Wall clock time and date at job start Tue Mar 31 2020 11:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00144 * 2 1 4 4 C 1.34773 * 119.99678 * 180.02562 * 2 1 3 5 5 O 1.21592 * 120.00471 * 354.18814 * 4 2 1 6 6 C 1.47543 * 119.99781 * 174.19322 * 4 2 1 7 7 C 1.40353 * 120.47472 * 148.15399 * 6 4 2 8 8 C 1.36854 * 118.49172 * 179.76652 * 7 6 4 9 9 C 1.39399 * 119.37717 * 0.49953 * 8 7 6 10 10 N 1.38461 * 119.53746 * 179.76872 * 9 8 7 11 11 C 1.46500 * 119.99979 * 191.44252 * 10 9 8 12 12 C 1.50700 * 109.47415 * 269.99978 * 11 10 9 13 13 H 1.08003 * 119.99644 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00036 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99654 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00144 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47057 * 89.99724 * 16 14 12 18 18 H 1.48494 * 109.47084 * 209.99950 * 16 14 12 19 19 H 1.48500 * 109.46839 * 330.00186 * 16 14 12 20 20 C 1.46503 * 119.99916 * 11.44376 * 10 9 8 21 21 C 1.54265 * 110.03050 * 242.50260 * 20 10 9 22 22 C 1.54883 * 104.19744 * 217.10703 * 21 20 10 23 23 C 1.54891 * 102.75096 * 37.94350 * 22 21 20 24 24 C 1.53876 * 110.02907 * 125.34039 * 20 10 9 25 25 N 1.32602 * 120.92206 * 359.48641 * 9 8 7 26 26 C 1.31680 * 121.63738 * 0.25525 * 25 9 8 27 27 H 1.08993 * 109.47309 * 270.00178 * 1 2 3 28 28 H 1.09001 * 109.46842 * 30.00180 * 1 2 3 29 29 H 1.09002 * 109.47149 * 149.99760 * 1 2 3 30 30 H 1.08998 * 109.47386 * 174.71582 * 3 2 1 31 31 H 1.09006 * 109.47301 * 294.71689 * 3 2 1 32 32 H 1.09005 * 109.47106 * 54.71654 * 3 2 1 33 33 H 1.08003 * 120.75583 * 0.03819 * 7 6 4 34 34 H 1.07996 * 120.31126 * 180.26055 * 8 7 6 35 35 H 1.09000 * 109.46815 * 30.00236 * 11 10 9 36 36 H 1.09003 * 109.47116 * 149.99834 * 11 10 9 37 37 H 0.97001 * 119.99877 * 180.02562 * 15 14 12 38 38 H 1.08991 * 110.05644 * 3.92334 * 20 10 9 39 39 H 1.09002 * 110.48718 * 335.79062 * 21 20 10 40 40 H 1.09000 * 110.48332 * 98.42998 * 21 20 10 41 41 H 1.09001 * 110.75886 * 279.62859 * 22 21 20 42 42 H 1.09002 * 110.91578 * 156.33551 * 22 21 20 43 43 H 1.08993 * 110.48882 * 203.38063 * 23 22 21 44 44 H 1.09003 * 110.47900 * 80.73594 * 23 22 21 45 45 H 1.08999 * 110.03045 * 238.56438 * 24 20 10 46 46 H 1.08998 * 110.03903 * 359.94995 * 24 20 10 47 47 H 1.08000 * 119.74027 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1672 -0.0005 5 8 1.5356 -2.2176 0.1056 6 6 3.6086 -1.1705 -0.1298 7 6 4.3758 -2.1663 0.4943 8 6 5.7357 -2.1332 0.3436 9 6 6.3155 -1.1140 -0.4103 10 7 7.6913 -1.0746 -0.5609 11 6 8.3321 0.1135 -1.1302 12 6 8.4252 -0.0344 -2.6270 13 1 8.0447 -0.9242 -3.1064 14 6 8.9952 0.9668 -3.3845 15 7 9.0760 0.8379 -4.6908 16 14 9.6514 2.5068 -2.5556 17 1 11.0785 2.3063 -2.1972 18 1 9.5315 3.6586 -3.4851 19 1 8.8657 2.7797 -1.3253 20 6 8.5062 -2.2210 -0.1511 21 6 9.4676 -1.8076 0.9823 22 6 10.7679 -2.5942 0.6833 23 6 10.8501 -2.5439 -0.8626 24 6 9.3852 -2.6890 -1.3242 25 7 5.5675 -0.1850 -0.9897 26 6 4.2557 -0.1832 -0.8741 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5139 30 1 3.2654 1.0717 0.0946 31 1 2.0071 1.7982 -0.9336 32 1 1.8651 1.8801 0.8389 33 1 3.9035 -2.9436 1.0767 34 1 6.3540 -2.8873 0.8076 35 1 7.7404 0.9965 -0.8884 36 1 9.3332 0.2216 -0.7128 37 1 9.4773 1.5420 -5.2238 38 1 7.8640 -3.0359 0.1826 39 1 9.6552 -0.7343 0.9510 40 1 9.0612 -2.0967 1.9516 41 1 10.6857 -3.6235 1.0324 42 1 11.6315 -2.1035 1.1323 43 1 11.4525 -3.3701 -1.2397 44 1 11.2610 -1.5894 -1.1918 45 1 9.1695 -3.7312 -1.5597 46 1 9.2049 -2.0638 -2.1987 47 1 3.6762 0.5882 -1.3594 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166535227.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:57 Heat of formation + Delta-G solvation = 13.344076 kcal Electronic energy + Delta-G solvation = -27258.584336 eV Core-core repulsion = 23634.536009 eV Total energy + Delta-G solvation = -3624.048326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.81243 -40.52586 -39.22935 -36.67636 -36.10937 -34.61052 -33.44682 -32.02485 -30.24772 -29.47037 -28.82827 -28.07300 -26.91124 -24.96452 -24.28183 -22.82564 -21.47575 -20.97564 -20.41386 -19.03929 -18.67414 -18.34708 -17.67234 -17.04465 -16.71376 -16.35783 -16.18545 -15.86466 -15.53437 -15.21646 -14.97205 -14.85897 -14.41772 -14.16632 -14.09900 -13.95760 -13.62034 -13.44583 -13.36516 -13.23258 -13.09465 -12.88336 -12.58693 -12.50089 -12.31696 -11.96799 -11.91070 -11.86254 -11.64686 -11.37925 -11.26863 -11.11300 -10.91206 -10.69661 -10.54033 -10.15480 -9.70699 -8.36299 -8.22302 -6.22658 0.00616 0.46531 1.35098 1.38298 1.47681 1.80592 2.07226 2.15096 2.36895 2.97084 3.11205 3.50074 3.65478 3.76111 3.82218 3.90969 4.04718 4.06737 4.25369 4.28829 4.42403 4.49665 4.52474 4.60977 4.64781 4.68491 4.75303 4.75475 4.83006 4.87900 4.91551 4.91963 4.96910 4.99056 5.10049 5.15469 5.20222 5.26645 5.34957 5.49249 5.51987 5.56990 5.60567 5.68004 6.05204 6.29153 6.37946 6.60991 6.76197 7.10517 7.30319 7.38797 8.93844 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.004289 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.121420 B = 6527.339341 C = 8051.251474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.618 5.618 3 C 0.053 3.947 4 C 0.572 3.428 5 O -0.585 6.585 6 C -0.284 4.284 7 C 0.019 3.981 8 C -0.252 4.252 9 C 0.415 3.585 10 N -0.577 5.577 11 C 0.241 3.759 12 C -0.499 4.499 13 H 0.029 0.971 14 C 0.013 3.987 15 N -0.949 5.949 16 Si 0.935 3.065 17 H -0.264 1.264 18 H -0.287 1.287 19 H -0.250 1.250 20 C 0.143 3.857 21 C -0.132 4.132 22 C -0.110 4.110 23 C -0.118 4.118 24 C -0.157 4.157 25 N -0.564 5.564 26 C 0.182 3.818 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.027 0.973 36 H 0.034 0.966 37 H 0.263 0.737 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.043 0.957 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.932 -1.721 15.236 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.350 5.350 3 C -0.089 4.089 4 C 0.362 3.638 5 O -0.467 6.467 6 C -0.293 4.293 7 C -0.006 4.006 8 C -0.277 4.277 9 C 0.179 3.821 10 N -0.282 5.282 11 C 0.119 3.881 12 C -0.537 4.537 13 H 0.048 0.952 14 C -0.184 4.184 15 N -0.590 5.590 16 Si 0.760 3.240 17 H -0.189 1.189 18 H -0.213 1.213 19 H -0.174 1.174 20 C 0.040 3.960 21 C -0.170 4.170 22 C -0.147 4.147 23 C -0.156 4.156 24 C -0.195 4.195 25 N -0.281 5.281 26 C 0.020 3.980 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.167 0.833 34 H 0.176 0.824 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.123 0.877 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.523 -1.503 14.643 16.100 hybrid contribution -0.120 0.233 -0.332 0.423 sum -6.643 -1.270 14.310 15.828 Atomic orbital electron populations 1.21760 0.77608 1.03713 1.02595 1.47711 1.08043 1.06288 1.72913 1.22588 0.98064 0.84197 1.04016 1.18183 0.86893 0.83442 0.75278 1.90706 1.70611 1.32663 1.52708 1.20432 0.93610 1.03122 1.12112 1.21127 0.92385 0.94360 0.92778 1.21282 0.95874 1.02981 1.07571 1.18978 0.85809 0.89642 0.87710 1.46916 1.01568 1.17588 1.62165 1.19209 0.92721 0.84218 0.91997 1.21375 1.37316 1.03398 0.91648 0.95232 1.25681 0.96308 1.01318 0.95064 1.70057 1.47034 1.35361 1.06546 0.85891 0.79594 0.79310 0.79251 1.18882 1.21289 1.17382 1.22032 0.92325 0.87169 0.94502 1.22779 0.95741 1.00537 0.97961 1.22428 0.96826 1.01101 0.94376 1.22249 0.95426 1.01048 0.96864 1.22773 0.95856 1.01174 0.99724 1.67542 1.07220 1.28924 1.24407 1.23309 0.89010 0.94288 0.91347 0.91918 0.88192 0.92217 0.89897 0.89753 0.89602 0.83294 0.82375 0.95453 0.94798 0.92775 0.87660 0.92430 0.89122 0.89295 0.90467 0.90788 0.93818 0.91345 0.91373 0.80416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.49 10.44 127.77 1.33 2.83 16 2 N -0.62 -14.10 3.27 -875.71 -2.87 -16.97 16 3 C 0.05 0.91 9.00 127.77 1.15 2.06 16 4 C 0.57 17.41 7.40 86.70 0.64 18.05 16 5 O -0.59 -21.38 16.45 -4.01 -0.07 -21.45 16 6 C -0.28 -8.83 5.40 -19.99 -0.11 -8.94 16 7 C 0.02 0.57 9.68 22.46 0.22 0.78 16 8 C -0.25 -7.67 9.18 22.22 0.20 -7.47 16 9 C 0.42 15.74 7.30 133.25 0.97 16.71 16 10 N -0.58 -22.37 2.52 -680.30 -1.72 -24.09 16 11 C 0.24 10.97 3.56 85.63 0.30 11.27 16 12 C -0.50 -27.51 8.09 25.60 0.21 -27.30 16 13 H 0.03 1.88 7.14 -2.91 -0.02 1.86 16 14 C 0.01 0.76 5.47 84.66 0.46 1.22 16 15 N -0.95 -58.51 13.96 21.45 0.30 -58.21 16 16 Si 0.94 42.88 27.47 68.60 1.88 44.76 16 17 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 20 C 0.14 4.40 3.15 45.72 0.14 4.55 16 21 C -0.13 -3.31 6.34 31.67 0.20 -3.11 16 22 C -0.11 -2.40 6.91 31.88 0.22 -2.18 16 23 C -0.12 -3.42 6.83 31.67 0.22 -3.20 16 24 C -0.16 -5.38 6.26 31.32 0.20 -5.18 16 25 N -0.56 -22.72 9.24 -192.32 -1.78 -24.50 16 26 C 0.18 5.96 8.53 85.03 0.73 6.69 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 1.13 8.07 -2.39 -0.02 1.11 16 29 H 0.06 1.26 7.51 -2.39 -0.02 1.24 16 30 H 0.08 1.75 4.05 -2.39 -0.01 1.74 16 31 H 0.08 1.16 8.03 -2.38 -0.02 1.14 16 32 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.15 3.86 8.01 -2.91 -0.02 3.83 16 34 H 0.16 3.84 5.94 -2.91 -0.02 3.83 16 35 H 0.03 1.32 6.62 -2.39 -0.02 1.30 16 36 H 0.03 1.49 6.07 -2.39 -0.01 1.47 16 37 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.11 2.74 5.51 -2.39 -0.01 2.73 16 39 H 0.06 1.67 6.50 -2.39 -0.02 1.65 16 40 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.07 3.11 4.58 -2.39 -0.01 3.10 16 47 H 0.18 4.89 5.64 -2.91 -0.02 4.87 16 Total: -1.00 -74.14 364.32 3.77 -70.37 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.92 Total: 23.30 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 7.09 Total: 6.78 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -6.06 Total: -123.76 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.07 Total: -21.45 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.88 Total: 44.76 kcal Total: -74.14 3.77 -70.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535227.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.712 kcal (2) G-P(sol) polarization free energy of solvation -74.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds