Wall clock time and date at job start Tue Mar 31 2020 11:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46852 * 110.99967 * 2 1 4 4 C 1.53032 * 109.52158 * 174.15973 * 3 2 1 5 5 C 1.53114 * 109.28093 * 59.17798 * 4 3 2 6 6 C 1.53116 * 109.16031 * 302.34215 * 5 4 3 7 7 H 1.09004 * 109.50784 * 297.67332 * 6 5 4 8 8 C 1.50705 * 109.50282 * 177.59622 * 6 5 4 9 9 O 1.21277 * 120.00126 * 346.24032 * 8 6 5 10 10 N 1.34776 * 119.99625 * 166.24225 * 8 6 5 11 11 C 1.46503 * 120.00295 * 4.59588 * 10 8 6 12 12 C 1.50703 * 109.46812 * 264.07927 * 11 10 8 13 13 H 1.07997 * 119.99952 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99555 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99799 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00437 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.46942 * 89.99800 * 16 14 12 18 18 H 1.48498 * 109.47437 * 209.99972 * 16 14 12 19 19 H 1.48500 * 109.46863 * 329.99894 * 16 14 12 20 20 C 1.46503 * 119.99964 * 184.59175 * 10 8 6 21 21 C 1.50702 * 109.47307 * 270.00446 * 20 10 8 22 22 C 1.38673 * 120.41321 * 269.71789 * 21 20 10 23 23 C 1.38633 * 118.41852 * 179.78228 * 22 21 20 24 24 C 1.38231 * 119.15795 * 0.51539 * 23 22 21 25 25 N 1.31859 * 120.76559 * 359.72464 * 24 23 22 26 26 C 1.31888 * 121.72232 * 359.97438 * 25 24 23 27 27 C 1.46842 * 110.99842 * 235.74596 * 2 1 3 28 28 H 1.09004 * 109.46665 * 63.95896 * 1 2 3 29 29 H 1.08996 * 109.46990 * 183.95247 * 1 2 3 30 30 H 1.09000 * 109.47615 * 303.95741 * 1 2 3 31 31 H 1.08999 * 109.46066 * 54.14000 * 3 2 1 32 32 H 1.09002 * 109.46005 * 294.17557 * 3 2 1 33 33 H 1.09004 * 109.50084 * 299.23133 * 4 3 2 34 34 H 1.09000 * 109.53289 * 179.14215 * 4 3 2 35 35 H 1.09001 * 109.52268 * 182.44028 * 5 4 3 36 36 H 1.09004 * 109.57493 * 62.28071 * 5 4 3 37 37 H 1.08994 * 109.47026 * 24.08094 * 11 10 8 38 38 H 1.09005 * 109.47048 * 144.07973 * 11 10 8 39 39 H 0.96994 * 120.00013 * 180.02562 * 15 14 12 40 40 H 1.09003 * 109.47241 * 149.99705 * 20 10 8 41 41 H 1.08998 * 109.46936 * 30.00009 * 20 10 8 42 42 H 1.07993 * 120.79405 * 0.02562 * 22 21 20 43 43 H 1.07997 * 120.42296 * 180.26351 * 23 22 21 44 44 H 1.07993 * 119.61997 * 179.74943 * 24 23 22 45 45 H 1.08000 * 119.61499 * 179.97438 * 26 25 24 46 46 H 1.08998 * 109.43063 * 65.80304 * 27 2 1 47 47 H 1.09005 * 109.49674 * 305.83857 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1188 0.5370 -1.0143 6 6 3.5182 -0.8715 -1.0207 7 1 3.7820 -1.3839 -0.0954 8 6 4.0599 -1.6441 -2.1957 9 8 4.6428 -1.0633 -3.0866 10 7 3.8966 -2.9805 -2.2564 11 6 3.1064 -3.6692 -1.2329 12 6 4.0257 -4.2112 -0.1689 13 1 5.0919 -4.0576 -0.2470 14 6 3.5056 -4.9022 0.9049 15 7 4.3079 -5.3757 1.8332 16 14 1.6614 -5.1673 1.0404 17 1 1.2926 -6.4362 0.3629 18 1 1.2757 -5.2405 2.4725 19 1 0.9499 -4.0357 0.3934 20 6 4.5092 -3.7446 -3.3460 21 6 3.5479 -3.8278 -4.5036 22 6 2.6479 -4.8788 -4.5947 23 6 1.7793 -4.9120 -5.6746 24 6 1.8460 -3.9091 -6.6237 25 7 2.7184 -2.9273 -6.5072 26 6 3.5557 -2.8605 -5.4904 27 6 1.9952 -0.7716 -1.1331 28 1 -0.3633 0.4512 -0.9234 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3634 0.5740 0.8524 31 1 1.5633 1.9258 0.8329 32 1 1.7325 1.8608 -0.9376 33 1 3.7812 0.8569 1.0907 34 1 3.9104 2.3510 0.1315 35 1 5.1997 0.4714 -0.8903 36 1 3.8897 1.0350 -1.9564 37 1 2.4039 -2.9677 -0.7832 38 1 2.5561 -4.4913 -1.6908 39 1 3.9420 -5.8621 2.5884 40 1 4.7454 -4.7498 -2.9969 41 1 5.4241 -3.2477 -3.6686 42 1 2.6215 -5.6511 -3.8402 43 1 1.0623 -5.7133 -5.7754 44 1 1.1757 -3.9298 -7.4701 45 1 4.2567 -2.0412 -5.4291 46 1 1.7318 -0.2722 -2.0654 47 1 1.5639 -1.7727 -1.1232 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186350958.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:19 Heat of formation + Delta-G solvation = -12.596995 kcal Electronic energy + Delta-G solvation = -27956.604883 eV Core-core repulsion = 24331.431667 eV Total energy + Delta-G solvation = -3625.173216 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65686 -40.85473 -39.20145 -37.04843 -34.86025 -34.40974 -33.68982 -32.81811 -31.84012 -29.92356 -27.69402 -27.62983 -25.16692 -24.56190 -24.07651 -23.82721 -22.91274 -20.93957 -19.89426 -19.08002 -18.12707 -17.95329 -17.41755 -17.05935 -16.75050 -16.46581 -16.18572 -16.05090 -15.62186 -15.36189 -14.84465 -14.74777 -14.64706 -14.35043 -14.21205 -14.09203 -13.99244 -13.82104 -13.50308 -13.21769 -13.04350 -12.99103 -12.60577 -12.55601 -12.40578 -12.33081 -12.00296 -11.77402 -11.66637 -11.61722 -11.37057 -10.91137 -10.76260 -10.61889 -10.45964 -9.96534 -9.49383 -9.32093 -8.28094 -6.34521 0.10968 0.31432 1.38338 1.42461 1.50397 1.63739 2.21841 2.35342 2.88621 2.99336 3.06019 3.51300 3.61702 3.72551 3.81895 3.87548 3.91988 4.06796 4.09118 4.12761 4.21877 4.29007 4.40577 4.47871 4.52191 4.53379 4.66051 4.66520 4.70765 4.73244 4.76570 4.86263 4.87513 4.94160 4.98902 5.00041 5.10333 5.18526 5.19915 5.34539 5.41419 5.46580 5.63047 5.77364 6.01255 6.14041 6.17021 6.57136 6.70535 6.99826 7.20745 7.32938 8.88096 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.008644 B = 0.006319 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3238.413062 B = 4429.675391 C = 6039.962230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.556 5.556 3 C 0.056 3.944 4 C -0.112 4.112 5 C -0.094 4.094 6 C -0.100 4.100 7 H 0.092 0.908 8 C 0.519 3.481 9 O -0.579 6.579 10 N -0.588 5.588 11 C 0.211 3.789 12 C -0.536 4.536 13 H 0.032 0.968 14 C 0.024 3.976 15 N -0.941 5.941 16 Si 0.934 3.066 17 H -0.262 1.262 18 H -0.287 1.287 19 H -0.240 1.240 20 C 0.161 3.839 21 C -0.155 4.155 22 C -0.070 4.070 23 C -0.165 4.165 24 C 0.088 3.912 25 N -0.513 5.513 26 C 0.105 3.895 27 C 0.075 3.925 28 H 0.031 0.969 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.040 0.960 39 H 0.267 0.733 40 H 0.091 0.909 41 H 0.078 0.922 42 H 0.145 0.855 43 H 0.170 0.830 44 H 0.186 0.814 45 H 0.143 0.857 46 H 0.031 0.969 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.242 6.726 -8.626 14.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.281 5.281 3 C -0.071 4.071 4 C -0.150 4.150 5 C -0.133 4.133 6 C -0.122 4.122 7 H 0.110 0.890 8 C 0.308 3.692 9 O -0.460 6.460 10 N -0.317 5.317 11 C 0.090 3.910 12 C -0.575 4.575 13 H 0.051 0.949 14 C -0.175 4.175 15 N -0.580 5.580 16 Si 0.757 3.243 17 H -0.187 1.187 18 H -0.213 1.213 19 H -0.163 1.163 20 C 0.037 3.963 21 C -0.158 4.158 22 C -0.096 4.096 23 C -0.184 4.184 24 C -0.069 4.069 25 N -0.222 5.222 26 C -0.052 4.052 27 C -0.053 4.053 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.114 0.886 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.096 0.904 42 H 0.163 0.837 43 H 0.187 0.813 44 H 0.203 0.797 45 H 0.160 0.840 46 H 0.049 0.951 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.752 7.346 -9.123 15.241 hybrid contribution -0.261 -0.923 0.510 1.086 sum -10.013 6.423 -8.613 14.686 Atomic orbital electron populations 1.22409 0.85713 1.02605 1.01494 1.61851 1.08994 1.14694 1.42546 1.22193 0.95423 0.88206 1.01316 1.21603 0.94710 1.00816 0.97855 1.21349 0.99644 0.92782 0.99486 1.21280 0.96497 0.97354 0.97056 0.89016 1.20836 0.78916 0.82296 0.87164 1.90556 1.45142 1.69480 1.40865 1.47975 1.51524 1.06319 1.25834 1.19886 0.91387 0.93618 0.86131 1.21446 0.94024 1.35418 1.06587 0.94927 1.25689 1.02711 0.94389 0.94679 1.70042 1.37517 1.38006 1.12435 0.85914 0.80083 0.80284 0.78039 1.18680 1.21268 1.16283 1.20167 0.94027 0.97618 0.84449 1.21229 1.00034 0.97023 0.97532 1.21847 0.92928 0.96925 0.97950 1.22485 1.00257 1.01208 0.94491 1.23364 0.95156 0.89277 0.99076 1.67723 1.05553 1.25471 1.23449 1.22644 0.96108 0.96964 0.89441 1.21976 0.92598 0.98801 0.91929 0.95020 0.91835 0.89315 0.88551 0.94551 0.91694 0.88790 0.92453 0.91932 0.92473 0.94248 0.92345 0.89062 0.90388 0.83741 0.81265 0.79742 0.84007 0.95093 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.59 127.69 1.22 1.80 16 2 N -0.56 -15.72 4.91 -922.59 -4.53 -20.25 16 3 C 0.06 1.31 5.47 86.32 0.47 1.78 16 4 C -0.11 -2.80 6.09 30.64 0.19 -2.62 16 5 C -0.09 -2.97 4.72 30.67 0.14 -2.83 16 6 C -0.10 -3.65 1.85 -11.49 -0.02 -3.67 16 7 H 0.09 3.85 7.49 -2.39 -0.02 3.84 16 8 C 0.52 20.89 6.92 87.66 0.61 21.50 16 9 O -0.58 -24.77 14.85 -3.02 -0.04 -24.81 16 10 N -0.59 -23.41 2.44 -830.48 -2.03 -25.43 16 11 C 0.21 8.90 3.80 85.63 0.33 9.22 16 12 C -0.54 -27.97 9.74 25.60 0.25 -27.73 16 13 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 14 C 0.02 1.30 5.47 84.65 0.46 1.77 16 15 N -0.94 -55.18 13.96 21.45 0.30 -54.88 16 16 Si 0.93 39.47 27.47 68.60 1.88 41.35 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 18 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 19 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 20 C 0.16 5.75 5.54 85.63 0.47 6.23 16 21 C -0.15 -4.92 5.48 -19.77 -0.11 -5.03 16 22 C -0.07 -1.87 9.86 22.47 0.22 -1.65 16 23 C -0.17 -3.53 10.11 22.36 0.23 -3.30 16 24 C 0.09 2.06 11.18 84.69 0.95 3.00 16 25 N -0.51 -15.71 10.36 -195.84 -2.03 -17.74 16 26 C 0.10 3.46 10.77 84.67 0.91 4.37 16 27 C 0.08 2.44 4.42 86.33 0.38 2.82 16 28 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 1.63 8.10 -2.39 -0.02 1.61 16 31 H 0.10 1.83 8.09 -2.39 -0.02 1.81 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 1.99 7.87 -2.39 -0.02 1.97 16 37 H 0.06 2.38 3.04 -2.39 -0.01 2.37 16 38 H 0.04 1.56 7.54 -2.38 -0.02 1.54 16 39 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.09 3.24 8.02 -2.39 -0.02 3.22 16 41 H 0.08 2.86 7.44 -2.39 -0.02 2.84 16 42 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 43 H 0.17 2.33 8.06 -2.91 -0.02 2.30 16 44 H 0.19 2.87 8.06 -2.91 -0.02 2.85 16 45 H 0.14 5.03 7.42 -2.91 -0.02 5.01 16 46 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.08 2.64 5.44 -2.38 -0.01 2.62 16 Total: -1.00 -66.38 373.75 1.15 -65.23 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.89 Total: 30.86 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 6.70 Total: 5.67 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -8.29 Total: -118.30 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.04 Total: -24.81 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 1.88 Total: 41.35 kcal Total: -66.38 1.15 -65.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186350958.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.637 kcal (2) G-P(sol) polarization free energy of solvation -66.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds