Wall clock time and date at job start Tue Mar 31 2020 11:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00144 * 2 1 4 4 C 1.34773 * 119.99678 * 180.02562 * 2 1 3 5 5 O 1.21592 * 120.00471 * 354.18814 * 4 2 1 6 6 C 1.47543 * 119.99781 * 174.19322 * 4 2 1 7 7 C 1.40353 * 120.47472 * 148.15399 * 6 4 2 8 8 C 1.36854 * 118.49172 * 179.76652 * 7 6 4 9 9 C 1.39399 * 119.37717 * 0.49953 * 8 7 6 10 10 N 1.38461 * 119.53746 * 179.76872 * 9 8 7 11 11 C 1.46500 * 119.99979 * 191.44252 * 10 9 8 12 12 C 1.50700 * 109.47415 * 269.99978 * 11 10 9 13 13 H 1.08003 * 119.99644 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00036 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99654 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00144 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47057 * 89.99724 * 16 14 12 18 18 H 1.48494 * 109.47084 * 209.99950 * 16 14 12 19 19 H 1.48500 * 109.46839 * 330.00186 * 16 14 12 20 20 C 1.46503 * 119.99916 * 11.44376 * 10 9 8 21 21 C 1.54265 * 110.03050 * 242.50260 * 20 10 9 22 22 C 1.54883 * 104.19744 * 217.10703 * 21 20 10 23 23 C 1.54891 * 102.75096 * 37.94350 * 22 21 20 24 24 C 1.53876 * 110.02907 * 125.34039 * 20 10 9 25 25 N 1.32602 * 120.92206 * 359.48641 * 9 8 7 26 26 C 1.31680 * 121.63738 * 0.25525 * 25 9 8 27 27 H 1.08993 * 109.47309 * 270.00178 * 1 2 3 28 28 H 1.09001 * 109.46842 * 30.00180 * 1 2 3 29 29 H 1.09002 * 109.47149 * 149.99760 * 1 2 3 30 30 H 1.08998 * 109.47386 * 174.71582 * 3 2 1 31 31 H 1.09006 * 109.47301 * 294.71689 * 3 2 1 32 32 H 1.09005 * 109.47106 * 54.71654 * 3 2 1 33 33 H 1.08003 * 120.75583 * 0.03819 * 7 6 4 34 34 H 1.07996 * 120.31126 * 180.26055 * 8 7 6 35 35 H 1.09000 * 109.46815 * 30.00236 * 11 10 9 36 36 H 1.09003 * 109.47116 * 149.99834 * 11 10 9 37 37 H 0.97001 * 119.99877 * 180.02562 * 15 14 12 38 38 H 1.08991 * 110.05644 * 3.92334 * 20 10 9 39 39 H 1.09002 * 110.48718 * 335.79062 * 21 20 10 40 40 H 1.09000 * 110.48332 * 98.42998 * 21 20 10 41 41 H 1.09001 * 110.75886 * 279.62859 * 22 21 20 42 42 H 1.09002 * 110.91578 * 156.33551 * 22 21 20 43 43 H 1.08993 * 110.48882 * 203.38063 * 23 22 21 44 44 H 1.09003 * 110.47900 * 80.73594 * 23 22 21 45 45 H 1.08999 * 110.03045 * 238.56438 * 24 20 10 46 46 H 1.08998 * 110.03903 * 359.94995 * 24 20 10 47 47 H 1.08000 * 119.74027 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5356 -2.2176 0.1056 6 6 3.6086 -1.1705 -0.1298 7 6 4.3758 -2.1663 0.4943 8 6 5.7357 -2.1332 0.3436 9 6 6.3155 -1.1140 -0.4103 10 7 7.6913 -1.0746 -0.5609 11 6 8.3321 0.1135 -1.1302 12 6 8.4252 -0.0344 -2.6270 13 1 8.0447 -0.9242 -3.1064 14 6 8.9952 0.9668 -3.3845 15 7 9.0760 0.8379 -4.6908 16 14 9.6514 2.5068 -2.5556 17 1 11.0785 2.3063 -2.1972 18 1 9.5315 3.6586 -3.4851 19 1 8.8657 2.7797 -1.3253 20 6 8.5062 -2.2210 -0.1511 21 6 9.4676 -1.8076 0.9823 22 6 10.7679 -2.5942 0.6833 23 6 10.8501 -2.5439 -0.8626 24 6 9.3852 -2.6890 -1.3242 25 7 5.5675 -0.1850 -0.9897 26 6 4.2557 -0.1832 -0.8741 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 3.2654 1.0717 0.0946 31 1 2.0071 1.7982 -0.9336 32 1 1.8651 1.8801 0.8389 33 1 3.9035 -2.9436 1.0767 34 1 6.3540 -2.8873 0.8076 35 1 7.7404 0.9965 -0.8884 36 1 9.3332 0.2216 -0.7128 37 1 9.4773 1.5420 -5.2238 38 1 7.8640 -3.0359 0.1826 39 1 9.6552 -0.7343 0.9510 40 1 9.0612 -2.0967 1.9516 41 1 10.6857 -3.6235 1.0324 42 1 11.6315 -2.1035 1.1323 43 1 11.4525 -3.3701 -1.2397 44 1 11.2610 -1.5894 -1.1918 45 1 9.1695 -3.7312 -1.5597 46 1 9.2049 -2.0638 -2.1987 47 1 3.6762 0.5882 -1.3594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166535227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:58 Heat of formation + Delta-G solvation = 32.387290 kcal Electronic energy + Delta-G solvation = -27257.758560 eV Core-core repulsion = 23634.536009 eV Total energy + Delta-G solvation = -3623.222551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.53827 -39.27240 -37.97062 -35.56769 -34.72426 -32.65656 -32.10790 -30.64852 -28.69722 -28.25523 -27.85546 -26.84905 -25.71764 -23.44171 -22.92673 -21.34510 -20.31704 -19.79685 -19.11509 -17.44380 -17.20630 -16.85070 -16.42382 -15.91555 -15.37583 -15.22133 -14.83474 -14.38937 -14.29624 -13.86869 -13.70133 -13.41361 -12.98411 -12.92879 -12.77327 -12.64304 -12.52395 -12.40494 -12.14454 -11.93397 -11.64397 -11.55380 -11.32858 -10.99125 -10.80975 -10.66258 -10.62625 -10.36533 -10.18932 -10.10071 -9.87248 -9.58057 -9.42081 -9.09456 -8.79397 -8.70437 -8.60231 -6.93170 -6.10936 -4.07670 1.31470 1.74406 3.00232 3.11470 3.22444 3.30678 3.33300 3.53090 4.28987 4.35771 4.68781 4.80962 4.91757 4.97488 5.05286 5.14126 5.21113 5.22085 5.23896 5.26964 5.35729 5.49287 5.56018 5.61245 5.68062 5.70269 5.80666 5.85466 5.89065 5.97272 6.00294 6.10113 6.17679 6.23754 6.30867 6.41556 6.46146 6.54682 6.60077 6.73532 6.78453 6.97483 7.11849 7.36698 7.56692 7.61897 8.00842 8.27692 8.46329 8.67696 8.92513 9.48863 11.01851 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.004289 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.121420 B = 6527.339341 C = 8051.251474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.623 5.623 3 C 0.057 3.943 4 C 0.577 3.423 5 O -0.550 6.550 6 C -0.287 4.287 7 C 0.021 3.979 8 C -0.264 4.264 9 C 0.439 3.561 10 N -0.565 5.565 11 C 0.223 3.777 12 C -0.515 4.515 13 H 0.078 0.922 14 C 0.074 3.926 15 N -0.896 5.896 16 Si 0.869 3.131 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.265 1.265 20 C 0.147 3.853 21 C -0.136 4.136 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.155 4.155 25 N -0.521 5.521 26 C 0.184 3.816 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.040 0.960 36 H 0.025 0.975 37 H 0.264 0.736 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.056 0.944 46 H 0.120 0.880 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.508 -1.950 12.228 13.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.357 5.357 3 C -0.086 4.086 4 C 0.368 3.632 5 O -0.429 6.429 6 C -0.296 4.296 7 C -0.004 4.004 8 C -0.289 4.289 9 C 0.201 3.799 10 N -0.269 5.269 11 C 0.103 3.897 12 C -0.553 4.553 13 H 0.095 0.905 14 C -0.128 4.128 15 N -0.534 5.534 16 Si 0.696 3.304 17 H -0.203 1.203 18 H -0.211 1.211 19 H -0.190 1.190 20 C 0.043 3.957 21 C -0.175 4.175 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.193 4.193 25 N -0.237 5.237 26 C 0.021 3.979 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.138 0.862 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.059 -1.750 11.602 13.206 hybrid contribution -0.076 0.370 0.650 0.752 sum -6.135 -1.380 12.253 13.772 Atomic orbital electron populations 1.21562 0.79283 1.02883 1.01590 1.47579 1.06843 1.06458 1.74801 1.22451 0.99241 0.85072 1.01860 1.18187 0.87085 0.82864 0.75110 1.90725 1.70174 1.31284 1.50675 1.20247 0.93058 1.03433 1.12904 1.20849 0.92476 0.94169 0.92946 1.21120 0.95521 1.03635 1.08625 1.18637 0.85936 0.88606 0.86702 1.46983 1.01048 1.17576 1.61326 1.19665 0.92349 0.82926 0.94805 1.21247 1.39158 1.05540 0.89365 0.90457 1.24822 0.95613 0.97751 0.94618 1.69890 1.44844 1.34014 1.04689 0.86955 0.79569 0.83827 0.80008 1.20278 1.21092 1.18971 1.21767 0.92038 0.87523 0.94372 1.22794 0.95582 1.01441 0.97677 1.22452 0.97050 0.99604 0.96914 1.22273 0.96974 1.01894 0.94432 1.22848 0.93751 1.01587 1.01067 1.67604 1.05645 1.27452 1.22997 1.23035 0.89873 0.93666 0.91341 0.93025 0.91359 0.90698 0.88307 0.91734 0.92073 0.85114 0.85021 0.94224 0.95696 0.92641 0.89832 0.90610 0.91880 0.91889 0.91902 0.92288 0.91131 0.92544 0.86154 0.82243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 10.44 59.85 0.62 1.52 16 2 N -0.62 -7.74 3.27 -190.76 -0.62 -8.36 16 3 C 0.06 0.56 9.00 59.84 0.54 1.10 16 4 C 0.58 9.10 7.40 -12.47 -0.09 9.01 16 5 O -0.55 -10.23 16.45 5.28 0.09 -10.14 16 6 C -0.29 -4.59 5.40 -104.82 -0.57 -5.16 16 7 C 0.02 0.33 9.68 -39.29 -0.38 -0.05 16 8 C -0.26 -4.22 9.18 -39.65 -0.36 -4.58 16 9 C 0.44 8.35 7.30 -155.27 -1.13 7.21 16 10 N -0.57 -10.92 2.52 -166.38 -0.42 -11.34 16 11 C 0.22 4.99 3.56 -5.19 -0.02 4.97 16 12 C -0.51 -13.52 8.09 -34.44 -0.28 -13.80 16 13 H 0.08 2.28 7.14 -52.48 -0.37 1.91 16 14 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 15 N -0.90 -26.32 13.96 55.43 0.77 -25.54 16 16 Si 0.87 20.39 27.47 -169.99 -4.67 15.72 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 20 C 0.15 2.36 3.15 -66.81 -0.21 2.15 16 21 C -0.14 -1.89 6.34 -25.08 -0.16 -2.05 16 22 C -0.12 -1.53 6.91 -24.74 -0.17 -1.70 16 23 C -0.12 -1.75 6.83 -25.07 -0.17 -1.92 16 24 C -0.15 -2.62 6.26 -25.61 -0.16 -2.78 16 25 N -0.52 -10.36 9.24 -12.14 -0.11 -10.48 16 26 C 0.18 3.04 8.53 -17.13 -0.15 2.89 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 29 H 0.07 0.83 7.51 -51.93 -0.39 0.44 16 30 H 0.10 1.12 4.05 -51.93 -0.21 0.91 16 31 H 0.06 0.54 8.03 -51.93 -0.42 0.12 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.13 1.83 8.01 -52.48 -0.42 1.41 16 34 H 0.13 1.80 5.94 -52.49 -0.31 1.49 16 35 H 0.04 0.94 6.62 -51.93 -0.34 0.60 16 36 H 0.03 0.55 6.07 -51.93 -0.31 0.23 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.08 1.19 5.51 -51.93 -0.29 0.91 16 39 H 0.08 1.17 6.50 -51.93 -0.34 0.83 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.12 2.58 4.58 -51.93 -0.24 2.34 16 47 H 0.16 2.24 5.64 -52.49 -0.30 1.94 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -31.91 364.32 -9.17 -41.08 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.91 Total: 4.83 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -2.79 Total: -1.27 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.38 Total: -55.72 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.91 -9.17 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.468 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds