Wall clock time and date at job start Tue Mar 31 2020 11:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46848 * 110.99634 * 2 1 4 4 C 1.53032 * 109.52137 * 185.84101 * 3 2 1 5 5 C 1.53130 * 109.27674 * 300.81576 * 4 3 2 6 6 C 1.53117 * 109.14802 * 57.66122 * 5 4 3 7 7 C 1.46844 * 111.00009 * 124.20371 * 2 1 3 8 8 H 1.09002 * 109.46197 * 294.17115 * 7 2 1 9 9 C 1.50705 * 109.46150 * 54.14854 * 7 2 1 10 10 O 1.21275 * 120.00119 * 20.01955 * 9 7 2 11 11 N 1.34776 * 120.00131 * 200.01913 * 9 7 2 12 12 C 1.46506 * 119.99787 * 0.02562 * 11 9 7 13 13 C 1.50698 * 109.46996 * 269.99699 * 12 11 9 14 14 H 1.08000 * 119.99988 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99969 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99820 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00141 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46929 * 89.99766 * 17 15 13 19 19 H 1.48490 * 109.47080 * 209.99902 * 17 15 13 20 20 H 1.48499 * 109.46737 * 330.00368 * 17 15 13 21 21 C 1.46497 * 120.00197 * 179.97438 * 11 9 7 22 22 C 1.50699 * 109.47123 * 270.00097 * 21 11 9 23 23 C 1.38675 * 120.41772 * 89.99701 * 22 21 11 24 24 C 1.38630 * 118.41860 * 179.74920 * 23 22 21 25 25 C 1.38224 * 119.16347 * 0.25530 * 24 23 22 26 26 N 1.31856 * 120.76155 * 359.97390 * 25 24 23 27 27 C 1.31888 * 121.72786 * 0.02789 * 26 25 24 28 28 H 1.09006 * 109.47609 * 295.79143 * 1 2 3 29 29 H 1.08999 * 109.47101 * 55.79604 * 1 2 3 30 30 H 1.09001 * 109.47270 * 175.79204 * 1 2 3 31 31 H 1.09004 * 109.46103 * 305.85294 * 3 2 1 32 32 H 1.08992 * 109.46543 * 65.82104 * 3 2 1 33 33 H 1.09000 * 109.50545 * 60.75558 * 4 3 2 34 34 H 1.09000 * 109.50500 * 180.88026 * 4 3 2 35 35 H 1.08996 * 109.51769 * 177.56086 * 5 4 3 36 36 H 1.09003 * 109.52069 * 297.68688 * 5 4 3 37 37 H 1.09005 * 109.49121 * 182.39313 * 6 5 4 38 38 H 1.08996 * 109.51171 * 62.28090 * 6 5 4 39 39 H 1.08999 * 109.46912 * 29.99976 * 12 11 9 40 40 H 1.08999 * 109.47098 * 149.99838 * 12 11 9 41 41 H 0.97004 * 119.99600 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.46985 * 150.00358 * 21 11 9 43 43 H 1.08994 * 109.47003 * 29.99905 * 21 11 9 44 44 H 1.08002 * 120.79244 * 0.03059 * 23 22 21 45 45 H 1.07997 * 120.41760 * 180.23193 * 24 23 22 46 46 H 1.07997 * 119.61788 * 180.02562 * 25 24 23 47 47 H 1.07999 * 119.61439 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5180 1.3343 -0.1468 5 6 4.1187 0.5371 1.0145 6 6 3.5180 -0.8713 1.0207 7 6 1.9952 -0.7706 1.1338 8 1 1.7325 -0.2705 2.0660 9 6 1.3982 -2.1543 1.1207 10 8 0.9169 -2.5974 0.0996 11 7 1.3993 -2.8994 2.2438 12 6 1.9803 -2.3639 3.4775 13 6 3.4428 -2.7214 3.5404 14 1 3.8945 -3.2903 2.7412 15 6 4.2043 -2.3224 4.6183 16 7 3.6541 -1.6301 5.5918 17 14 6.0175 -2.7650 4.6960 18 1 6.8169 -1.6926 4.0508 19 1 6.4322 -2.9060 6.1149 20 1 6.2447 -4.0482 3.9839 21 6 0.8184 -4.2442 2.2313 22 6 -0.6436 -4.1633 2.5877 23 6 -1.5995 -3.9961 1.5971 24 6 -2.9329 -3.9322 1.9710 25 6 -3.2626 -4.0313 3.3097 26 7 -2.3262 -4.1852 4.2252 27 6 -1.0482 -4.2500 3.9061 28 1 -0.3634 0.4471 0.9253 29 1 -0.3633 0.5777 -0.8499 30 1 -0.3634 -1.0249 -0.0754 31 1 1.5633 1.9257 -0.8330 32 1 1.7324 1.8609 0.9375 33 1 3.7813 0.8568 -1.0906 34 1 3.9098 2.3513 -0.1311 35 1 5.1996 0.4716 0.8905 36 1 3.8895 1.0363 1.9560 37 1 3.9100 -1.4301 1.8706 38 1 3.7812 -1.3834 0.0952 39 1 1.8704 -1.2795 3.4900 40 1 1.4644 -2.7912 4.3374 41 1 4.1900 -1.3491 6.3500 42 1 1.3356 -4.8701 2.9585 43 1 0.9265 -4.6774 1.2369 44 1 -1.3125 -3.9219 0.5585 45 1 -3.7044 -3.8063 1.2258 46 1 -4.2991 -3.9829 3.6092 47 1 -0.3097 -4.3770 4.6838 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178691713.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:39 Heat of formation + Delta-G solvation = -10.806107 kcal Electronic energy + Delta-G solvation = -28188.068365 eV Core-core repulsion = 24562.972808 eV Total energy + Delta-G solvation = -3625.095557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64793 -40.87371 -38.92628 -36.94835 -34.86268 -34.34365 -33.64880 -32.74554 -31.74252 -29.35391 -28.10602 -27.25271 -25.10410 -24.66740 -24.32175 -23.74769 -22.87511 -20.89208 -19.91524 -18.56874 -18.21433 -17.88020 -17.44448 -17.08907 -16.59048 -16.41797 -16.11715 -15.79248 -15.55313 -15.29260 -14.94229 -14.72717 -14.53258 -14.23351 -14.10386 -13.97147 -13.84955 -13.61566 -13.50412 -13.23333 -12.90408 -12.79102 -12.70038 -12.62512 -12.43783 -12.32505 -11.99833 -11.79585 -11.64971 -11.58495 -11.18089 -10.83524 -10.59515 -10.47186 -10.41994 -9.95382 -9.48494 -9.27023 -8.18511 -6.29831 0.11017 0.32152 1.42928 1.46327 1.54023 1.71980 2.19012 2.43508 2.88402 3.05978 3.12948 3.52749 3.63215 3.86771 3.91478 3.94530 4.02859 4.07811 4.09136 4.13864 4.23464 4.36465 4.45756 4.48456 4.56685 4.67173 4.68983 4.73466 4.79253 4.83369 4.86262 4.87909 5.00968 5.07800 5.12072 5.18153 5.20842 5.23655 5.36327 5.47444 5.49444 5.64277 5.76638 5.78979 5.99605 6.05909 6.17352 6.53852 6.81525 6.99906 7.31024 7.41790 8.87178 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009485 B = 0.006259 C = 0.004163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2951.237048 B = 4472.623094 C = 6724.723857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.531 5.531 3 C 0.055 3.945 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.119 4.119 7 C 0.087 3.913 8 H 0.042 0.958 9 C 0.522 3.478 10 O -0.565 6.565 11 N -0.593 5.593 12 C 0.256 3.744 13 C -0.532 4.532 14 H 0.060 0.940 15 C 0.029 3.971 16 N -0.917 5.917 17 Si 0.946 3.054 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.269 1.269 21 C 0.162 3.838 22 C -0.155 4.155 23 C -0.064 4.064 24 C -0.169 4.169 25 C 0.089 3.911 26 N -0.511 5.511 27 C 0.100 3.900 28 H 0.012 0.988 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.093 0.907 38 H 0.056 0.944 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.267 0.733 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.135 0.865 45 H 0.167 0.833 46 H 0.186 0.814 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.999 2.168 -8.605 11.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.257 5.257 3 C -0.073 4.073 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.157 4.157 7 C -0.025 4.025 8 H 0.060 0.940 9 C 0.310 3.690 10 O -0.446 6.446 11 N -0.323 5.323 12 C 0.135 3.865 13 C -0.570 4.570 14 H 0.078 0.922 15 C -0.172 4.172 16 N -0.556 5.556 17 Si 0.772 3.228 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.194 1.194 21 C 0.039 3.961 22 C -0.159 4.159 23 C -0.090 4.090 24 C -0.188 4.188 25 C -0.068 4.068 26 N -0.220 5.220 27 C -0.056 4.056 28 H 0.030 0.970 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.153 0.847 45 H 0.184 0.816 46 H 0.203 0.797 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.282 1.725 -8.486 11.315 hybrid contribution 1.001 0.198 0.579 1.173 sum -6.282 1.923 -7.907 10.280 Atomic orbital electron populations 1.22489 0.87008 1.02963 1.00168 1.61737 1.08156 1.14042 1.41729 1.22238 0.96471 0.87683 1.00868 1.21601 0.93712 1.00920 0.98500 1.21523 1.00425 0.94592 0.98701 1.21799 0.91252 0.99297 1.03368 1.21388 0.97248 0.91359 0.92471 0.94013 1.20536 0.78169 0.87676 0.82579 1.90515 1.48242 1.73499 1.32322 1.48228 1.56919 1.15607 1.11517 1.19086 0.92776 0.93765 0.80879 1.21501 0.94614 1.35263 1.05634 0.92198 1.25544 1.02110 0.94636 0.94925 1.70019 1.37828 1.37817 1.09932 0.85722 0.80782 0.79049 0.77254 1.19638 1.21144 1.19385 1.20168 0.88411 0.84523 1.03035 1.21284 0.97273 1.02291 0.95003 1.21760 0.93226 0.94081 0.99977 1.22466 0.96860 1.01056 0.98405 1.23341 0.99903 0.94263 0.89301 1.67712 1.01766 1.13196 1.39332 1.22711 0.92932 0.95203 0.94793 0.96992 0.89370 0.91470 0.88484 0.95542 0.91121 0.89186 0.90753 0.93149 0.88863 0.92539 0.96359 0.96168 0.92437 0.89127 0.89700 0.84688 0.81590 0.79717 0.83441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.09 127.69 1.16 1.83 16 2 N -0.53 -17.76 4.51 -901.61 -4.07 -21.82 16 3 C 0.05 1.48 5.46 86.32 0.47 1.95 16 4 C -0.11 -2.77 6.09 30.65 0.19 -2.59 16 5 C -0.11 -3.57 6.00 30.68 0.18 -3.38 16 6 C -0.12 -4.49 5.28 30.64 0.16 -4.32 16 7 C 0.09 3.33 1.51 44.19 0.07 3.40 16 8 H 0.04 1.78 6.31 -2.39 -0.02 1.77 16 9 C 0.52 21.39 6.11 87.66 0.54 21.92 16 10 O -0.57 -23.96 13.74 -3.01 -0.04 -24.00 16 11 N -0.59 -24.28 2.44 -830.51 -2.03 -26.31 16 12 C 0.26 11.88 4.88 85.63 0.42 12.30 16 13 C -0.53 -26.03 6.64 25.60 0.17 -25.86 16 14 H 0.06 2.97 7.55 -2.91 -0.02 2.94 16 15 C 0.03 1.45 5.46 84.65 0.46 1.91 16 16 N -0.92 -49.03 13.29 21.45 0.28 -48.75 16 17 Si 0.95 40.18 29.54 68.60 2.03 42.21 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 19 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 21 C 0.16 5.81 5.56 85.63 0.48 6.29 16 22 C -0.16 -5.15 5.48 -19.77 -0.11 -5.26 16 23 C -0.06 -1.88 9.86 22.47 0.22 -1.65 16 24 C -0.17 -3.99 10.11 22.36 0.23 -3.76 16 25 C 0.09 2.23 11.18 84.69 0.95 3.18 16 26 N -0.51 -16.41 10.36 -195.85 -2.03 -18.44 16 27 C 0.10 3.39 10.86 84.67 0.92 4.31 16 28 H 0.01 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.09 2.23 8.09 -2.39 -0.02 2.21 16 30 H 0.07 2.37 5.62 -2.39 -0.01 2.35 16 31 H 0.10 2.13 8.09 -2.39 -0.02 2.11 16 32 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 4.03 4.55 -2.38 -0.01 4.01 16 38 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.02 0.93 5.94 -2.39 -0.01 0.91 16 40 H 0.02 1.00 8.07 -2.39 -0.02 0.98 16 41 H 0.27 13.64 8.31 -92.71 -0.77 12.87 16 42 H 0.09 3.19 8.03 -2.39 -0.02 3.17 16 43 H 0.08 3.00 7.37 -2.39 -0.02 2.98 16 44 H 0.14 4.02 7.69 -2.91 -0.02 4.00 16 45 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 46 H 0.19 3.19 8.06 -2.91 -0.02 3.17 16 47 H 0.15 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -59.22 371.59 1.60 -57.62 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: 0.95 Total: 29.23 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.50 Total: 10.27 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -7.84 Total: -115.32 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.04 Total: -24.00 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -59.22 1.60 -57.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178691713.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.811 kcal (2) G-P(sol) polarization free energy of solvation -59.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds