Wall clock time and date at job start Tue Mar 31 2020 11:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46848 * 110.99634 * 2 1 4 4 C 1.53032 * 109.52137 * 185.84101 * 3 2 1 5 5 C 1.53130 * 109.27674 * 300.81576 * 4 3 2 6 6 C 1.53117 * 109.14802 * 57.66122 * 5 4 3 7 7 C 1.46844 * 111.00009 * 124.20371 * 2 1 3 8 8 H 1.09002 * 109.46197 * 294.17115 * 7 2 1 9 9 C 1.50705 * 109.46150 * 54.14854 * 7 2 1 10 10 O 1.21275 * 120.00119 * 20.01955 * 9 7 2 11 11 N 1.34776 * 120.00131 * 200.01913 * 9 7 2 12 12 C 1.46506 * 119.99787 * 0.02562 * 11 9 7 13 13 C 1.50698 * 109.46996 * 269.99699 * 12 11 9 14 14 H 1.08000 * 119.99988 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99969 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99820 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00141 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46929 * 89.99766 * 17 15 13 19 19 H 1.48490 * 109.47080 * 209.99902 * 17 15 13 20 20 H 1.48499 * 109.46737 * 330.00368 * 17 15 13 21 21 C 1.46497 * 120.00197 * 179.97438 * 11 9 7 22 22 C 1.50699 * 109.47123 * 270.00097 * 21 11 9 23 23 C 1.38675 * 120.41772 * 89.99701 * 22 21 11 24 24 C 1.38630 * 118.41860 * 179.74920 * 23 22 21 25 25 C 1.38224 * 119.16347 * 0.25530 * 24 23 22 26 26 N 1.31856 * 120.76155 * 359.97390 * 25 24 23 27 27 C 1.31888 * 121.72786 * 0.02789 * 26 25 24 28 28 H 1.09006 * 109.47609 * 295.79143 * 1 2 3 29 29 H 1.08999 * 109.47101 * 55.79604 * 1 2 3 30 30 H 1.09001 * 109.47270 * 175.79204 * 1 2 3 31 31 H 1.09004 * 109.46103 * 305.85294 * 3 2 1 32 32 H 1.08992 * 109.46543 * 65.82104 * 3 2 1 33 33 H 1.09000 * 109.50545 * 60.75558 * 4 3 2 34 34 H 1.09000 * 109.50500 * 180.88026 * 4 3 2 35 35 H 1.08996 * 109.51769 * 177.56086 * 5 4 3 36 36 H 1.09003 * 109.52069 * 297.68688 * 5 4 3 37 37 H 1.09005 * 109.49121 * 182.39313 * 6 5 4 38 38 H 1.08996 * 109.51171 * 62.28090 * 6 5 4 39 39 H 1.08999 * 109.46912 * 29.99976 * 12 11 9 40 40 H 1.08999 * 109.47098 * 149.99838 * 12 11 9 41 41 H 0.97004 * 119.99600 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.46985 * 150.00358 * 21 11 9 43 43 H 1.08994 * 109.47003 * 29.99905 * 21 11 9 44 44 H 1.08002 * 120.79244 * 0.03059 * 23 22 21 45 45 H 1.07997 * 120.41760 * 180.23193 * 24 23 22 46 46 H 1.07997 * 119.61788 * 180.02562 * 25 24 23 47 47 H 1.07999 * 119.61439 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3343 -0.1468 5 6 4.1187 0.5371 1.0145 6 6 3.5180 -0.8713 1.0207 7 6 1.9952 -0.7706 1.1338 8 1 1.7325 -0.2705 2.0660 9 6 1.3982 -2.1543 1.1207 10 8 0.9169 -2.5974 0.0996 11 7 1.3993 -2.8994 2.2438 12 6 1.9803 -2.3639 3.4775 13 6 3.4428 -2.7214 3.5404 14 1 3.8945 -3.2903 2.7412 15 6 4.2043 -2.3224 4.6183 16 7 3.6541 -1.6301 5.5918 17 14 6.0175 -2.7650 4.6960 18 1 6.8169 -1.6926 4.0508 19 1 6.4322 -2.9060 6.1149 20 1 6.2447 -4.0482 3.9839 21 6 0.8184 -4.2442 2.2313 22 6 -0.6436 -4.1633 2.5877 23 6 -1.5995 -3.9961 1.5971 24 6 -2.9329 -3.9322 1.9710 25 6 -3.2626 -4.0313 3.3097 26 7 -2.3262 -4.1852 4.2252 27 6 -1.0482 -4.2500 3.9061 28 1 -0.3634 0.4471 0.9253 29 1 -0.3633 0.5777 -0.8499 30 1 -0.3634 -1.0249 -0.0754 31 1 1.5633 1.9257 -0.8330 32 1 1.7324 1.8609 0.9375 33 1 3.7813 0.8568 -1.0906 34 1 3.9098 2.3513 -0.1311 35 1 5.1996 0.4716 0.8905 36 1 3.8895 1.0363 1.9560 37 1 3.9100 -1.4301 1.8706 38 1 3.7812 -1.3834 0.0952 39 1 1.8704 -1.2795 3.4900 40 1 1.4644 -2.7912 4.3374 41 1 4.1900 -1.3491 6.3500 42 1 1.3356 -4.8701 2.9585 43 1 0.9265 -4.6774 1.2369 44 1 -1.3125 -3.9219 0.5585 45 1 -3.7044 -3.8063 1.2258 46 1 -4.2991 -3.9829 3.6092 47 1 -0.3097 -4.3770 4.6838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178691713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:40 Heat of formation + Delta-G solvation = 4.175181 kcal Electronic energy + Delta-G solvation = -28187.418728 eV Core-core repulsion = 24562.972808 eV Total energy + Delta-G solvation = -3624.445920 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.23159 -39.57698 -37.52297 -35.31129 -33.22105 -32.98696 -32.17744 -31.49666 -30.42093 -27.58807 -26.74654 -25.86718 -23.49155 -23.36515 -22.88321 -22.41574 -21.59819 -19.57130 -18.33036 -16.96922 -16.68606 -16.44943 -15.93662 -15.79742 -15.19264 -14.92017 -14.54950 -14.42161 -14.22843 -13.96939 -13.53886 -13.45654 -13.18492 -12.79428 -12.75594 -12.53235 -12.47250 -12.17727 -11.95395 -11.71458 -11.46500 -11.34452 -11.19746 -11.05759 -10.93674 -10.75623 -10.51045 -10.25428 -10.19781 -9.97440 -9.72852 -9.59053 -9.24694 -9.03052 -8.70599 -8.59224 -7.90262 -7.82408 -6.26573 -4.32862 1.29058 1.51317 3.17647 3.25947 3.27067 3.33539 3.66707 4.10576 4.25026 4.44569 4.65911 5.01003 5.04351 5.14178 5.15097 5.18023 5.24629 5.27731 5.31555 5.49758 5.58850 5.65978 5.67177 5.75234 5.85654 5.87973 5.90833 6.01753 6.05964 6.15121 6.16920 6.27834 6.31579 6.34666 6.37397 6.51014 6.57724 6.65213 6.79319 6.92578 7.02804 7.09980 7.32231 7.42011 7.50191 7.67272 7.95793 8.17608 8.23347 8.70789 8.96379 9.32912 10.79623 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009485 B = 0.006259 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.237048 B = 4472.623094 C = 6724.723857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.523 5.523 3 C 0.059 3.941 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.123 4.123 7 C 0.081 3.919 8 H 0.063 0.937 9 C 0.525 3.475 10 O -0.556 6.556 11 N -0.591 5.591 12 C 0.236 3.764 13 C -0.537 4.537 14 H 0.066 0.934 15 C 0.069 3.931 16 N -0.885 5.885 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.161 3.839 22 C -0.145 4.145 23 C -0.056 4.056 24 C -0.182 4.182 25 C 0.089 3.911 26 N -0.490 5.490 27 C 0.114 3.886 28 H 0.014 0.986 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.121 0.879 38 H 0.061 0.939 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.266 0.734 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.138 0.862 45 H 0.129 0.871 46 H 0.149 0.851 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.341 1.382 -7.051 9.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.248 5.248 3 C -0.069 4.069 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.030 4.030 8 H 0.081 0.919 9 C 0.313 3.687 10 O -0.435 6.435 11 N -0.322 5.322 12 C 0.117 3.883 13 C -0.575 4.575 14 H 0.084 0.916 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.196 1.196 21 C 0.037 3.963 22 C -0.148 4.148 23 C -0.083 4.083 24 C -0.201 4.201 25 C -0.068 4.068 26 N -0.198 5.198 27 C -0.043 4.043 28 H 0.032 0.968 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.155 0.845 45 H 0.147 0.853 46 H 0.167 0.833 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.625 0.949 -6.919 9.626 hybrid contribution 0.911 0.457 0.142 1.029 sum -5.714 1.406 -6.777 8.975 Atomic orbital electron populations 1.22526 0.87576 1.03791 0.99136 1.61680 1.07494 1.12553 1.43084 1.22074 0.95846 0.89083 0.99939 1.21624 0.94376 0.99725 0.99763 1.21530 0.99693 0.96142 0.98032 1.21923 0.91327 0.97774 1.05041 1.21511 0.97051 0.91899 0.92514 0.91924 1.20294 0.78382 0.87189 0.82817 1.90532 1.47745 1.73071 1.32172 1.48263 1.56889 1.14695 1.12325 1.19501 0.93415 0.95032 0.80394 1.21404 0.93989 1.36057 1.06093 0.91632 1.24926 0.98741 0.94656 0.95181 1.69922 1.36538 1.36503 1.09314 0.86584 0.84831 0.79213 0.77495 1.20270 1.21061 1.19645 1.20123 0.87362 0.85795 1.03044 1.21455 0.97908 1.00795 0.94619 1.21668 0.92311 0.93874 1.00446 1.22103 0.97082 1.03229 0.97728 1.22690 0.98844 0.95948 0.89344 1.67703 1.01668 1.12370 1.38061 1.22809 0.92501 0.94085 0.94882 0.96752 0.92066 0.89447 0.91130 0.95223 0.91357 0.92092 0.91917 0.92018 0.86136 0.92068 0.94516 0.94594 0.92397 0.89049 0.89784 0.84455 0.85287 0.83329 0.82534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.09 60.06 0.55 0.83 16 2 N -0.52 -9.00 4.51 -236.33 -1.07 -10.07 16 3 C 0.06 0.85 5.46 -3.84 -0.02 0.83 16 4 C -0.12 -1.62 6.09 -26.65 -0.16 -1.78 16 5 C -0.12 -1.86 6.00 -26.60 -0.16 -2.02 16 6 C -0.12 -2.29 5.28 -26.65 -0.14 -2.43 16 7 C 0.08 1.54 1.51 -68.88 -0.10 1.43 16 8 H 0.06 1.28 6.31 -51.93 -0.33 0.95 16 9 C 0.53 10.53 6.11 -10.98 -0.07 10.47 16 10 O -0.56 -11.69 13.74 5.56 0.08 -11.61 16 11 N -0.59 -11.68 2.44 -176.43 -0.43 -12.11 16 12 C 0.24 5.25 4.88 -5.19 -0.03 5.22 16 13 C -0.54 -12.76 6.64 -34.44 -0.23 -12.99 16 14 H 0.07 1.58 7.55 -52.49 -0.40 1.19 16 15 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -23.10 13.29 55.43 0.74 -22.37 16 17 Si 0.89 19.43 29.54 -169.99 -5.02 14.41 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 21 C 0.16 2.79 5.56 -5.20 -0.03 2.76 16 22 C -0.14 -2.35 5.48 -104.48 -0.57 -2.92 16 23 C -0.06 -0.85 9.86 -39.27 -0.39 -1.24 16 24 C -0.18 -2.37 10.11 -39.44 -0.40 -2.77 16 25 C 0.09 1.21 11.18 -17.55 -0.20 1.02 16 26 N -0.49 -7.97 10.36 -13.25 -0.14 -8.11 16 27 C 0.11 1.89 10.86 -17.55 -0.19 1.70 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 30 H 0.09 1.57 5.62 -51.93 -0.29 1.27 16 31 H 0.07 0.90 8.09 -51.93 -0.42 0.48 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.12 2.53 4.55 -51.93 -0.24 2.29 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.04 0.88 5.94 -51.93 -0.31 0.57 16 40 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 41 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 42 H 0.09 1.53 8.03 -51.93 -0.42 1.11 16 43 H 0.08 1.44 7.37 -51.93 -0.38 1.06 16 44 H 0.14 2.08 7.69 -52.49 -0.40 1.68 16 45 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 46 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 47 H 0.16 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -27.25 371.59 -9.86 -37.11 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -7.39 Total: 7.44 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.23 Total: -0.29 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.90 Total: -52.65 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -27.25 -9.86 -37.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178691713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.284 kcal (2) G-P(sol) polarization free energy of solvation -27.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds