Wall clock time and date at job start Tue Mar 31 2020 11:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46852 * 110.99967 * 2 1 4 4 C 1.53032 * 109.52158 * 174.15973 * 3 2 1 5 5 C 1.53114 * 109.28093 * 59.17798 * 4 3 2 6 6 C 1.53116 * 109.16031 * 302.34215 * 5 4 3 7 7 H 1.09004 * 109.50784 * 297.67332 * 6 5 4 8 8 C 1.50705 * 109.50282 * 177.59622 * 6 5 4 9 9 O 1.21277 * 120.00126 * 346.24032 * 8 6 5 10 10 N 1.34776 * 119.99625 * 166.24225 * 8 6 5 11 11 C 1.46503 * 120.00295 * 4.59588 * 10 8 6 12 12 C 1.50703 * 109.46812 * 264.07927 * 11 10 8 13 13 H 1.07997 * 119.99952 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99555 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99799 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00437 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.46942 * 89.99800 * 16 14 12 18 18 H 1.48498 * 109.47437 * 209.99972 * 16 14 12 19 19 H 1.48500 * 109.46863 * 329.99894 * 16 14 12 20 20 C 1.46503 * 119.99964 * 184.59175 * 10 8 6 21 21 C 1.50702 * 109.47307 * 270.00446 * 20 10 8 22 22 C 1.38673 * 120.41321 * 269.71789 * 21 20 10 23 23 C 1.38633 * 118.41852 * 179.78228 * 22 21 20 24 24 C 1.38231 * 119.15795 * 0.51539 * 23 22 21 25 25 N 1.31859 * 120.76559 * 359.72464 * 24 23 22 26 26 C 1.31888 * 121.72232 * 359.97438 * 25 24 23 27 27 C 1.46842 * 110.99842 * 235.74596 * 2 1 3 28 28 H 1.09004 * 109.46665 * 63.95896 * 1 2 3 29 29 H 1.08996 * 109.46990 * 183.95247 * 1 2 3 30 30 H 1.09000 * 109.47615 * 303.95741 * 1 2 3 31 31 H 1.08999 * 109.46066 * 54.14000 * 3 2 1 32 32 H 1.09002 * 109.46005 * 294.17557 * 3 2 1 33 33 H 1.09004 * 109.50084 * 299.23133 * 4 3 2 34 34 H 1.09000 * 109.53289 * 179.14215 * 4 3 2 35 35 H 1.09001 * 109.52268 * 182.44028 * 5 4 3 36 36 H 1.09004 * 109.57493 * 62.28071 * 5 4 3 37 37 H 1.08994 * 109.47026 * 24.08094 * 11 10 8 38 38 H 1.09005 * 109.47048 * 144.07973 * 11 10 8 39 39 H 0.96994 * 120.00013 * 180.02562 * 15 14 12 40 40 H 1.09003 * 109.47241 * 149.99705 * 20 10 8 41 41 H 1.08998 * 109.46936 * 30.00009 * 20 10 8 42 42 H 1.07993 * 120.79405 * 0.02562 * 22 21 20 43 43 H 1.07997 * 120.42296 * 180.26351 * 23 22 21 44 44 H 1.07993 * 119.61997 * 179.74943 * 24 23 22 45 45 H 1.08000 * 119.61499 * 179.97438 * 26 25 24 46 46 H 1.08998 * 109.43063 * 65.80304 * 27 2 1 47 47 H 1.09005 * 109.49674 * 305.83857 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5182 -0.8715 -1.0207 7 1 3.7820 -1.3839 -0.0954 8 6 4.0599 -1.6441 -2.1957 9 8 4.6428 -1.0633 -3.0866 10 7 3.8966 -2.9805 -2.2564 11 6 3.1064 -3.6692 -1.2329 12 6 4.0257 -4.2112 -0.1689 13 1 5.0919 -4.0576 -0.2470 14 6 3.5056 -4.9022 0.9049 15 7 4.3079 -5.3757 1.8332 16 14 1.6614 -5.1673 1.0404 17 1 1.2926 -6.4362 0.3629 18 1 1.2757 -5.2405 2.4725 19 1 0.9499 -4.0357 0.3934 20 6 4.5092 -3.7446 -3.3460 21 6 3.5479 -3.8278 -4.5036 22 6 2.6479 -4.8788 -4.5947 23 6 1.7793 -4.9120 -5.6746 24 6 1.8460 -3.9091 -6.6237 25 7 2.7184 -2.9273 -6.5072 26 6 3.5557 -2.8605 -5.4904 27 6 1.9952 -0.7716 -1.1331 28 1 -0.3633 0.4512 -0.9234 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3634 0.5740 0.8524 31 1 1.5633 1.9258 0.8329 32 1 1.7325 1.8608 -0.9376 33 1 3.7812 0.8569 1.0907 34 1 3.9104 2.3510 0.1315 35 1 5.1997 0.4714 -0.8903 36 1 3.8897 1.0350 -1.9564 37 1 2.4039 -2.9677 -0.7832 38 1 2.5561 -4.4913 -1.6908 39 1 3.9420 -5.8621 2.5884 40 1 4.7454 -4.7498 -2.9969 41 1 5.4241 -3.2477 -3.6686 42 1 2.6215 -5.6511 -3.8402 43 1 1.0623 -5.7133 -5.7754 44 1 1.1757 -3.9298 -7.4701 45 1 4.2567 -2.0412 -5.4291 46 1 1.7318 -0.2722 -2.0654 47 1 1.5639 -1.7727 -1.1232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186350958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:20 Heat of formation + Delta-G solvation = 5.678599 kcal Electronic energy + Delta-G solvation = -27955.812394 eV Core-core repulsion = 24331.431667 eV Total energy + Delta-G solvation = -3624.380726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.29660 -39.62232 -37.91898 -35.45211 -33.37690 -32.92922 -32.22819 -31.65291 -30.60642 -28.14298 -26.60607 -26.26597 -23.72018 -23.39272 -22.78024 -22.32393 -21.71360 -19.69922 -18.38037 -17.16470 -16.86133 -16.58178 -15.96922 -15.82393 -15.42232 -15.17450 -14.96559 -14.46064 -14.29109 -14.14540 -13.56916 -13.51747 -13.17584 -13.00806 -12.88579 -12.79655 -12.57009 -12.46552 -12.21325 -11.94781 -11.61459 -11.55198 -11.36479 -11.16525 -10.95112 -10.74266 -10.59863 -10.34475 -10.28418 -10.10876 -9.74794 -9.60154 -9.32785 -9.20687 -8.79254 -8.70037 -8.20411 -7.87514 -6.24124 -4.25723 1.23654 1.43790 3.15009 3.19147 3.23365 3.25344 3.64510 4.02196 4.19433 4.24609 4.60426 4.91417 4.96930 4.98620 5.06264 5.10387 5.13674 5.17306 5.24353 5.29026 5.36257 5.49719 5.50299 5.59855 5.62960 5.71674 5.82613 5.88969 5.92153 5.95394 5.98697 6.05994 6.12241 6.13671 6.24585 6.30909 6.39061 6.45708 6.51757 6.67378 6.68805 6.87552 7.14752 7.17985 7.25138 7.41191 8.02354 8.12172 8.36266 8.76850 8.84756 9.35176 10.88424 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008644 B = 0.006319 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.413062 B = 4429.675391 C = 6039.962230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.538 5.538 3 C 0.056 3.944 4 C -0.117 4.117 5 C -0.098 4.098 6 C -0.103 4.103 7 H 0.120 0.880 8 C 0.526 3.474 9 O -0.565 6.565 10 N -0.584 5.584 11 C 0.198 3.802 12 C -0.540 4.540 13 H 0.079 0.921 14 C 0.080 3.920 15 N -0.889 5.889 16 Si 0.869 3.131 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.263 1.263 20 C 0.160 3.840 21 C -0.145 4.145 22 C -0.063 4.063 23 C -0.179 4.179 24 C 0.088 3.912 25 N -0.492 5.492 26 C 0.118 3.882 27 C 0.064 3.936 28 H 0.022 0.978 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.024 0.976 39 H 0.267 0.733 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.136 0.864 43 H 0.131 0.869 44 H 0.150 0.850 45 H 0.160 0.840 46 H 0.031 0.969 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 6.389 -7.666 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.262 5.262 3 C -0.072 4.072 4 C -0.155 4.155 5 C -0.136 4.136 6 C -0.124 4.124 7 H 0.138 0.862 8 C 0.314 3.686 9 O -0.445 6.445 10 N -0.313 5.313 11 C 0.078 3.922 12 C -0.579 4.579 13 H 0.097 0.903 14 C -0.124 4.124 15 N -0.526 5.526 16 Si 0.696 3.304 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.187 1.187 20 C 0.036 3.964 21 C -0.148 4.148 22 C -0.089 4.089 23 C -0.199 4.199 24 C -0.069 4.069 25 N -0.200 5.200 26 C -0.039 4.039 27 C -0.063 4.063 28 H 0.040 0.960 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.167 0.833 45 H 0.177 0.823 46 H 0.049 0.951 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.362 6.995 -8.138 12.475 hybrid contribution -1.407 -0.810 0.276 1.646 sum -7.769 6.185 -7.862 12.666 Atomic orbital electron populations 1.22341 0.87369 1.02390 1.00077 1.61836 1.07350 1.13540 1.43510 1.22114 0.96018 0.89082 0.99999 1.21605 0.94108 0.99987 0.99811 1.21369 1.00221 0.93708 0.98343 1.21311 0.94997 0.96694 0.99437 0.86236 1.20447 0.79171 0.82166 0.86827 1.90572 1.44510 1.69252 1.40122 1.47943 1.51592 1.06140 1.25665 1.20106 0.92096 0.93188 0.86830 1.21317 0.95492 1.35784 1.05273 0.90284 1.24836 0.97585 0.94735 0.95259 1.69882 1.35009 1.36349 1.11379 0.86954 0.86244 0.79121 0.78094 1.20177 1.20794 1.18747 1.20165 0.93693 0.98282 0.84238 1.21462 0.99358 0.95873 0.98108 1.21641 0.92999 0.97406 0.96866 1.22100 1.00854 1.00844 0.96131 1.22706 0.95872 0.90239 0.98060 1.67725 1.04805 1.23948 1.23554 1.22881 0.95483 0.96929 0.88589 1.22183 0.94035 0.99028 0.91093 0.95985 0.91283 0.91358 0.90932 0.95207 0.90681 0.91496 0.91346 0.91700 0.93241 0.95807 0.92344 0.88801 0.89551 0.84603 0.85110 0.83308 0.82295 0.95087 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.59 60.06 0.58 0.91 16 2 N -0.54 -8.12 4.91 -242.96 -1.19 -9.32 16 3 C 0.06 0.72 5.47 -3.83 -0.02 0.70 16 4 C -0.12 -1.55 6.09 -26.66 -0.16 -1.71 16 5 C -0.10 -1.54 4.72 -26.61 -0.13 -1.66 16 6 C -0.10 -1.84 1.85 -91.69 -0.17 -2.01 16 7 H 0.12 2.41 7.49 -51.93 -0.39 2.02 16 8 C 0.53 10.25 6.92 -10.98 -0.08 10.17 16 9 O -0.56 -11.63 14.85 5.56 0.08 -11.55 16 10 N -0.58 -11.33 2.44 -176.43 -0.43 -11.76 16 11 C 0.20 4.18 3.80 -5.19 -0.02 4.16 16 12 C -0.54 -13.65 9.74 -34.44 -0.34 -13.99 16 13 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 14 C 0.08 2.09 5.47 -17.82 -0.10 2.00 16 15 N -0.89 -25.26 13.96 55.43 0.77 -24.49 16 16 Si 0.87 19.47 27.47 -169.99 -4.67 14.80 16 17 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 20 C 0.16 2.76 5.54 -5.19 -0.03 2.74 16 21 C -0.14 -2.31 5.48 -104.48 -0.57 -2.88 16 22 C -0.06 -0.90 9.86 -39.28 -0.39 -1.29 16 23 C -0.18 -2.25 10.11 -39.44 -0.40 -2.65 16 24 C 0.09 1.17 11.18 -17.54 -0.20 0.97 16 25 N -0.49 -7.83 10.36 -13.25 -0.14 -7.97 16 26 C 0.12 1.94 10.77 -17.55 -0.19 1.75 16 27 C 0.06 1.07 4.42 -3.84 -0.02 1.05 16 28 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 37 H 0.05 1.05 3.04 -51.93 -0.16 0.89 16 38 H 0.02 0.49 7.54 -51.93 -0.39 0.10 16 39 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.09 1.60 8.02 -51.93 -0.42 1.18 16 41 H 0.09 1.48 7.44 -51.93 -0.39 1.09 16 42 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.15 1.49 8.06 -52.49 -0.42 1.07 16 45 H 0.16 2.68 7.42 -52.49 -0.39 2.29 16 46 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.09 1.58 5.44 -51.93 -0.28 1.30 16 LS Contribution 373.75 15.07 5.63 5.63 Total: -1.00 -29.51 373.75 -9.64 -39.16 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.48 Total: 7.23 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -2.22 Total: -1.73 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: -0.99 Total: -53.53 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.67 Total: 14.80 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.51 -9.64 -39.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186350958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.835 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds