 6 N -0.595 5.595 7 Si 0.896 3.104 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.212 1.212 11 C -0.016 4.016 12 C 0.056 3.944 13 H 0.068 0.932 14 C -0.137 4.137 15 C -0.154 4.154 16 C -0.161 4.161 17 C 0.017 3.983 18 N -0.437 5.437 19 C 0.380 3.620 20 O -0.370 6.370 21 C -0.236 4.236 22 C -0.020 4.020 23 C -0.095 4.095 24 C -0.187 4.187 25 C -0.245 4.245 26 C -0.142 4.142 27 N -0.132 5.132 28 H 0.259 0.741 29 H 0.021 0.979 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.109 0.891 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.164 0.836 44 H 0.180 0.820 45 H 0.138 0.862 46 H 0.158 0.842 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -7.122 -10.941 1.563 13.149 hybrid contribution -1.076 0.173 0.705 1.298 sum -8.198 -10.769 2.267 13.723 Atomic orbital electron populations 1.20904 0.83488 0.99148 0.97051 1.44018 1.00810 1.01979 1.87183 1.19984 0.97638 0.86905 1.42652 0.93352 1.26411 0.92840 1.04219 1.00035 1.70714 1.39471 1.13261 1.36061 0.83563 0.75405 0.74477 0.76947 1.21687 1.21861 1.21155 1.22503 0.97585 0.87045 0.94467 1.21573 0.90456 0.87887 0.94469 0.93165 1.21682 1.01134 0.96674 0.94191 1.21554 0.98765 0.99203 0.95875 1.21832 0.97977 0.96425 0.99909 1.21363 1.01439 0.95970 0.79566 1.47444 1.34612 1.51186 1.10502 1.17281 0.84110 0.79174 0.81417 1.90826 1.22688 1.57088 1.66371 1.22982 1.01430 0.99649 0.99509 1.21041 0.89139 0.94393 0.97403 1.18211 0.90204 1.05255 0.95844 1.21053 0.95294 1.06046 0.96286 1.20895 0.97215 1.06573 0.99830 1.22199 0.90705 1.05989 0.95282 1.42034 1.08687 1.42709 1.19745 0.74087 0.97943 0.93717 0.95910 0.89392 0.93090 0.89664 0.92468 0.94336 0.91645 0.92713 0.89057 0.94397 0.90651 0.91173 0.83576 0.81972 0.86194 0.84247 0.79536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.43 10.53 127.77 1.35 7.77 16 2 N -0.62 -30.76 1.88 -726.94 -1.37 -32.13 16 3 C -0.34 -18.72 7.14 84.03 0.60 -18.12 16 4 H 0.05 2.74 7.98 -2.91 -0.02 2.72 16 5 C -0.04 -2.06 4.65 84.86 0.39 -1.67 16 6 N -0.95 -52.43 11.32 21.65 0.25 -52.19 16 7 Si 1.07 49.33 30.02 68.60 2.06 51.39 16 8 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 9 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 11 C 0.11 5.02 4.88 86.38 0.42 5.44 16 12 C 0.16 6.63 2.42 44.97 0.11 6.73 16 13 H 0.05 2.08 7.60 -2.39 -0.02 2.07 16 14 C -0.10 -4.30 3.73 30.67 0.11 -4.18 16 15 C -0.12 -4.03 5.88 30.62 0.18 -3.85 16 16 C -0.12 -3.71 6.08 30.67 0.19 -3.53 16 17 C 0.14 4.11 6.49 86.36 0.56 4.67 16 18 N -0.69 -24.63 2.88 -805.55 -2.32 -26.95 16 19 C 0.58 20.55 4.11 85.05 0.35 20.90 16 20 O -0.50 -19.51 11.65 -4.60 -0.05 -19.57 16 21 C -0.21 -6.15 7.72 22.47 0.17 -5.98 16 22 C 0.00 0.00 9.96 22.51 0.22 0.23 16 23 C 0.02 0.46 4.73 39.08 0.19 0.65 16 24 C -0.16 -4.79 8.82 22.65 0.20 -4.59 16 25 C -0.22 -5.98 10.81 22.01 0.24 -5.74 16 26 C -0.01 -0.19 11.90 83.45 0.99 0.80 16 27 N -0.54 -13.22 6.11 -187.34 -1.15 -14.36 16 28 H 0.42 8.47 8.96 -92.71 -0.83 7.64 16 29 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.04 2.04 5.29 -2.39 -0.01 2.03 16 31 H 0.02 1.04 8.01 -2.39 -0.02 1.03 16 32 H 0.29 15.16 2.62 -92.71 -0.24 14.91 16 33 H 0.05 2.15 4.17 -2.39 -0.01 2.14 16 34 H 0.09 4.41 5.02 -2.39 -0.01 4.40 16 35 H 0.06 2.91 5.20 -2.39 -0.01 2.90 16 36 H 0.04 1.93 6.53 -2.39 -0.02 1.91 16 37 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 1.98 7.93 -2.39 -0.02 1.96 16 43 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 44 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 45 H 0.12 3.50 8.06 -2.91 -0.02 3.48 16 46 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 47 H 0.19 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -66.41 353.53 4.36 -62.04 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.67 Total: 32.22 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 6.28 Total: -0.46 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -4.59 Total: -125.63 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.05 Total: -19.57 kcal Atomic # 14 Polarization: 49.33 SS G_CDS: 2.06 Total: 51.39 kcal Total: -66.41 4.36 -62.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157861760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.919 kcal (2) G-P(sol) polarization free energy of solvation -66.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds